USP2 (ubiquitin specific peptidase 2) - Rat Genome Database

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Gene: USP2 (ubiquitin specific peptidase 2) Sus scrofa
Analyze
Symbol: USP2
Name: ubiquitin specific peptidase 2
RGD ID: 13916763
Description: ENCODES a protein that exhibits cyclin binding (inferred); identical protein binding (inferred); thiol-dependent deubiquitinase (inferred); INVOLVED IN circadian behavior (ortholog); negative regulation of calcium ion transport (ortholog); negative regulation of skeletal muscle tissue development (ortholog); ASSOCIATED WITH Dwarfism (ortholog); hepatocellular carcinoma (ortholog); RASopathy (ortholog); FOUND IN cell cortex (ortholog); centrosome (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ubiquitin carboxyl-terminal hydrolase 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl946,563,480 - 46,590,265 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1946,563,469 - 46,590,392 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2951,595,416 - 51,622,353 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
USP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl946,563,480 - 46,590,265 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1946,563,469 - 46,590,392 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2951,595,416 - 51,622,353 (-)NCBISscrofa10.2Sscrofa10.2susScr3
USP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl11119,355,215 - 119,381,711 (-)EnsemblGRCh38hg38GRCh38
GRCh3811119,355,215 - 119,381,690 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3711119,225,925 - 119,252,400 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611118,732,163 - 118,757,575 (-)NCBINCBI36hg18NCBI36
Build 3411118,732,754 - 118,740,102NCBI
Celera11116,386,596 - 116,413,112 (-)NCBI
Cytogenetic Map11q23.3NCBI
HuRef11115,167,582 - 115,194,094 (-)NCBIHuRef
CHM1_111119,112,501 - 119,139,031 (-)NCBICHM1_1
Usp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39943,978,318 - 44,006,924 (+)NCBIGRCm39mm39
GRCm39 Ensembl943,978,318 - 44,006,924 (+)Ensembl
GRCm38944,067,021 - 44,095,627 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,067,021 - 44,095,627 (+)EnsemblGRCm38mm10GRCm38
MGSCv37943,875,104 - 43,903,710 (+)NCBIGRCm37mm9NCBIm37
MGSCv36943,818,162 - 43,845,472 (+)NCBImm8
Celera941,325,008 - 41,353,422 (+)NCBICelera
Cytogenetic Map9A5.1NCBI
Usp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2844,411,457 - 44,439,668 (+)NCBI
Rnor_6.0 Ensembl848,406,260 - 48,430,885 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0848,403,985 - 48,432,525 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0847,020,039 - 47,048,354 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,052,085 - 47,076,321 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1847,060,850 - 47,085,070 (+)NCBI
Celera844,001,154 - 44,025,278 (+)NCBICelera
Cytogenetic Map8q22NCBI
Usp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541220,433,302 - 20,457,493 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541220,435,778 - 20,461,898 (-)NCBIChiLan1.0ChiLan1.0
USP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111118,124,350 - 118,150,868 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11118,124,350 - 118,150,868 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011114,196,725 - 114,223,411 (-)NCBIMhudiblu_PPA_v0panPan3
USP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1514,525,685 - 14,550,914 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl514,525,797 - 14,549,291 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha514,579,281 - 14,604,451 (+)NCBI
ROS_Cfam_1.0514,469,193 - 14,494,315 (+)NCBI
UMICH_Zoey_3.1514,607,448 - 14,632,620 (+)NCBI
UNSW_CanFamBas_1.0514,511,479 - 14,536,582 (+)NCBI
UU_Cfam_GSD_1.0514,551,610 - 14,576,719 (+)NCBI
Usp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947101,362,834 - 101,388,611 (-)NCBI
SpeTri2.0NW_0049365424,284,243 - 4,310,545 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,733,097 - 110,760,119 (-)NCBI
ChlSab1.1 Ensembl1110,734,737 - 110,742,186 (-)Ensembl
Vero_WHO_p1.0NW_02366604315,273,873 - 15,301,399 (+)NCBI
Usp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478414,729,762 - 14,755,982 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 1 1
Low 10 2 3 1 22 1 2 1
Below cutoff 2 3 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000016486   ⟹   ENSSSCP00000016043
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl946,563,480 - 46,571,732 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000024719   ⟹   ENSSSCP00000023715
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl946,565,046 - 46,588,182 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000054930   ⟹   ENSSSCP00000051107
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl946,563,480 - 46,590,265 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000054945   ⟹   ENSSSCP00000035572
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl946,565,046 - 46,588,199 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000059048   ⟹   ENSSSCP00000038807
