CBY2 (chibby family member 2) - Rat Genome Database

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Gene: CBY2 (chibby family member 2) Sus scrofa
Analyze
Symbol: CBY2
Name: chibby family member 2
RGD ID: 13915666
Description: ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasmic vesicle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: spermatid associated; spermatid-associated protein; SPERT
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1121,612,493 - 21,622,446 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11121,612,319 - 21,719,817 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21122,057,078 - 22,067,206 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CBY2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1121,612,493 - 21,622,446 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11121,612,319 - 21,719,817 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21122,057,078 - 22,067,206 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CBY2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381345,702,320 - 45,714,559 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1345,702,320 - 45,714,559 (+)EnsemblGRCh38hg38GRCh38
GRCh371346,276,455 - 46,288,694 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361345,174,447 - 45,186,694 (+)NCBINCBI36Build 36hg18NCBI36
Celera1327,331,110 - 27,343,357 (+)NCBICelera
Cytogenetic Map13q14.13NCBI
HuRef1327,073,127 - 27,085,374 (+)NCBIHuRef
CHM1_11346,245,374 - 46,257,621 (+)NCBICHM1_1
T2T-CHM13v2.01344,923,623 - 44,935,862 (+)NCBIT2T-CHM13v2.0
Cby2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391475,820,274 - 75,830,616 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1475,820,317 - 75,830,556 (-)EnsemblGRCm39 Ensembl
GRCm381475,582,834 - 75,593,177 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1475,582,877 - 75,593,116 (-)EnsemblGRCm38mm10GRCm38
MGSCv371475,982,641 - 75,992,923 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361474,317,032 - 74,326,119 (-)NCBIMGSCv36mm8
Celera1473,084,953 - 73,095,127 (-)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1440.23NCBI
Cby2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81557,318,820 - 57,413,687 (-)NCBIGRCr8
mRatBN7.21550,909,435 - 51,004,449 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1550,909,436 - 50,934,633 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1555,059,019 - 55,067,414 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01556,177,345 - 56,185,740 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01553,004,443 - 53,012,896 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01557,642,576 - 57,738,383 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1557,642,577 - 57,651,041 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01561,353,104 - 61,361,569 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1550,539,217 - 50,547,288 (-)NCBICelera
Cytogenetic Map15q11NCBI
Cby2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555183,395,552 - 3,414,076 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555183,395,464 - 3,410,616 (+)NCBIChiLan1.0ChiLan1.0
CBY2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21445,676,673 - 45,689,244 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11336,730,717 - 36,743,288 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01327,317,454 - 27,329,698 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CBY2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1225,440,473 - 5,543,710 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl225,405,741 - 5,614,277 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha225,429,537 - 5,532,815 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0225,558,384 - 5,661,519 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl225,558,394 - 5,569,845 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1225,340,206 - 5,443,499 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0225,403,466 - 5,506,437 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0225,408,683 - 5,512,047 (-)NCBIUU_Cfam_GSD_1.0
Cby2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945155,849,176 - 155,863,046 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936857271,561 - 285,148 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936857271,561 - 285,148 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CBY2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1323,763,786 - 23,776,290 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl323,764,157 - 23,776,100 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605720,269,201 - 20,281,384 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cby2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247489,336,027 - 9,356,066 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247489,336,140 - 9,356,021 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CBY2
5953 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

reproductive system
High
Medium
Low 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000010319   ⟹   ENSSSCP00000010051
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1121,612,493 - 21,621,032 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000058133   ⟹   ENSSSCP00000034508
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1121,612,148 - 21,621,716 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000068989   ⟹   ENSSSCP00000065603
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1121,612,493 - 21,622,446 (-)Ensembl
RefSeq Acc Id: XM_013980539   ⟹   XP_013835993
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11121,612,319 - 21,620,702 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021065604   ⟹   XP_020921263
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11121,612,319 - 21,719,817 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020921263   ⟸   XM_021065604
- Peptide Label: isoform X2
- UniProtKB: A0A8D1J8M4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013835993   ⟸   XM_013980539
- Peptide Label: isoform X1
- UniProtKB: A0A8D1J8M4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000065603   ⟸   ENSSSCT00000068989
RefSeq Acc Id: ENSSSCP00000034508   ⟸   ENSSSCT00000058133
RefSeq Acc Id: ENSSSCP00000010051   ⟸   ENSSSCT00000010319


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009417 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00025010467 UniProtKB/TrEMBL
  ENSSSCG00035072886 UniProtKB/TrEMBL
  ENSSSCG00045038183 UniProtKB/TrEMBL
  ENSSSCG00055026664 UniProtKB/TrEMBL
  ENSSSCG00065047825 UniProtKB/TrEMBL
  ENSSSCG00070000312 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010319.3 UniProtKB/TrEMBL
  ENSSSCT00000068989.2 UniProtKB/TrEMBL
  ENSSSCT00025013760.1 UniProtKB/TrEMBL
  ENSSSCT00025013789.1 UniProtKB/TrEMBL
  ENSSSCT00025013820.1 UniProtKB/TrEMBL
  ENSSSCT00035098689.1 UniProtKB/TrEMBL
  ENSSSCT00045066104.1 UniProtKB/TrEMBL
  ENSSSCT00045066113.1 UniProtKB/TrEMBL
  ENSSSCT00045066129.1 UniProtKB/TrEMBL
  ENSSSCT00055052657.1 UniProtKB/TrEMBL
  ENSSSCT00055052709.1 UniProtKB/TrEMBL
  ENSSSCT00055052814.1 UniProtKB/TrEMBL
  ENSSSCT00065065409.1 UniProtKB/TrEMBL
  ENSSSCT00065065411.1 UniProtKB/TrEMBL
  ENSSSCT00065065423.1 UniProtKB/TrEMBL
  ENSSSCT00070000551.1 UniProtKB/TrEMBL
  ENSSSCT00070000555.1 UniProtKB/TrEMBL
  ENSSSCT00070000560.1 UniProtKB/TrEMBL
InterPro Chibby_fam UniProtKB/TrEMBL
KEGG Report ssc:100522270 UniProtKB/TrEMBL
NCBI Gene SPERT ENTREZGENE
PANTHER LEUCINE-RICH PROTEIN UniProtKB/TrEMBL
  PTHR21533:SF13 UniProtKB/TrEMBL
Pfam Chibby UniProtKB/TrEMBL
UniProt A0A4X1SE72_PIG UniProtKB/TrEMBL
  A0A4X1SE89_PIG UniProtKB/TrEMBL
  A0A4X1SEE5_PIG UniProtKB/TrEMBL
  A0A5G2QLZ0_PIG UniProtKB/TrEMBL
  A0A8D1J8M4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1JJI1_PIG UniProtKB/TrEMBL
  A0A8D1LAM7_PIG UniProtKB/TrEMBL
  F1RJZ6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:86234 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-13 CBY2  chibby family member 2  SPERT  spermatid associated  Symbol and/or name change 5135510 APPROVED