PPP1R7 (protein phosphatase 1 regulatory subunit 7) - Rat Genome Database

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Gene: PPP1R7 (protein phosphatase 1 regulatory subunit 7) Sus scrofa
Analyze
Symbol: PPP1R7
Name: protein phosphatase 1 regulatory subunit 7
RGD ID: 13919128
Description: INVOLVED IN chromosome segregation (ortholog); positive regulation of protein dephosphorylation (ortholog); ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog); FOUND IN chromosome (inferred)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: protein phosphatase 1, regulatory (inhibitor) subunit 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15139,917,257 - 139,941,251 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115139,918,006 - 139,937,168 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215155,032,379 - 155,050,592 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
PPP1R7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15139,917,257 - 139,941,251 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115139,918,006 - 139,937,168 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215155,032,379 - 155,050,592 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPP1R7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382241,149,573 - 241,183,652 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2241,149,576 - 241,183,652 (+)EnsemblGRCh38hg38GRCh38
GRCh372242,088,988 - 242,123,067 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362241,738,575 - 241,771,112 (+)NCBINCBI36Build 36hg18NCBI36
Build 342241,809,891 - 241,842,429NCBI
Celera2235,759,626 - 235,792,623 (+)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2233,846,344 - 233,879,486 (+)NCBIHuRef
CHM1_12242,095,958 - 242,128,538 (+)NCBICHM1_1
T2T-CHM13v2.02241,648,673 - 241,683,461 (+)NCBIT2T-CHM13v2.0
Ppp1r7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39193,271,350 - 93,295,344 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl193,270,576 - 93,301,211 (+)EnsemblGRCm39 Ensembl
GRCm38193,343,610 - 93,367,616 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl193,342,854 - 93,373,489 (+)EnsemblGRCm38mm10GRCm38
MGSCv37195,240,222 - 95,264,195 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,174,051 - 95,198,024 (+)NCBIMGSCv36mm8
Celera196,288,260 - 96,312,213 (+)NCBICelera
Cytogenetic Map1DNCBI
cM Map147.24NCBI
Ppp1r7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89101,333,472 - 101,358,589 (+)NCBIGRCr8
mRatBN7.2993,886,068 - 93,911,198 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl993,886,143 - 93,914,850 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9102,321,658 - 102,346,746 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09107,457,461 - 107,482,640 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09105,813,603 - 105,838,783 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0999,556,587 - 100,504,077 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0999,226,358 - 99,235,083 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.09100,116,100 - 100,160,432 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4992,624,083 - 92,648,034 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1992,828,851 - 92,852,802 (+)NCBI
Celera991,421,088 - 91,444,915 (+)NCBICelera
Cytogenetic Map9q36NCBI
Ppp1r7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955542520,605 - 539,699 (-)NCBIChiLan1.0ChiLan1.0
PPP1R7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213143,849,616 - 143,883,834 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B143,864,512 - 143,898,730 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B128,418,212 - 128,452,417 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B247,214,953 - 247,248,761 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B247,214,882 - 247,248,761 (+)Ensemblpanpan1.1panPan2
PPP1R7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12551,181,092 - 51,206,237 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2551,181,053 - 51,206,193 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2551,393,754 - 51,418,900 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02551,375,512 - 51,400,669 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2551,375,474 - 51,401,299 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12551,223,238 - 51,248,373 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02550,962,763 - 50,987,892 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02551,239,231 - 51,264,386 (+)NCBIUU_Cfam_GSD_1.0
Ppp1r7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303192,555,414 - 192,584,880 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936745639,379 - 663,926 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP1R7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110127,206,233 - 127,243,577 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604072,137,475 - 72,176,353 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp1r7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248475,246,734 - 5,263,867 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248475,247,094 - 5,263,873 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PPP1R7
