CDH17 (cadherin 17) - Rat Genome Database

Name: CDH17
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: CDH17 (cadherin 17) Sus scrofa

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Symbol:

CDH17

Name:

cadherin 17

RGD ID:

13921361

Description:

ENCODES a protein that exhibits proton-dependent oligopeptide secondary active transmembrane transporter activity (ortholog); INVOLVED IN calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules (ortholog); homophilic cell adhesion via plasma membrane adhesion molecules (ortholog); oligopeptide transmembrane transport (ortholog); ASSOCIATED WITH megacolon (ortholog); occupational asthma (ortholog); FOUND IN basolateral plasma membrane (ortholog); INTERACTS WITH deoxynivalenol; zearalenone

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cadherin-17

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CDH17 (cadherin 17)	HGNC	EggNOG, Ensembl, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Cdh17 (cadherin 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cdh17 (cadherin 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cdh17 (cadherin 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CDH17 (cadherin 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CDH17 (cadherin 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cdh17 (cadherin 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CDH17 (cadherin 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cdh17 (cadherin 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	42,515,276 - 42,597,772 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	42,508,852 - 42,597,888 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	45,926,942 - 46,015,745 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

megacolon (ISO)

occupational asthma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

deoxynivalenol (EXP)

zearalenone (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adherens junction organization (IBA)

B cell differentiation (IEA)

calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules (IBA,IEA,ISO,ISS)

cell adhesion (IEA)

cell migration (IBA)

cell morphogenesis (IBA)

cell-cell adhesion mediated by cadherin (IBA)

cell-cell junction assembly (IBA)

germinal center B cell differentiation (IEA)

homophilic cell adhesion via plasma membrane adhesion molecules (IEA,ISO,ISS)

integrin-mediated signaling pathway (IEA)

marginal zone B cell differentiation (IEA)

oligopeptide transmembrane transport (ISS)

oligopeptide transport (IEA,ISO,ISS)

positive regulation of integrin activation by cell surface receptor linked signal transduction (IEA)

spleen development (IEA)

T cell mediated immunity (ISO)

transmembrane transport (IEA)

Cellular Component

adherens junction (IBA)

basolateral plasma membrane (IEA,ISO,ISS)

catenin complex (IBA)

cell junction (IEA)

cell surface (IEA)

membrane (IEA)

nucleoplasm (IEA)

plasma membrane (IEA)

Molecular Function

beta-catenin binding (IBA)

cadherin binding (IBA)

calcium ion binding (IEA)

integrin binding (IEA)

protein binding (ISO)

proton-dependent oligopeptide secondary active transmembrane transporter activity (IEA,ISS)

References

Additional References at PubMed

PMID:14681463	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CDH17
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	42,515,276 - 42,597,772 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	42,508,852 - 42,597,888 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	45,926,942 - 46,015,745 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDH17
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	94,127,162 - 94,217,278 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	94,127,162 - 94,217,303 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	95,139,390 - 95,229,506 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	95,208,566 - 95,289,986 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	95,208,567 - 95,289,986	NCBI
Celera	8	91,325,519 - 91,415,635 (-)	NCBI		Celera
Cytogenetic Map	8	q22.1	NCBI
HuRef	8	90,347,824 - 90,438,513 (-)	NCBI		HuRef
CHM1_1	8	95,179,693 - 95,269,835 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	95,252,073 - 95,342,140 (-)	NCBI		T2T-CHM13v2.0

Cdh17
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	11,758,157 - 11,817,905 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	11,758,147 - 11,817,895 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	11,758,157 - 11,817,905 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	11,758,147 - 11,817,895 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	11,685,304 - 11,745,052 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	11,685,362 - 11,745,042 (+)	NCBI		MGSCv36	mm8
Celera	4	11,569,441 - 11,628,305 (+)	NCBI		Celera
Cytogenetic Map	4	A1	NCBI
cM Map	4	5.35	NCBI

Cdh17
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	30,024,544 - 30,112,226 (+)	NCBI		GRCr8
mRatBN7.2	5	25,262,820 - 25,314,884 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	25,262,758 - 25,314,884 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	27,387,641 - 27,439,661 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	28,980,395 - 29,032,405 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	28,922,774 - 28,974,871 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	25,354,187 - 25,443,675 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	25,391,115 - 25,443,718 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	30,100,327 - 30,152,651 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	26,047,222 - 26,099,173 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	26,047,170 - 26,099,164 (+)	NCBI
Celera	5	24,595,130 - 24,647,265 (+)	NCBI		Celera
Cytogenetic Map	5	q13	NCBI