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl946,565,059 - 46,588,202 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000061854   ⟹   ENSSSCP00000039035
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl946,565,075 - 46,571,729 (-)Ensembl
RefSeq Acc Id: XM_003357325   ⟹   XP_003357373
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1946,563,815 - 46,571,787 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005667433   ⟹   XP_005667490
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1946,564,533 - 46,590,392 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005667434   ⟹   XP_005667491
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1946,563,815 - 46,588,210 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021062970   ⟹   XP_020918629
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1946,563,469 - 46,588,213 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021062971   ⟹   XP_020918630
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1946,563,469 - 46,590,347 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021062972   ⟹   XP_020918631
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1946,563,469 - 46,590,354 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021062973   ⟹   XP_020918632
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1946,563,469 - 46,585,233 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021062974   ⟹   XP_020918633
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1946,564,533 - 46,585,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021062975   ⟹   XP_020918634
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1946,564,533 - 46,582,102 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_020918631   ⟸   XM_021062972
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020918630   ⟸   XM_021062971
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020918629   ⟸   XM_021062970
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020918632   ⟸   XM_021062973
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005667491   ⟸   XM_005667434
- Peptide Label: isoform X2
- UniProtKB: I3LI16 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003357373   ⟸   XM_003357325
- Peptide Label: isoform X3
- UniProtKB: F1SAF6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005667490   ⟸   XM_005667433
- Peptide Label: isoform X2
- UniProtKB: I3LI16 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020918633   ⟸   XM_021062974
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020918634   ⟸   XM_021062975
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000051107   ⟸   ENSSSCT00000054930
RefSeq Acc Id: ENSSSCP00000035572   ⟸   ENSSSCT00000054945
RefSeq Acc Id: ENSSSCP00000038807   ⟸   ENSSSCT00000059048
RefSeq Acc Id: ENSSSCP00000023715   ⟸   ENSSSCT00000024719
RefSeq Acc Id: ENSSSCP00000016043   ⟸   ENSSSCT00000016486
RefSeq Acc Id: ENSSSCP00000039035   ⟸   ENSSSCT00000061854
Protein Domains
USP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015120 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070000177 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000016043 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000023715 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000035572 UniProtKB/TrEMBL
  ENSSSCP00000038807 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000039035 UniProtKB/TrEMBL
  ENSSSCP00000051107 UniProtKB/TrEMBL
  ENSSSCP00070000297 UniProtKB/TrEMBL
  ENSSSCP00070000306 UniProtKB/TrEMBL
  ENSSSCP00070000311 UniProtKB/TrEMBL
  ENSSSCP00070000319 UniProtKB/TrEMBL
  ENSSSCP00070000324 UniProtKB/TrEMBL
  ENSSSCP00070000328 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000016486 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000024719 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000054930 UniProtKB/TrEMBL
  ENSSSCT00000054945 UniProtKB/TrEMBL
  ENSSSCT00000059048 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000061854 UniProtKB/TrEMBL
  ENSSSCT00070000351 UniProtKB/TrEMBL
  ENSSSCT00070000360 UniProtKB/TrEMBL
  ENSSSCT00070000366 UniProtKB/TrEMBL
  ENSSSCT00070000375 UniProtKB/TrEMBL
  ENSSSCT00070000380 UniProtKB/TrEMBL
  ENSSSCT00070000385 UniProtKB/TrEMBL
InterPro Papain_like_cys_pep_sf UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/TrEMBL
  USP_CS UniProtKB/TrEMBL
  USP_dom UniProtKB/TrEMBL
KEGG Report ssc:100520041 UniProtKB/TrEMBL
NCBI Gene USP2 ENTREZGENE
Pfam UCH UniProtKB/TrEMBL
PROSITE USP_1 UniProtKB/TrEMBL
  USP_2 UniProtKB/TrEMBL
  USP_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF54001 UniProtKB/TrEMBL
UniProt A0A286ZV91_PIG UniProtKB/TrEMBL
  A0A287A4C3_PIG UniProtKB/TrEMBL
  A0A287A594_PIG UniProtKB/TrEMBL
  A0A287B4A2_PIG UniProtKB/TrEMBL
  A0A4X1SDS1_PIG UniProtKB/TrEMBL
  A0A4X1SDV1_PIG UniProtKB/TrEMBL
  A0A4X1SDZ6_PIG UniProtKB/TrEMBL
  A0A4X1SE87_PIG UniProtKB/TrEMBL
  A0A4X1SE91_PIG UniProtKB/TrEMBL
  A5YRZ0_PIG UniProtKB/TrEMBL
  F1SAF6 ENTREZGENE, UniProtKB/TrEMBL
  I3LI16 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94751 ENTREZGENE