400 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 4 3 5 2 23 2 3 3
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000017831   ⟹   ENSSSCP00000017350
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15139,917,257 - 139,938,686 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000059683   ⟹   ENSSSCP00000038075
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15139,918,027 - 139,937,166 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000080259   ⟹   ENSSSCP00000069603
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15139,917,257 - 139,941,251 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000090887   ⟹   ENSSSCP00000072809
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15139,918,029 - 139,937,625 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000106007   ⟹   ENSSSCP00000079168
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15139,923,867 - 139,937,625 (+)Ensembl
RefSeq Acc Id: NM_001243902   ⟹   NP_001230831
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115139,918,009 - 139,936,494 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005654201   ⟹   XP_005654258
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115139,918,006 - 139,937,168 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013982499   ⟹   XP_013837953
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115139,918,011 - 139,937,168 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005654258   ⟸   XM_005654201
- Peptide Label: isoform X1
- UniProtKB: A0A480T8K4 (UniProtKB/TrEMBL),   A0A8D0TG57 (UniProtKB/TrEMBL),   F1SI09 (UniProtKB/TrEMBL),   A0A8D1MJ11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001230831   ⟸   NM_001243902
- UniProtKB: A0A8D0TG57 (UniProtKB/TrEMBL),   F1SI09 (UniProtKB/TrEMBL),   A0A8D1MJ11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013837953   ⟸   XM_013982499
- Peptide Label: isoform X2
- UniProtKB: A0A8D1FLU8 (UniProtKB/TrEMBL),   A0A8D1RYJ3 (UniProtKB/TrEMBL),   A0A8D1WKB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000079168   ⟸   ENSSSCT00000106007
RefSeq Acc Id: ENSSSCP00000038075   ⟸   ENSSSCT00000059683
RefSeq Acc Id: ENSSSCP00000072809   ⟸   ENSSSCT00000090887
RefSeq Acc Id: ENSSSCP00000069603   ⟸   ENSSSCT00000080259
RefSeq Acc Id: ENSSSCP00000017350   ⟸   ENSSSCT00000017831


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016376 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005014669 UniProtKB/TrEMBL
  ENSSSCG00015073383 UniProtKB/TrEMBL
  ENSSSCG00025075555 UniProtKB/TrEMBL
  ENSSSCG00030019489 UniProtKB/TrEMBL
  ENSSSCG00035071829 UniProtKB/TrEMBL
  ENSSSCG00040066094 UniProtKB/TrEMBL
  ENSSSCG00045014594 UniProtKB/TrEMBL
  ENSSSCG00050040862 UniProtKB/TrEMBL
  ENSSSCG00055026090 UniProtKB/TrEMBL
  ENSSSCG00060069295 UniProtKB/TrEMBL
  ENSSSCG00065074983 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000017831 ENTREZGENE
  ENSSSCT00000017831.5 UniProtKB/TrEMBL
  ENSSSCT00000059683.3 UniProtKB/TrEMBL
  ENSSSCT00000080259.2 UniProtKB/TrEMBL
  ENSSSCT00000090887.2 UniProtKB/TrEMBL
  ENSSSCT00000106007.1 UniProtKB/TrEMBL
  ENSSSCT00005023357.1 UniProtKB/TrEMBL
  ENSSSCT00005023592.1 UniProtKB/TrEMBL
  ENSSSCT00015098595.1 UniProtKB/TrEMBL
  ENSSSCT00015098887.1 UniProtKB/TrEMBL
  ENSSSCT00025104277.1 UniProtKB/TrEMBL
  ENSSSCT00025104387.1 UniProtKB/TrEMBL
  ENSSSCT00030026932.1 UniProtKB/TrEMBL
  ENSSSCT00035097165.1 UniProtKB/TrEMBL
  ENSSSCT00040090397.1 UniProtKB/TrEMBL
  ENSSSCT00040090745.1 UniProtKB/TrEMBL
  ENSSSCT00045024868.1 UniProtKB/TrEMBL
  ENSSSCT00045024920.1 UniProtKB/TrEMBL
  ENSSSCT00050055354.1 UniProtKB/TrEMBL
  ENSSSCT00050055371.1 UniProtKB/TrEMBL
  ENSSSCT00055051677.1 UniProtKB/TrEMBL
  ENSSSCT00060094693.1 UniProtKB/TrEMBL
  ENSSSCT00065103380.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_4 UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
NCBI Gene PPP1R7 ENTREZGENE
PANTHER LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED UniProtKB/TrEMBL
  LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 ISOFORM X1 UniProtKB/TrEMBL
  PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED UniProtKB/TrEMBL
Pfam LRR_4 UniProtKB/TrEMBL
  LRR_9 UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_SD22 UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A287A2B2_PIG UniProtKB/TrEMBL
  A0A480T8K4 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QZP5_PIG UniProtKB/TrEMBL
  A0A5G2R908_PIG UniProtKB/TrEMBL
  A0A8D0TG57 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1FLU8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1MJ11 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1RYJ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WKB8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FIV7_PIG UniProtKB/TrEMBL
  F1SI09 ENTREZGENE
UniProt Secondary F1SI09 UniProtKB/TrEMBL