Cdh17
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955417	10,370,471 - 10,441,128 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955417	10,370,606 - 10,441,008 (-)	NCBI	ChiLan1.0	ChiLan1.0

CDH17
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	111,460,208 - 111,527,885 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	86,997,151 - 87,064,876 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	90,750,904 - 90,818,629 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	92,695,117 - 92,785,121 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	92,696,182 - 92,760,732 (-)	Ensembl	panpan1.1		panPan2

CDH17
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	38,918,098 - 38,980,709 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	29	38,918,574 - 38,977,217 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	29	39,079,502 - 39,142,004 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	29	39,122,089 - 39,184,589 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	29	39,107,346 - 39,239,841 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	29	39,135,742 - 39,198,280 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	39,130,928 - 39,193,449 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	39,572,504 - 39,635,045 (-)	NCBI		UU_Cfam_GSD_1.0

Cdh17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	40,573,286 - 40,636,936 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936544	7,156,213 - 7,205,127 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936544	7,156,213 - 7,208,392 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDH17
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	89,101,788 - 89,179,353 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	89,101,744 - 89,179,251 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	51,669,207 - 51,747,510 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdh17
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624763	1,543,048 - 1,621,978 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624763	1,543,341 - 1,621,970 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CDH17
2445 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
8	2	2	1	3	6	3	2	1	2	1

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_001927101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013996607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK231226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU407285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01131521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000006698 ⟹ ENSSSCP00000006518

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	42,515,276 - 42,597,771 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000050501 ⟹ ENSSSCP00000036181

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	42,515,306 - 42,596,988 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000054341 ⟹ ENSSSCP00000035056

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	42,515,306 - 42,597,772 (+)	Ensembl

RefSeq Acc Id:

XM_001927101 ⟹ XP_001927136

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	42,515,234 - 42,597,775 (+)	NCBI

Sequence:

