| Gene: LRRC63 (leucine rich repeat containing 63) Sus scrofa |
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Analyze |
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| Symbol: |
LRRC63 |
| Name: |
leucine rich repeat containing 63 |
| RGD ID: |
13917615 |
| Description: |
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| Type: |
protein-coding
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| RefSeq Status: |
MODEL |
| Previously known as: |
leucine-rich repeat-containing protein 63 |
| RGD Orthologs |
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| Alliance Genes |
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| More Info |
more info ...
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| More Info |
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| Latest Assembly: |
Sscrofa11.1 - Pig Sscrofa11.1 Assembly |
| Position: |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
|---|
Sscrofa11.1 Ensembl | 11 | 21,080,028 - 21,125,646 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 11 | 21,079,430 - 21,125,611 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 11 | 21,488,417 - 21,534,898 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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| JBrowse: |
View Region in Genome Browser (JBrowse)
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| Model |
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References
Additional References at PubMed
Genomics
Comparative Map Data
LRRC63
(Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
Sscrofa11.1 Ensembl | 11 | 21,080,028 - 21,125,646 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 11 | 21,079,430 - 21,125,611 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 11 | 21,488,417 - 21,534,898 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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LRRC63
(Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 13 | 46,211,928 - 46,277,115 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 13 | 46,211,928 - 46,277,115 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 13 | 46,786,063 - 46,851,250 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 13 | 45,684,084 - 45,739,112 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 13 | 27,841,088 - 27,905,853 (+) | NCBI | | Celera | | | Cytogenetic Map | 13 | q14.13 | NCBI | | | | | HuRef | 13 | 27,583,775 - 27,648,525 (+) | NCBI | | HuRef | | | CHM1_1 | 13 | 46,754,895 - 46,819,759 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 13 | 45,432,940 - 45,498,131 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Lrrc63
(Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 14 | 75,321,743 - 75,368,402 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 14 | 75,321,743 - 75,368,321 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 14 | 75,084,303 - 75,130,962 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 14 | 75,084,303 - 75,130,881 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 14 | 75,484,110 - 75,530,690 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 14 | 73,818,458 - 73,865,038 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 14 | 72,584,216 - 72,630,816 (-) | NCBI | | Celera | | | Cytogenetic Map | 14 | D3 | NCBI | | | | | cM Map | 14 | 39.59 | NCBI | | | | |
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Lrrc63
(Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 15 | 56,809,629 - 56,846,831 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 15 | 50,400,199 - 50,437,321 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 15 | 50,400,200 - 50,437,321 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 15 | 54,541,718 - 54,578,922 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 15 | 55,660,024 - 55,697,228 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 15 | 52,492,968 - 52,530,092 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 15 | 57,132,507 - 57,170,467 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 15 | 57,133,192 - 57,170,443 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 15 | 60,845,439 - 60,881,819 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 15 | 55,944,203 - 55,981,232 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 15 | 50,032,736 - 50,069,818 (-) | NCBI | | Celera | | | Cytogenetic Map | 15 | q11 | NCBI | | | | |
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Lrrc63
(Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955518 | 3,891,327 - 3,940,895 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955518 | 3,891,612 - 3,940,698 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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LRRC63
(Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 14 | 45,114,289 - 45,180,200 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 13 | 36,168,504 - 36,234,404 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 13 | 26,754,849 - 26,820,720 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | |
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LRRC63
(Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 22 | 4,940,884 - 4,978,619 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 22 | 4,941,452 - 4,978,526 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 22 | 4,954,695 - 4,964,365 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 22 | 5,055,806 - 5,093,311 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 22 | 5,056,374 - 5,093,214 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 22 | 4,838,173 - 4,875,890 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 22 | 4,901,463 - 4,938,960 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 22 | 4,906,546 - 4,944,285 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Lrrc63
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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LRRC63
(Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 3 | 24,267,654 - 24,332,931 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 3 | 24,268,773 - 24,325,625 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666057 | 19,683,042 - 19,748,916 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Lrrc63
(Heterocephalus glaber - naked mole-rat) |
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Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
hemolymphoid system |
| High |
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| Medium |
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| Low |
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2
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2
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| Below cutoff |
1
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Sequence
| RefSeq Acc Id: |
ENSSSCT00000026241 ⟹ ENSSSCP00000024881 |
| Type: |
CODING |
| Position: |
| Pig Assembly | Chr | Position (strand) | Source |
|---|
Sscrofa11.1 Ensembl | 11 | 21,080,028 - 21,125,646 (-) | Ensembl |
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| RefSeq Acc Id: |
ENSSSCT00000104472 ⟹ ENSSSCP00000080478 |
| Type: |
CODING |
| Position: |
| Pig Assembly | Chr | Position (strand) | Source |
|---|
Sscrofa11.1 Ensembl | 11 | 21,100,231 - 21,125,342 (-) | Ensembl |
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| RefSeq Acc Id: |
XM_021065391 ⟹ XP_020921050 |
| Type: |
CODING |
| Position: |
| Pig Assembly | Chr | Position (strand) | Source |
|---|
Sscrofa11.1 | 11 | 21,079,430 - 21,125,611 (-) | NCBI |
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| Sequence: |
