HIKESHI (heat shock protein nuclear import factor hikeshi) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: HIKESHI (heat shock protein nuclear import factor hikeshi) Sus scrofa
Analyze
Symbol: HIKESHI
Name: heat shock protein nuclear import factor hikeshi
RGD ID: 13918898
Description: INVOLVED IN Golgi organization (ortholog); lung development (ortholog); protein transport (ortholog); ASSOCIATED WITH Disease Progression (ortholog); exudative vitreoretinopathy 1 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: Hikeshi, heat shock protein nuclear import factor; protein Hikeshi
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl920,181,235 - 20,280,211 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1920,181,187 - 20,224,116 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2922,356,187 - 22,360,193 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
cytosol  (IBA,ISO)
nuclear body  (ISO)
nuclear speck  (IEA)
nucleoplasm  (ISO)
nucleus  (IBA,ISO)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:15679890  


Genomics

Comparative Map Data
HIKESHI
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl920,181,235 - 20,280,211 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1920,181,187 - 20,224,116 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2922,356,187 - 22,360,193 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HIKESHI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1186,302,211 - 86,345,943 (+)EnsemblGRCh38hg38GRCh38
GRCh381186,302,229 - 86,345,943 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371186,013,282 - 86,056,985 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361185,690,936 - 85,734,633 (+)NCBINCBI36hg18NCBI36
Celera1183,323,908 - 83,367,617 (+)NCBI
Cytogenetic Map11q14.2NCBI
HuRef1182,301,646 - 82,345,552 (+)NCBIHuRef
CHM1_11185,899,013 - 85,942,745 (+)NCBICHM1_1
Hikeshi
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39789,567,893 - 89,590,446 (-)NCBIGRCm39mm39
GRCm39 Ensembl789,566,737 - 89,590,412 (-)Ensembl
GRCm38789,918,685 - 89,941,223 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl789,917,529 - 89,941,204 (-)EnsemblGRCm38mm10GRCm38
MGSCv37797,067,199 - 97,089,695 (-)NCBIGRCm37mm9NCBIm37
MGSCv36789,793,881 - 89,816,377 (-)NCBImm8
Celera787,236,722 - 87,262,240 (-)NCBICelera
Cytogenetic Map7D3NCBI
cM Map750.4NCBI
Hikeshi
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21143,825,922 - 143,849,374 (-)NCBI
Rnor_6.0 Ensembl1154,142,836 - 154,170,409 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01154,147,098 - 154,170,429 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01160,451,592 - 160,474,918 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41146,522,014 - 146,545,388 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11146,600,420 - 146,623,794 (-)NCBI
Celera1142,066,378 - 142,089,750 (-)NCBICelera
Cytogenetic Map1q32NCBI
Hikeshi
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554146,628,216 - 6,656,633 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554146,632,434 - 6,656,633 (-)NCBIChiLan1.0ChiLan1.0
HIKESHI
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11184,961,298 - 85,004,740 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1184,961,298 - 85,004,740 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01181,353,756 - 81,397,167 (+)NCBIMhudiblu_PPA_v0panPan3
HIKESHI
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2113,210,362 - 13,249,565 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12113,210,356 - 13,249,595 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Hikeshi
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493649814,110,382 - 14,138,095 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HIKESHI
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1177,559,538 - 77,612,738 (+)NCBI
ChlSab1.1 Ensembl177,559,548 - 77,612,434 (+)Ensembl
Hikeshi
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248453,650,180 - 3,676,805 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 21 2 3 3
Low 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000031507   ⟹   ENSSSCP00000025601
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl920,181,235 - 20,280,211 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000052414   ⟹   ENSSSCP00000036251
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl920,185,123 - 20,280,211 (+)Ensembl
RefSeq Acc Id: XM_013979233   ⟹   XP_013834687
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1920,181,187 - 20,224,116 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013834687 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013834687   ⟸   XM_013979233
- UniProtKB: I3LNC7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000025601   ⟸   ENSSSCT00000031507
RefSeq Acc Id: ENSSSCP00000036251   ⟸   ENSSSCT00000052414
Protein Domains
DUF775


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021210 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070014146 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000025601 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000036251 UniProtKB/TrEMBL
  ENSSSCP00070023071 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000031507 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000052414 UniProtKB/TrEMBL
  ENSSSCT00070027719 UniProtKB/TrEMBL
InterPro DUF775 UniProtKB/TrEMBL
  OPI10 UniProtKB/TrEMBL
KEGG Report ssc:100739665 UniProtKB/TrEMBL
NCBI Gene HIKESHI ENTREZGENE
PANTHER PTHR12925 UniProtKB/TrEMBL
Pfam DUF775 UniProtKB/TrEMBL
UniProt A0A286ZX84_PIG UniProtKB/TrEMBL
  A0A4X1U4W7_PIG UniProtKB/TrEMBL
  I3LNC7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:88883 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-16 HIKESHI  heat shock protein nuclear import factor hikeshi    Hikeshi, heat shock protein nuclear import factor  Symbol and/or name change 5135510 APPROVED