show sequence

ATGTTTGACTGAAGGCAAAGGGAGAGGCTGGGGAAGTGGAACACTGCAGAGGGAGTGTCCTCTG
GGGGAGCTACTCAAGTTCCAGACAGACTCTCAACAGCTGACTGGAAGAAAATAACTTTTAACAA
CCATTTTGTTACCTGCTTACAGAAAGGAGTTTGAATAAAGAAAACCATGACGACGCAAGCCCGA
CTGGACTGCTTGTGTCTCCTGATACTTTACTTGACAACTGGATACGGCCAAGAAGGAAAGTTTA
GTGGACCCCTGAAACCCATGACATTTTCTATTTTTGAAGGTCAAGAACCGAGTCAAATCATATT
CCAGTTTAAGGCCGATCCTCCTGCTGTGACTTTTGTACTAACTGGGGAGACAGATGGCATATTT
CAGATACAACCAGATGGACTTCTATATCACAACAAAGCCCTGGACCGGGAAACAAGAGCGGTTC
ACAAACTCCAGGTCTCAGCCCTGGATGCTCATGGCAACACAGTGGAGGGCCCAGTCCCCATCAC
CATAGAGGTGAAGGACATCAATGACAATCGGCCTACGTTTCTCCAGACAAACTATCAAGGCTCA
GTCAGGCAGAATTCTCGCCCAGGAAAGCCCTTTATGTATGTCAATGCTACAGACTTGGATGATC
CAGCCACGCCCAATGGCCAGCTTATTTATCAAATTATCATGCAGCTTCCCAAGATCAATGACGT
CATGTACTTTCAGATCAACAACAAAACGGGAGCAATTTCCCTTACTGCAGAAGGATCCCGGGAA
TTAGATCCTATTAAGAACCCTTTCTACAAGCTGGTGGTCTCAGTGGAGGACATGGGAGGTCAGA
ATGAGCATTCCTTTAGCGACAGCACATCTGTGGATATTACCGTGCAGGAGAATATTTGGAAAGC
ACCAGAACCTGTGGAGATTGAAGAAAACTCAACTAATACTCACCCCATCAAAATCACTCAGGTG
CGGTGGAACGACCCAGGTGCACTATATTCTTTAATGGACAAGGAGAAGCTACCAAAATTCCCTT
TTTCAATTGACCAGGAAGGAGATATTTATGTCACTCAGCCCTTGGACCGAGAAGAAAAGGATTC
ATATGTTTTTTATGCGATCGCCAAGGATGAGCTTGGAAAACCACTTGCATTCCCACTGAAAGTT
CAAGTGAAAGTTAAAGACATTAATGATAATCCACCTACATGTCCATCTACAGTGACTGTATTTG
AGGTCCAGGAGAATGAACAAATAGGGAGCAATATTGGAACCCTTACTGCTCATGACATAGATGA
AGAAAACACAATCAACAGTGTCTTGGGGTACAAAATTGTGGATCAAATCCCCAAAGTTCCTAGG
GATGGACTATTCCTGGTCCAAACCTACTCGGGAACATTCCAGTTAGCTGGGCAGTCCTTGAAGA
AGCAAGACACTCCGCAGTACAACTTGACAGTAGAGGTTTCTGACAAAGATTTCAAGACCCTCTG
CCATGTGCAAATCAACATTATTGATATCAACGATCAGATCCCCATCTTTGAAAAATCAGATTAT
GGAAACCTAACTCTCCCTGAAGATACAGCTGTTGGATCCATCATCTTAACCATCCAGGCCACTG
ATGCTGATGAACCACATACTGGGAGTTCTAAAATCCTGTATCGGATTATACAGGGAGACAGTGA
TGGACGTTTGGAGGTTGAAACAGATCTCCAAACCAATGCTGGCTATGTCAAGGTTAAAAAGCCT
CTTGACTTCGAAACAGTAGCTGTTCACAACATTGTGTTTCAAGCAGAAAATCCTGAGCCTTTGG
TGTCTGGTGTGCAGTACAATGCCAGCTCTTTTGCCTCATTCAGGCTTATTGTGACAGATGTGAA
TGAAACACCACAATTTTCTCAACAAGTATTCCAAGCAAAAGTCAGTGAGGATGTGCCCAAAGGC
ACTAAAGTGGGCAATGTGACTGCCAAGGATCCGGAAGGTCTGGACATAAGTTATTCACTGAGAG
GCGACAAGAGAGGTTGGCTTAGAATTGACCCCGTCACTGGCGAGATCTTCAGTGTGGCTCCGCT
GGACAGGGAAGCTGAAAGTCTGTATCGAGTTGAAGTGGTGGCAACGGAAGTAGGTGGTTCCTCC
TTGAGCTCCACTGCGAATTTCCACCTGGCTCTCACGGATGTGAATGACAACCCCCCTCGGCTGG
TCAAGGAGTACACAGGCTTGTTCTTCTGCTATCCCCCCAAAGAACCTGGAAGTCTCATCTTCGA
GGCCACTGATGATGATCAGCAGCTACTTCGGGGTCCACACTTTACCTTTTCCCTTGGCAGCGAA
AGCTTGCAGAAGGACTGGGAAGTTTCCAAAATCAATGGAACTCATGCTAGCCTCTCCACCAAGC
ACACCAACTTTGAGGAGAAAGTTTACCACATCCCAATCCGCATCAATGATGGTGGCCGGCCACC
CTTGGAAGGGACTGTCTCTTTACCAGTTACTTTCTGCACATGTGTGGAGGAAAGATGTTTCCAG
CCAGCAGAACGCCTCCCTGGGATACCCACGGTGGGCATGGCAGTGGGGATACTCCTCACCACCT
TTTTGGTCATCGGTATAATTTTAGCAGTTGTGTTTATCCGGATGAAGAGGAATAAAGGCCAAGA
TAATGTGGAAAGGGCTCAGGCATCTGAAGTCGAGCCTCTGAGAAACTGAATGTGAAAAGGAATG
TTTGGGTTTATGTATCAAGTGCTATTTCAGTAACATAACCATTCAACCCCCTGATTTTTCTTTT
CATCCAACATGTGTGCTATAATTTTTTACAGATATACCCTCTTGCCCTTTAATATTTTATGACC
CTTAGATAGTTCATGTGCTATAGACATTAGAGACATTTTCCATTTTCTCATGACACGTTCCCCC
TCTGCAAAAGCCTCAGCTATTTATCCAAACACAAAAATGTATGTGTTTTTCCCTCTCTGGGGAA
GAGCGGTTGATGAAATTTCTTCTTCATCAAGGAGATTTTTATCAGTCATCTACCACAGAACTTC
CTGGATTCCATGTATGCTTTTTCTGAGTCCATCCTGTGGCTCCTCCCTCTAAGCCTCCTTTGGT
ATTTTGCTAATGTGGAAACATTTGTTCCAGAAGAGAGCAAAGCGAAGTCTCAGGAGAAGATAAA
AGCACAGACCGGACCCTGAGTTTGAACAGAAACTTCATTGTTATCAGCCCCTGGGGGCTTCTCT
GTTGCTTTTCACTGGAGGATTTTGCATTTGGGAACAGCACAAGCCCAGCACAGACCATGCTTCA
TGAACCCTGGTGCAGAAACCAGCCACTGCCACGTTTTCTCACTATCCACCATGATCATGTGCTG
TGCATGTTTTCTTGTATAGTAATACATTTTTGGTTATTATATATTTAATGGTGGAGGAAAATAA
GGAAGCATGAAAGATGTGTAGTGACAGAAATCAAGAATAAACATTGGCTGTGGTTTTGTTTCTT
GGAT

