TCAP (titin-cap) - Rat Genome Database

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Gene: TCAP (titin-cap) Sus scrofa
Analyze
Symbol: TCAP
Name: titin-cap
RGD ID: 13915565
Description: ENCODES a protein that exhibits molecular adaptor activity (ortholog); INVOLVED IN adult heart development (inferred); cardiac muscle cell development (inferred); cardiac muscle contraction (inferred); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2G (ortholog); Brugada syndrome (ortholog); cardiomyopathy (ortholog); FOUND IN I band (inferred); Z disc (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: telethonin; titin-cap (telethonin)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1222,651,664 - 22,653,722 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11222,651,666 - 22,652,904 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21223,107,378 - 23,108,618 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:24462753   PMID:30032202  


Genomics

Comparative Map Data
TCAP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1222,651,664 - 22,653,722 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11222,651,666 - 22,652,904 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21223,107,378 - 23,108,618 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TCAP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381739,665,349 - 39,666,554 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1739,665,349 - 39,666,554 (+)EnsemblGRCh38hg38GRCh38
GRCh371737,821,602 - 37,822,807 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361735,075,125 - 35,076,333 (+)NCBINCBI36Build 36hg18NCBI36
Build 341735,075,124 - 35,076,333NCBI
Celera1734,481,328 - 34,482,536 (+)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1733,615,530 - 33,616,738 (+)NCBIHuRef
CHM1_11738,057,420 - 38,058,628 (+)NCBICHM1_1
T2T-CHM13v2.01740,528,914 - 40,530,119 (+)NCBIT2T-CHM13v2.0
Tcap
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391198,274,637 - 98,275,779 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1198,274,637 - 98,275,779 (+)EnsemblGRCm39 Ensembl
GRCm381198,383,811 - 98,384,953 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1198,383,811 - 98,384,953 (+)EnsemblGRCm38mm10GRCm38
MGSCv371198,245,125 - 98,246,267 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361198,199,901 - 98,201,302 (+)NCBIMGSCv36mm8
Celera11108,038,035 - 108,039,177 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1161.75NCBI
Tcap
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81083,878,006 - 83,879,174 (+)NCBIGRCr8
mRatBN7.21083,381,719 - 83,382,887 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1083,381,719 - 83,382,887 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1088,326,068 - 88,327,236 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01087,824,153 - 87,825,321 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01083,216,804 - 83,217,972 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01086,337,705 - 86,338,414 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1086,337,728 - 86,338,411 (+)EnsemblRnor6.0rn6Rnor6.0
Celera1082,128,978 - 82,130,146 (+)NCBICelera
Cytogenetic Map10q31NCBI
Tcap
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545114,413,657 - 14,414,735 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545114,413,657 - 14,414,735 (+)NCBIChiLan1.0ChiLan1.0
TCAP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21925,288,846 - 25,290,210 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11727,183,653 - 27,186,577 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01717,622,318 - 17,625,252 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11717,839,139 - 17,841,500 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1717,839,139 - 17,842,727 (-)Ensemblpanpan1.1panPan2
TCAP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1922,811,792 - 22,812,980 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl922,794,177 - 22,813,012 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha922,284,243 - 22,285,432 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0923,605,436 - 23,606,624 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl923,605,424 - 23,606,633 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1922,378,080 - 22,379,268 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0922,639,078 - 22,640,266 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0922,764,185 - 22,765,373 (-)NCBIUU_Cfam_GSD_1.0
Tcap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560222,217,447 - 22,220,249 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649014,856,433 - 14,857,722 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649014,856,433 - 14,857,692 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCAP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11666,500,535 - 66,503,455 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1666,500,949 - 66,501,703 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607737,412,117 - 37,414,438 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcap
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247953,410,951 - 3,413,052 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247953,411,744 - 3,414,229 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TCAP
37 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High 2
Medium 2
Low 6 2 3 4 17 2 1
Below cutoff 4 1 5 1 2

Sequence


RefSeq Acc Id: ENSSSCT00000019053   ⟹   ENSSSCP00000018548
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1222,651,664 - 22,653,722 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000059720   ⟹   ENSSSCP00000041916
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1222,651,666 - 22,653,329 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000090135   ⟹   ENSSSCP00000070600
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1222,651,667 - 22,652,924 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000096335   ⟹   ENSSSCP00000079444
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1222,652,136 - 22,653,722 (-)Ensembl
RefSeq Acc Id: NM_001145754   ⟹   NP_001139226
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11222,651,666 - 22,652,904 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001139226   ⟸   NM_001145754
- UniProtKB: A4GR69 (UniProtKB/TrEMBL),   A0A8D0WY67 (UniProtKB/TrEMBL),   F6PVX2 (UniProtKB/TrEMBL),   A0A4X1UD26 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000018548   ⟸   ENSSSCT00000019053
RefSeq Acc Id: ENSSSCP00000070600   ⟸   ENSSSCT00000090135
RefSeq Acc Id: ENSSSCP00000041916   ⟸   ENSSSCT00000059720
RefSeq Acc Id: ENSSSCP00000079444   ⟸   ENSSSCT00000096335


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017500 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00030042694 UniProtKB/TrEMBL
  ENSSSCG00035056974 UniProtKB/TrEMBL
  ENSSSCG00045038058 UniProtKB/TrEMBL
  ENSSSCG00055003746 UniProtKB/TrEMBL
  ENSSSCG00065074921 UniProtKB/TrEMBL
  ENSSSCG00070016929 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000019053 ENTREZGENE
  ENSSSCT00000019053.5 UniProtKB/TrEMBL
  ENSSSCT00000090135.1 UniProtKB/TrEMBL
  ENSSSCT00000096335.1 UniProtKB/TrEMBL
  ENSSSCT00030059480.1 UniProtKB/TrEMBL
  ENSSSCT00035076177.1 UniProtKB/TrEMBL
  ENSSSCT00045065835.1 UniProtKB/TrEMBL
  ENSSSCT00055007351.1 UniProtKB/TrEMBL
  ENSSSCT00065103257.1 UniProtKB/TrEMBL
  ENSSSCT00070033338.1 UniProtKB/TrEMBL
Gene3D-CATH 2.20.160.10 UniProtKB/TrEMBL
InterPro Telethonin UniProtKB/TrEMBL
  Titin-like_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100271745 UniProtKB/TrEMBL
NCBI Gene TCAP ENTREZGENE
PANTHER PTHR15143 UniProtKB/TrEMBL
  TELETHONIN UniProtKB/TrEMBL
Pfam Telethonin UniProtKB/TrEMBL
UniProt A0A4X1UD26 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2RH32_PIG UniProtKB/TrEMBL
  A0A8D0WY67 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FMB0_PIG UniProtKB/TrEMBL
  A4GR69 ENTREZGENE, UniProtKB/TrEMBL
  F6PVX2 ENTREZGENE
UniProt Secondary F6PVX2 UniProtKB/TrEMBL
VGNC ID VGNC:93810 ENTREZGENE