GGTAATAGTATGCGTATTTTGAAATTTTTGTATTTATTACACACCTAAATTTTATCTAGATTCT
TTCTAGAAGTTTTAAAAAATTATTTTCTTCCCTCTTTTTCTTTTATAGGAATTCCATTTGGACC
CAGTAGAGTATCAGTGCAGAAGGACTCTCACTAGGATGTAATCTGGATTCTACTGAATTATTTT
TCAGCAACAATTCAAACAGATTCCAAAACCTTTCCATTCTCAACCAAGAGCTGTGAACAACAGT
GCTTATTATTAAAATGCAAAACCACCCTCTACTTCTTCGGAGACCTTTAGCTCCCAAACTCCCT
AAGTTGTCCTTATGTCTGAAGAAAGCCCGTCCAGGTATGTTTATTAATCAGATATCTTTATTTT
TTTCTTTTTCGGATTTAGCTGAGATTGGTCAAACTAAGCTACCACGTGTACGGTTCGCTGAAGA
TAATATCACTTCAAGGGAAAGAGCTGAAACTAGTTTTCCTGATGTCCTTCCGAGAAATCAATCA
CAACCCCCAGTCAGTATTCAAAATCTCCTTCTTGATCATCATGTACAAAGAAGAGTGACGACTA
TTTCGACAACCAAAAAACCTTCTAAGGGGATTGACTGGCACATTCCAGAGACTGCTACTGGGTG
CATATTTTTCCCAAGGTGCTGTTCAGCTTCGCATCGAGTTTTCGGAAAAGAAATAAGCAAAATG
GAAAGTGGCAGAAAATCAGAAGACATTTTAAAAAACATTCTGATTCTCTCCTCAGAGTTCTCCA
AACGCCCAGGTGCCCCTTCTCCAGAGCCTCCTCCCAACATCCAGGAGGTTCATGCCGAGCATCT
GCTTTTGCAAAACAGAACCTATTCTTTTAAGCAGCCCCTGCTACGTTTAAGCGCAACAGTGCCG
ATCCCTGTACCGAGGACACCTGTTAAAGCAGAGACACAGCAGCCGGACCGTCTAGGACACTGTC
CTATAGTGACGCTAAGTATCACTCATGTTCCAGGTCCCATGTTCATACCAACACCAACTTTGCC
AAGGAAACCTCTGAGACAGTCCGTGATAGAAAGTCGTCTTTTAACTTTCACTCTAAGTGACGAC
ATATTTAAGTTTTATGTTTCTTTTGTTCATTTAGGGAGTCTTCAATCTAGAAAACCACCAGAAT
CACCAATTGAAAACGTCATACATGGTGAAGGTTTTAAGACTATTGTGGCAACTCAATATGAAAC
AATAATGGCCATGACCGACCTGGCGATAATAAACTGTCAAATACATGGACACAACGCACTGAAT
CTTAAGGGCTTTTTTCTCCTGAATTGTCCAGACTTAACACCTTTGGCTTTCCAATTAATATATC
TTAATTTATCATATAATAACATCTGTTACTTTCCCACAGAAGTATTTTGTCTTGAAAATTTACA
AATACTGATCCTGAGAAACAATCCTATCAAAGAAATTCCTTCTACGATTCAACAACTTAAGTTC
CTTAAGTCTTTCAACATTGCCTTTAATTTGATTACTACTCTTCCACCTGGGTTATTTTGCTTGT
TTAATCTTGAAGAACTCGATATTTCCTACAATAGCATTGCTTTTATTCCAAATGAAATCCAGAA
ACTCAGATCCCTTGAAAGATTGATTGTTGATGGGAATGAACTGACTACTTTCCCACATGGAATT
CTGAAGCTTAACCTTAAAAAAATCCTATTTGAGAATAACTTCACTAATCCCAGCTTTTGGAAAG
AGAATTCTATGAATAATCCGCAACGTCTTACTCAACTTGCTTCTTGGTTCTTTTTAAAGAATAA
TCTACATAAATATTATCCTGTGATCCCAGTGGAAATTCAAAAGTTACTAAAATGCACGTCCAAA
TGTGAGTGGTGTCACGGGCCAAGGTTCGGTGAAGGTTTTCGCATCATCCGATCCTACGATATTT
TCGGAGCCACCCAGCTTCCTGTGCTATTTTATGTCTGTTCCTCTTCCTGCTACAGAAGAGTAAA
GGAAAGCAGTTTGGGTTTTGAGAATGTTCCTGGTAAAAGAATCTCTCTAAATCCCGAGTTGATG
AGTTATACAGTGATTTATGAGTCCCCCTTTAAAAGCCACTGAAGTTTATGTGTAGAATCACGCA
TTTCTTTCAGAGCACAGGTGCTGTGTGGACGATGTAAGCGTTGTCTCATGTGACTCCTCTCTGC
AATCCTAGCACCTGATGCAAGTTGGTGATTGTTAGGGAATCTTGGTAGAATACTTACTTAAGAA
GGATTAGTAAAAGTCTTCGGATTCCAAAGAAGAGCTAGAGAGTTTCTTTTGGAGCATGTTTACT
ATAAAAAGAAAAATGTTAGCATCCTTTGTAAAAAGGATTTACCTTACAAGTGGCCTTTTTACCC
CATTCTCAGGGATAAGATAGTATTTCATCAGTGGAGTCTGGGCCTCCTATGGATTCAGAGTCAC
GTACCCAAGTTCCCAATGTTTGTGCATTTCTGTGGATACCTGTCAGTGCCACTCATCTCAGTTG
TAGACTGCTTTGGGGAAATAAAGATTGATTCCAGTACTGTATTTTGTTGTTTGAATTTATTATT
CAGGCTCTTAGAAAAGTGGTACTATCTTTCAGGGTTTTTTTTGTTTTTGTTTTTGTTTTTGCTT
TTAGGGCCATACCCTCAGCGCATGGAA
hide sequence
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| RefSeq Acc Id: |
XP_020921050 ⟸ XM_021065391 |
| - UniProtKB: |
I3LLB3 (UniProtKB/TrEMBL) |
| - Sequence: |
MQNHPLLLRRPLAPKLPKLSLCLKKARPGMFINQISLFFSFSDLAEIGQTKLPRVRFAEDNITS
RERAETSFPDVLPRNQSQPPVSIQNLLLDHHVQRRVTTISTTKKPSKGIDWHIPETATGCIFFP
RCCSASHRVFGKEISKMESGRKSEDILKNILILSSEFSKRPGAPSPEPPPNIQEVHAEHLLLQN
RTYSFKQPLLRLSATVPIPVPRTPVKAETQQPDRLGHCPIVTLSITHVPGPMFIPTPTLPRKPL
RQSVIESRLLTFTLSDDIFKFYVSFVHLGSLQSRKPPESPIENVIHGEGFKTIVATQYETIMAM
TDLAIINCQIHGHNALNLKGFFLLNCPDLTPLAFQLIYLNLSYNNICYFPTEVFCLENLQILIL
RNNPIKEIPSTIQQLKFLKSFNIAFNLITTLPPGLFCLFNLEELDISYNSIAFIPNEIQKLRSL
ERLIVDGNELTTFPHGILKLNLKKILFENNFTNPSFWKENSMNNPQRLTQLASWFFLKNNLHKY
YPVIPVEIQKLLKCTSKCEWCHGPRFGEGFRIIRSYDIFGATQLPVLFYVCSSSCYRRVKESSL
GFENVPGKRISLNPELMSYTVIYESPFKSH
hide sequence
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| RefSeq Acc Id: |
ENSSSCP00000024881 ⟸ ENSSSCT00000026241 |
| RefSeq Acc Id: |
ENSSSCP00000080478 ⟸ ENSSSCT00000104472 |
Additional Information
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