hide sequence

RefSeq Acc Id:

XM_013996607 ⟹ XP_013852061

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	42,508,852 - 42,597,888 (+)	NCBI

Sequence:

show sequence

GATGCTCTTGCTCCACAAGGAAGTCAAGGGTTATCTAAGAGGATAGCAGCTGGGGAAGAGATTT
GAGTAGACAGCTGGTGGGAATGTCATCGTGGTGGAAGTATTGATGTTTTGGCTGTGGCTCTGTG
AGCTGATGCATCTTCTTAGTGGACCTGAGCCACTCGTCTGTTTGCTGTGTCGGGCGGGAGTTTG
AATAAAGAAAACCATGACGACGCAAGCCCGACTGGACTGCTTGTGTCTCCTGATACTTTACTTG
ACAACTGGATACGGCCAAGAAGGAAAGTTTAGTGGACCCCTGAAACCCATGACATTTTCTATTT
TTGAAGGTCAAGAACCGAGTCAAATCATATTCCAGTTTAAGGCCGATCCTCCTGCTGTGACTTT
TGTACTAACTGGGGAGACAGATGGCATATTTCAGATACAACCAGATGGACTTCTATATCACAAC
AAAGCCCTGGACCGGGAAACAAGAGCGGTTCACAAACTCCAGGTCTCAGCCCTGGATGCTCATG
GCAACACAGTGGAGGGCCCAGTCCCCATCACCATAGAGGTGAAGGACATCAATGACAATCGGCC
TACGTTTCTCCAGACAAACTATCAAGGCTCAGTCAGGCAGAATTCTCGCCCAGGAAAGCCCTTT
ATGTATGTCAATGCTACAGACTTGGATGATCCAGCCACGCCCAATGGCCAGCTTATTTATCAAA
TTATCATGCAGCTTCCCAAGATCAATGACGTCATGTACTTTCAGATCAACAACAAAACGGGAGC
AATTTCCCTTACTGCAGAAGGATCCCGGGAATTAGATCCTATTAAGAACCCTTTCTACAAGCTG
GTGGTCTCAGTGGAGGACATGGGAGGTCAGAATGAGCATTCCTTTAGCGACAGCACATCTGTGG
ATATTACCGTGCAGGAGAATATTTGGAAAGCACCAGAACCTGTGGAGATTGAAGAAAACTCAAC
TAATACTCACCCCATCAAAATCACTCAGGTGCGGTGGAACGACCCAGGTGCACTATATTCTTTA
ATGGACAAGGAGAAGCTACCAAAATTCCCTTTTTCAATTGACCAGGAAGGAGATATTTATGTCA
CTCAGCCCTTGGACCGAGAAGAAAAGGATTCATATGTTTTTTATGCGATCGCCAAGGATGAGCT
TGGAAAACCACTTGCATTCCCACTGAAAGTTCAAGTGAAAGTTAAAGACATTAATGATAATCCA
CCTACATGTCCATCTACAGTGACTGTATTTGAGGTCCAGGAGAATGAACAAATAGGGAGCAATA
TTGGAACCCTTACTGCTCATGACATAGATGAAGAAAACACAATCAACAGTGTCTTGGGGTACAA
AATTGTGGATCAAATCCCCAAAGTTCCTAGGGATGGACTATTCCTGGTCCAAACCTACTCGGGA
ACATTCCAGTTAGCTGGGCAGTCCTTGAAGAAGCAAGACACTCCGCAGTACAACTTGACAGTAG
AGGTTTCTGACAAAGATTTCAAGACCCTCTGCCATGTGCAAATCAACATTATTGATATCAACGA
TCAGATCCCCATCTTTGAAAAATCAGATTATGGAAACCTAACTCTCCCTGAAGATACAGCTGTT
GGATCCATCATCTTAACCATCCAGGCCACTGATGCTGATGAACCACATACTGGGAGTTCTAAAA
TCCTGTATCGGATTATACAGGGAGACAGTGATGGACGTTTGGAGGTTGAAACAGATCTCCAAAC
