DNPH1 (2'-deoxynucleoside 5'-phosphate N-hydrolase 1) - Rat Genome Database

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Gene: DNPH1 (2'-deoxynucleoside 5'-phosphate N-hydrolase 1) Sus scrofa
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Symbol: DNPH1
Name: 2'-deoxynucleoside 5'-phosphate N-hydrolase 1
RGD ID: 13915953
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN allantoin metabolic process (ortholog); dGMP catabolic process (ortholog); positive regulation of cell growth (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,263,820 - 38,266,695 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,263,819 - 38,267,361 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2743,764,179 - 43,767,693 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nucleus  (IBA,ISO)

Molecular Function

References

Genomics

Comparative Map Data
DNPH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,263,820 - 38,266,695 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,263,819 - 38,267,361 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2743,764,179 - 43,767,693 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DNPH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl643,225,629 - 43,229,481 (-)EnsemblGRCh38hg38GRCh38
GRCh38643,225,629 - 43,229,481 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37643,193,367 - 43,197,219 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36643,301,345 - 43,305,189 (-)NCBINCBI36hg18NCBI36
Celera644,745,576 - 44,749,420 (-)NCBI
Cytogenetic Map6p21.1NCBI
HuRef642,910,063 - 42,913,907 (-)NCBIHuRef
CHM1_1643,196,302 - 43,200,146 (-)NCBICHM1_1
Dnph1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,807,715 - 46,810,544 (+)NCBIGRCm39mm39
GRCm39 Ensembl1746,807,637 - 46,810,550 (+)Ensembl
GRCm381746,496,789 - 46,499,618 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,496,711 - 46,499,624 (+)EnsemblGRCm38mm10GRCm38
MGSCv371746,633,738 - 46,636,567 (+)NCBIGRCm37mm9NCBIm37
MGSCv361745,959,989 - 45,962,263 (+)NCBImm8
Celera1749,932,506 - 49,935,335 (+)NCBICelera
Cytogenetic Map17CNCBI
Dnph1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2914,481,296 - 14,484,034 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl914,481,066 - 14,484,022 (-)Ensembl
Rnor_6.0916,845,764 - 16,848,514 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl916,845,525 - 16,848,503 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0915,747,108 - 15,749,858 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.499,865,096 - 9,867,833 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.199,862,418 - 9,865,155 (-)NCBI
Celera912,229,311 - 12,232,048 (-)NCBICelera
Cytogenetic Map9q12NCBI
Dnph1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,145,737 - 9,147,387 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554379,145,737 - 9,147,388 (-)NCBIChiLan1.0ChiLan1.0
DNPH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1644,111,148 - 44,111,975 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0642,817,392 - 42,821,257 (-)NCBIMhudiblu_PPA_v0panPan3
DNPH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11211,715,215 - 11,718,622 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1211,715,271 - 11,718,717 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1211,741,713 - 11,745,559 (-)NCBI
ROS_Cfam_1.01212,197,074 - 12,200,947 (-)NCBI
UMICH_Zoey_3.11211,724,395 - 11,728,261 (-)NCBI
UNSW_CanFamBas_1.01211,808,785 - 11,812,597 (-)NCBI
UU_Cfam_GSD_1.01211,903,616 - 11,907,485 (-)NCBI
Dnph1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494647,217,364 - 47,219,582 (-)NCBI
SpeTri2.0NW_00493647616,740,643 - 16,742,831 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNPH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11728,923,202 - 28,927,227 (+)NCBI
Vero_WHO_p1.0NW_02366604443,287,459 - 43,291,712 (-)NCBI
Dnph1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475416,333,021 - 16,334,882 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system renal system reproductive system respiratory system
High
Medium
Low 3 3 3 4 10 2 1 1
Below cutoff 3 1 1 10 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000001854   ⟹   ENSSSCP00000001807
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl738,263,820 - 38,266,695 (-)Ensembl
RefSeq Acc Id: XM_001929288   ⟹   XP_001929323
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1738,263,819 - 38,266,946 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013977955   ⟹   XP_013833409
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1738,263,819 - 38,267,353 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021098744   ⟹   XP_020954403
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1738,263,819 - 38,267,361 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_001929323 (Get FASTA)   NCBI Sequence Viewer  
  XP_013833409 (Get FASTA)   NCBI Sequence Viewer  
  XP_020954403 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020954403   ⟸   XM_021098744
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013833409   ⟸   XM_013977955
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_001929323   ⟸   XM_001929288
- Peptide Label: isoform X2
- UniProtKB: F1RRM1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000001807   ⟸   ENSSSCT00000001854


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000026568 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070022611 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000001807 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070037837 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000001854 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070044914 UniProtKB/TrEMBL
InterPro DNPH1 UniProtKB/TrEMBL
  Nucleoside_deoxyribTrfase UniProtKB/TrEMBL
KEGG Report ssc:100157902 UniProtKB/TrEMBL
NCBI Gene DNPH1 ENTREZGENE
Pfam Nuc_deoxyrib_tr UniProtKB/TrEMBL
UniProt A0A4X1V874_PIG UniProtKB/TrEMBL
  F1RRM1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:87385 ENTREZGENE