ARF1 (ADP ribosylation factor 1) - Rat Genome Database

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Gene: ARF1 (ADP ribosylation factor 1) Sus scrofa
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Symbol: ARF1
Name: ADP ribosylation factor 1
RGD ID: 13915630
Description: ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); magnesium ion binding (ortholog); INVOLVED IN actin filament organization (ortholog); dendritic spine organization (ortholog); Golgi to transport vesicle transport (ortholog); PARTICIPATES IN Arf family mediated signaling pathway; phosphatidylinositol 3-kinase class I signaling pathway; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH acute pancreatitis (ortholog); Breast Neoplasms (ortholog); Charcot-Marie-Tooth disease (ortholog); FOUND IN COPI-coated vesicle (ortholog); cytosol (ortholog); endomembrane system (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: ADP-ribosylation factor 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl251,219,667 - 51,237,639 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1251,219,597 - 51,237,640 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2253,874,559 - 53,892,570 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:20662810   PMID:32605744  


Genomics

Comparative Map Data
ARF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl251,219,667 - 51,237,639 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1251,219,597 - 51,237,640 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2253,874,559 - 53,892,570 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1228,082,660 - 228,099,212 (+)EnsemblGRCh38hg38GRCh38
GRCh381228,082,708 - 228,099,212 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371228,270,409 - 228,286,913 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361226,336,984 - 226,353,536 (+)NCBINCBI36hg18NCBI36
Build 341224,577,163 - 224,593,645NCBI
Celera1201,460,593 - 201,477,145 (+)NCBI
Cytogenetic Map1q42.13NCBI
HuRef1198,785,590 - 198,802,034 (+)NCBIHuRef
CHM1_11229,542,706 - 229,559,258 (+)NCBICHM1_1
Arf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,102,238 - 59,119,093 (-)NCBIGRCm39mm39
GRCm39 Ensembl1159,102,238 - 59,119,096 (-)Ensembl
GRCm381159,211,412 - 59,228,267 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,211,412 - 59,228,270 (-)EnsemblGRCm38mm10GRCm38
MGSCv371159,024,914 - 59,041,769 (-)NCBIGRCm37mm9NCBIm37
MGSCv361159,027,608 - 59,044,381 (-)NCBImm8
Celera1163,976,432 - 63,993,249 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
Arf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21043,997,983 - 44,014,543 (-)NCBI
Rnor_6.0 Ensembl1045,563,547 - 45,579,029 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01045,562,700 - 45,579,214 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01045,318,170 - 45,334,673 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,516,609 - 45,532,091 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11045,529,387 - 45,545,841 (-)NCBI
Celera1043,262,080 - 43,277,562 (-)NCBICelera
Cytogenetic Map10q22NCBI
Arf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955581319,942 - 335,112 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955581319,942 - 335,112 (-)NCBIChiLan1.0ChiLan1.0
ARF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11208,695,615 - 208,712,105 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1208,695,615 - 208,712,105 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01203,484,803 - 203,501,395 (+)NCBIMhudiblu_PPA_v0panPan3
ARF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.114835,476 - 836,424 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl14835,476 - 836,424 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha14315,387 - 316,334 (+)NCBI
ROS_Cfam_1.014554,686 - 568,903 (-)NCBI
UMICH_Zoey_3.114746,548 - 747,495 (-)NCBI
UNSW_CanFamBas_1.014527,341 - 528,288 (-)NCBI
UU_Cfam_GSD_1.014513,272 - 514,220 (-)NCBI
Arf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721387,776,242 - 87,778,336 (-)NCBI
SpeTri2.0NW_004936864117,510 - 119,612 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARF1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1251,628,836 - 1,644,502 (-)NCBI
ChlSab1.1 Ensembl251,628,751 - 1,644,499 (-)Ensembl
Arf1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624937857,795 - 871,089 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001160427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005661141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005661142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021077234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021077235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021077244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021077246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021077250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK232857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK238887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK239364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK391424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK394435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU850395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ627948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FP085478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01043405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000015283   ⟹   ENSSSCP00000014877
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl251,219,703 - 51,237,471 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000053447   ⟹   ENSSSCP00000036916
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl251,219,732 - 51,237,636 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000053892   ⟹   ENSSSCP00000034780
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl251,219,667 - 51,237,639 (+)Ensembl
RefSeq Acc Id: NM_001160427   ⟹   NP_001153899
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1251,235,555 - 51,236,511 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005661141   ⟹   XP_005661198
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1251,219,597 - 51,237,640 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005661142   ⟹   XP_005661199
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1251,219,650 - 51,237,640 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021077234   ⟹   XP_020932893
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1251,219,676 - 51,237,640 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021077235   ⟹   XP_020932894
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1251,219,649 - 51,237,640 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021077244   ⟹   XP_020932903
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1251,229,814 - 51,237,640 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021077246   ⟹   XP_020932905
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1251,219,990 - 51,237,640 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021077250   ⟹   XP_020932909
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1251,219,990 - 51,237,640 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005661198   ⟸   XM_005661141
- Peptide Label: isoform X3
- UniProtKB: C4MXZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020932894   ⟸   XM_021077235
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005661199   ⟸   XM_005661142
- Peptide Label: isoform X3
- UniProtKB: C4MXZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020932893   ⟸   XM_021077234
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020932905   ⟸   XM_021077246
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020932909   ⟸   XM_021077250
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020932903   ⟸   XM_021077244
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001153899   ⟸   NM_001160427
- UniProtKB: C4MXZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000014877   ⟸   ENSSSCT00000015283
RefSeq Acc Id: ENSSSCP00000036916   ⟸   ENSSSCT00000053447
RefSeq Acc Id: ENSSSCP00000034780   ⟸   ENSSSCT00000053892


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013992 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070017780 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000014877 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000034780 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000036916 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070029325 UniProtKB/TrEMBL
  ENSSSCP00070029338 UniProtKB/TrEMBL
  ENSSSCP00070029344 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000015283 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000053447 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000053892 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070035111 UniProtKB/TrEMBL
  ENSSSCT00070035128 UniProtKB/TrEMBL
  ENSSSCT00070035135 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase_ARF/SAR UniProtKB/TrEMBL
KEGG Report ssc:100301914 UniProtKB/TrEMBL
NCBI Gene ARF1 ENTREZGENE
Pfam Arf UniProtKB/TrEMBL
PRINTS SAR1GTPBP UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
TIGRFAMs small_GTP UniProtKB/TrEMBL
UniProt A0A286ZTI3_PIG UniProtKB/TrEMBL
  A0A286ZZ57_PIG UniProtKB/TrEMBL
  A0A4X1UH95_PIG UniProtKB/TrEMBL
  A0A4X1UMF7_PIG UniProtKB/TrEMBL
  C4MXZ1 ENTREZGENE, UniProtKB/TrEMBL
  F6Q3P3_PIG UniProtKB/TrEMBL
VGNC ID VGNC:96793 ENTREZGENE