CAATGCTGGCTATGTCAAGGTTAAAAAGCCTCTTGACTTCGAAACAGTAGCTGTTCACAACATT
GTGTTTCAAGCAGAAAATCCTGAGCCTTTGGTGTCTGGTGTGCAGTACAATGCCAGCTCTTTTG
CCTCATTCAGGCTTATTGTGACAGATGTGAATGAAACACCACAATTTTCTCAACAAGTATTCCA
AGCAAAAGTCAGTGAGGATGTGCCCAAAGGCACTAAAGTGGGCAATGTGACTGCCAAGGATCCG
GAAGGTCTGGACATAAGTTATTCACTGAGAGGCGACAAGAGAGGTTGGCTTAGAATTGACCCCG
TCACTGGCGAGATCTTCAGTGTGGCTCCGCTGGACAGGGAAGCTGAAAGTCTGTATCGAGTTGA
AGTGGTGGCAACGGAAGTAGGTGGTTCCTCCTTGAGCTCCACTGCGAATTTCCACCTGGCTCTC
ACGGATGTGAATGACAACCCCCCTCGGCTGGTCAAGGAGTACACAGGCTTGTTCTTCTGCTATC
CCCCCAAAGAACCTGGAAGTCTCATCTTCGAGGCCACTGATGATGATCAGCAGCTACTTCGGGG
TCCACACTTTACCTTTTCCCTTGGCAGCGAAAGCTTGCAGAAGGACTGGGAAGTTTCCAAAATC
AATGGAACTCATGCTAGCCTCTCCACCAAGCACACCAACTTTGAGGAGAAAGTTTACCACATCC
CAATCCGCATCAATGATGGTGGCCGGCCACCCTTGGAAGGGACTGTCTCTTTACCAGTTACTTT
CTGCACATGTGTGGAGGAAAGATGTTTCCAGCCAGCAGAACGCCTCCCTGGGATACCCACGGTG
GGCATGGCAGTGGGGATACTCCTCACCACCTTTTTGGTCATCGGTATAATTTTAGCAGTTGTGT
TTATCCGGATGAAGAGGAATAAAGGCCAAGATAATGTGGAAAGGGCTCAGGCATCTGAAGTCGA
GCCTCTGAGAAACTGAATGTGAAAAGGAATGTTTGGGTTTATGTATCAAGTGCTATTTCAGTAA
CATAACCATTCAACCCCCTGATTTTTCTTTTCATCCAACATGTGTGCTATAATTTTTTACAGAT
ATACCCTCTTGCCCTTTAATATTTTATGACCCTTAGATAGTTCATGTGCTATAGACATTAGAGA
CATTTTCCATTTTCTCATGACACGTTCCCCCTCTGCAAAAGCCTCAGCTATTTATCCAAACACA
AAAATGTATGTGTTTTTCCCTCTCTGGGGAAGAGCGGTTGATGAAATTTCTTCTTCATCAAGGA
GATTTTTATCAGTCATCTACCACAGAACTTCCTGGATTCCATGTATGCTTTTTCTGAGTCCATC
CTGTGGCTCCTCCCTCTAAGCCTCCTTTGGTATTTTGCTAATGTGGAAACATTTGTTCCAGAAG
AGAGCAAAGCGAAGTCTCAGGAGAAGATAAAAGCACAGACCGGACCCTGAGTTTGAACAGAAAC
TTCATTGTTATCAGCCCCTGGGGGCTTCTCTGTTGCTTTTCACTGGAGGATTTTGCATTTGGGA
ACAGCACAAGCCCAGCACAGACCATGCTTCATGAACCCTGGTGCAGAAACCAGCCACTGCCACG
TTTTCTCACTATCCACCATGATCATGTGCTGTGCATGTTTTCTTGTATAGTAATACATTTTTGG
TTATTATATATTTAATGGTGGAGGAAAATAAGGAAGCATGAAAGATGTGTAGTGACAGAAATCA
AGAATAAACATTGGCTGTGGTTTTGTTTCTTGGATCTCTTTGGCTCTGCTTCCTGGTTCTCTGC
TTTTGTTGAAGGAAGGACTAAATAACAATGGTTACGATCGTGTATCAAAATTTCCTCCCATGTA
GAATTAGCCCATAAAGATAG

hide sequence

Protein Sequences


Protein RefSeqs	XP_001927136	(Get FASTA)	NCBI Sequence Viewer
	XP_013852061	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000006518.4
	ENSSSCP00000035056
	ENSSSCP00000035056.2
	ENSSSCP00000036181.2
	ENSSSCP00015022163.1
	ENSSSCP00015022247.1
	ENSSSCP00015022299.1
	ENSSSCP00025036293.1
	ENSSSCP00025036450.1
	ENSSSCP00025036608.1
	ENSSSCP00030024498.1
	ENSSSCP00030024506.1
	ENSSSCP00030024516.1
	ENSSSCP00035032392.1
	ENSSSCP00035032398.1
	ENSSSCP00035032404.1
	ENSSSCP00040012855.1
	ENSSSCP00040012918.1
	ENSSSCP00040012950.1
	ENSSSCP00045037798.1
	ENSSSCP00045037963.1
	ENSSSCP00045038102.1
	ENSSSCP00050013532.1
	ENSSSCP00050013546.1
	ENSSSCP00050013548.1
	ENSSSCP00055034918.1
	ENSSSCP00055035076.1
	ENSSSCP00055035189.1
	ENSSSCP00060018782.1
	ENSSSCP00060018784.1
	ENSSSCP00060018785.1
	ENSSSCP00065010486.1
	ENSSSCP00065010492.1
	ENSSSCP00065010495.1
	ENSSSCP00070024101.1
	ENSSSCP00070024109.1
	ENSSSCP00070024114.1
	ENSSSCP00070024122.1
	ENSSSCP00070024130.1
	ENSSSCP00070024142.1
	ENSSSCP00070024145.1

RefSeq Acc Id:

XP_013852061 ⟸ XM_013996607

- UniProtKB:

A0A287A8C4 (UniProtKB/TrEMBL), A0A4X1U7J8 (UniProtKB/TrEMBL), A0A286ZU93 (UniProtKB/TrEMBL), A0A8D0NQ50 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTTQARLDCLCLLILYLTTGYGQEGKFSGPLKPMTFSIFEGQEPSQIIFQFKADPPAVTFVLTG
ETDGIFQIQPDGLLYHNKALDRETRAVHKLQVSALDAHGNTVEGPVPITIEVKDINDNRPTFLQ
TNYQGSVRQNSRPGKPFMYVNATDLDDPATPNGQLIYQIIMQLPKINDVMYFQINNKTGAISLT
AEGSRELDPIKNPFYKLVVSVEDMGGQNEHSFSDSTSVDITVQENIWKAPEPVEIEENSTNTHP
IKITQVRWNDPGALYSLMDKEKLPKFPFSIDQEGDIYVTQPLDREEKDSYVFYAIAKDELGKPL
AFPLKVQVKVKDINDNPPTCPSTVTVFEVQENEQIGSNIGTLTAHDIDEENTINSVLGYKIVDQ
IPKVPRDGLFLVQTYSGTFQLAGQSLKKQDTPQYNLTVEVSDKDFKTLCHVQINIIDINDQIPI
FEKSDYGNLTLPEDTAVGSIILTIQATDADEPHTGSSKILYRIIQGDSDGRLEVETDLQTNAGY
VKVKKPLDFETVAVHNIVFQAENPEPLVSGVQYNASSFASFRLIVTDVNETPQFSQQVFQAKVS
EDVPKGTKVGNVTAKDPEGLDISYSLRGDKRGWLRIDPVTGEIFSVAPLDREAESLYRVEVVAT
EVGGSSLSSTANFHLALTDVNDNPPRLVKEYTGLFFCYPPKEPGSLIFEATDDDQQLLRGPHFT
FSLGSESLQKDWEVSKINGTHASLSTKHTNFEEKVYHIPIRINDGGRPPLEGTVSLPVTFCTCV
EERCFQPAERLPGIPTVGMAVGILLTTFLVIGIILAVVFIRMKRNKGQDNVERAQASEVEPLRN

hide sequence

RefSeq Acc Id:

XP_001927136 ⟸ XM_001927101

- UniProtKB:

A0A287A8C4 (UniProtKB/TrEMBL), A0A4X1U7J8 (UniProtKB/TrEMBL), A0A286ZU93 (UniProtKB/TrEMBL), A0A8D0NQ50 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTTQARLDCLCLLILYLTTGYGQEGKFSGPLKPMTFSIFEGQEPSQIIFQFKADPPAVTFVLTG
ETDGIFQIQPDGLLYHNKALDRETRAVHKLQVSALDAHGNTVEGPVPITIEVKDINDNRPTFLQ
TNYQGSVRQNSRPGKPFMYVNATDLDDPATPNGQLIYQIIMQLPKINDVMYFQINNKTGAISLT
AEGSRELDPIKNPFYKLVVSVEDMGGQNEHSFSDSTSVDITVQENIWKAPEPVEIEENSTNTHP
IKITQVRWNDPGALYSLMDKEKLPKFPFSIDQEGDIYVTQPLDREEKDSYVFYAIAKDELGKPL
AFPLKVQVKVKDINDNPPTCPSTVTVFEVQENEQIGSNIGTLTAHDIDEENTINSVLGYKIVDQ
IPKVPRDGLFLVQTYSGTFQLAGQSLKKQDTPQYNLTVEVSDKDFKTLCHVQINIIDINDQIPI
FEKSDYGNLTLPEDTAVGSIILTIQATDADEPHTGSSKILYRIIQGDSDGRLEVETDLQTNAGY
VKVKKPLDFETVAVHNIVFQAENPEPLVSGVQYNASSFASFRLIVTDVNETPQFSQQVFQAKVS
EDVPKGTKVGNVTAKDPEGLDISYSLRGDKRGWLRIDPVTGEIFSVAPLDREAESLYRVEVVAT
EVGGSSLSSTANFHLALTDVNDNPPRLVKEYTGLFFCYPPKEPGSLIFEATDDDQQLLRGPHFT
FSLGSESLQKDWEVSKINGTHASLSTKHTNFEEKVYHIPIRINDGGRPPLEGTVSLPVTFCTCV
EERCFQPAERLPGIPTVGMAVGILLTTFLVIGIILAVVFIRMKRNKGQDNVERAQASEVEPLRN

hide sequence

Ensembl Acc Id:

ENSSSCP00000035056 ⟸ ENSSSCT00000054341

Ensembl Acc Id:

ENSSSCP00000036181 ⟸ ENSSSCT00000050501

Ensembl Acc Id:

ENSSSCP00000006518 ⟸ ENSSSCT00000006698

Protein Domains

Cadherin

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000006106	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015040900	UniProtKB/TrEMBL
	ENSSSCG00025060818	UniProtKB/TrEMBL
	ENSSSCG00030038379	UniProtKB/TrEMBL
	ENSSSCG00035058825	UniProtKB/TrEMBL
	ENSSSCG00040022914	UniProtKB/TrEMBL
	ENSSSCG00045031738	UniProtKB/TrEMBL
	ENSSSCG00050024071	UniProtKB/TrEMBL
	ENSSSCG00055022277	UniProtKB/TrEMBL
	ENSSSCG00060032463	UniProtKB/TrEMBL
	ENSSSCG00065019271	UniProtKB/TrEMBL
	ENSSSCG00070014595	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000006698.4	UniProtKB/TrEMBL
	ENSSSCT00000050501.2	UniProtKB/TrEMBL
	ENSSSCT00000054341	ENTREZGENE
	ENSSSCT00000054341.2	UniProtKB/TrEMBL
	ENSSSCT00015055234.1	UniProtKB/TrEMBL
	ENSSSCT00015055391.1	UniProtKB/TrEMBL
	ENSSSCT00015055488.1	UniProtKB/TrEMBL
	ENSSSCT00025083421.1	UniProtKB/TrEMBL
	ENSSSCT00025083770.1	UniProtKB/TrEMBL
	ENSSSCT00025084135.1	UniProtKB/TrEMBL
	ENSSSCT00030053674.1	UniProtKB/TrEMBL
	ENSSSCT00030053692.1	UniProtKB/TrEMBL
	ENSSSCT00030053712.1	UniProtKB/TrEMBL
	ENSSSCT00035078943.1	UniProtKB/TrEMBL
	ENSSSCT00035078960.1	UniProtKB/TrEMBL
	ENSSSCT00035078969.1	UniProtKB/TrEMBL
	ENSSSCT00040030881.1	UniProtKB/TrEMBL
	ENSSSCT00040031042.1	UniProtKB/TrEMBL
	ENSSSCT00040031116.1	UniProtKB/TrEMBL
	ENSSSCT00045054289.1	UniProtKB/TrEMBL
	ENSSSCT00045054516.1	UniProtKB/TrEMBL
	ENSSSCT00045054688.1	UniProtKB/TrEMBL
	ENSSSCT00050032453.1	UniProtKB/TrEMBL
	ENSSSCT00050032479.1	UniProtKB/TrEMBL
	ENSSSCT00050032481.1	UniProtKB/TrEMBL
	ENSSSCT00055043847.1	UniProtKB/TrEMBL
	ENSSSCT00055044040.1	UniProtKB/TrEMBL
	ENSSSCT00055044179.1	UniProtKB/TrEMBL
	ENSSSCT00060044023.1	UniProtKB/TrEMBL
	ENSSSCT00060044028.1	UniProtKB/TrEMBL
	ENSSSCT00060044032.1	UniProtKB/TrEMBL
	ENSSSCT00065025641.1	UniProtKB/TrEMBL
	ENSSSCT00065025652.1	UniProtKB/TrEMBL
	ENSSSCT00065025656.1	UniProtKB/TrEMBL
	ENSSSCT00070028913.1	UniProtKB/TrEMBL
	ENSSSCT00070028922.1	UniProtKB/TrEMBL
	ENSSSCT00070028928.1	UniProtKB/TrEMBL
	ENSSSCT00070028937.1	UniProtKB/TrEMBL
	ENSSSCT00070028945.1	UniProtKB/TrEMBL
	ENSSSCT00070028956.1	UniProtKB/TrEMBL
	ENSSSCT00070028962.1	UniProtKB/TrEMBL
Gene3D-CATH	Cadherins	UniProtKB/TrEMBL
InterPro	Cadherin	UniProtKB/TrEMBL
	Cadherin-like_dom	UniProtKB/TrEMBL
	Cadherin-like_sf	UniProtKB/TrEMBL
	Cadherin_CS	UniProtKB/TrEMBL
KEGG Report	ssc:100157834	UniProtKB/TrEMBL
NCBI Gene	CDH17	ENTREZGENE
PANTHER	CADHERIN-17	UniProtKB/TrEMBL
	PTHR24027	UniProtKB/TrEMBL
Pfam	Cadherin	UniProtKB/TrEMBL
PRINTS	CADHERIN	UniProtKB/TrEMBL
PROSITE	CADHERIN_1	UniProtKB/TrEMBL
	CADHERIN_2	UniProtKB/TrEMBL
SMART	SM00112	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49313	UniProtKB/TrEMBL
UniProt	A0A286ZU93	ENTREZGENE, UniProtKB/TrEMBL
	A0A286ZWW7_PIG	UniProtKB/TrEMBL
	A0A287A8C4	ENTREZGENE
	A0A4X1U5N0_PIG	UniProtKB/TrEMBL
	A0A4X1U7J8	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1U7L9_PIG	UniProtKB/TrEMBL
	A0A4X1U878_PIG	UniProtKB/TrEMBL
	A0A4X1U8A6_PIG	UniProtKB/TrEMBL
	A0A4X1U8C3_PIG	UniProtKB/TrEMBL
	A0A8D0NQ50	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0WMG9_PIG	UniProtKB/TrEMBL
	A0A8D0WNV6_PIG	UniProtKB/TrEMBL
	A0A8D0WQ01_PIG	UniProtKB/TrEMBL
	F1RY44_PIG	UniProtKB/TrEMBL
UniProt Secondary	A0A287A8C4	UniProtKB/TrEMBL
VGNC ID	VGNC:86480	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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