MEF2C (myocyte enhancer factor 2C) - Rat Genome Database

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Gene: MEF2C (myocyte enhancer factor 2C) Sus scrofa
Analyze
Symbol: MEF2C
Name: myocyte enhancer factor 2C
RGD ID: 13913171
Description: ENCODES a protein that exhibits chromatin binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN B cell homeostasis (ortholog); B cell proliferation (ortholog); B cell receptor signaling pathway (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); autosomal dominant mental retardation 20 (ortholog); FOUND IN cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog); nuclear speck (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: MADS box transcription enhancer factor 2 polypeptide C; MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C); Myocyte enhancer factor 2C protein; myocyte-specific enhancer factor 2C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl296,122,407 - 96,296,842 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1296,122,407 - 96,296,927 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2298,794,388 - 98,885,272 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
B cell homeostasis  (ISS)
B cell proliferation  (ISS)
B cell receptor signaling pathway  (ISS)
blood vessel development  (ISO,ISS)
blood vessel remodeling  (ISO,ISS)
cardiac muscle cell differentiation  (ISO)
cardiac muscle hypertrophy in response to stress  (ISO)
cardiac ventricle formation  (ISO,ISS)
cardiocyte differentiation  (ISS)
cartilage morphogenesis  (ISO)
cell fate commitment  (ISO)
cell morphogenesis involved in neuron differentiation  (ISO)
cellular response to calcium ion  (ISS)
cellular response to drug  (ISS)
cellular response to fluid shear stress  (ISS)
cellular response to glucose stimulus  (ISO)
cellular response to growth factor stimulus  (ISO)
cellular response to lipopolysaccharide  (ISS)
cellular response to organic cyclic compound  (ISO)
cellular response to parathyroid hormone stimulus  (IEA,ISS)
cellular response to retinoic acid  (ISO)
cellular response to transforming growth factor beta stimulus  (IEA,ISS)
cellular response to trichostatin A  (ISS)
chondrocyte differentiation  (ISO,ISS)
dentate gyrus development  (ISO)
embryonic skeletal system morphogenesis  (ISO)
embryonic viscerocranium morphogenesis  (ISO)
endochondral ossification  (ISO,ISS)
epithelial cell proliferation involved in renal tubule morphogenesis  (ISS)
excitatory postsynaptic potential  (ISO)
germinal center formation  (ISS)
glomerulus morphogenesis  (ISS)
heart development  (IEA,ISO,ISS)
heart looping  (ISS)
humoral immune response  (ISS)
learning or memory  (ISS)
MAPK cascade  (IEA,ISS)
melanocyte differentiation  (ISS)
monocyte differentiation  (ISO)
muscle cell fate determination  (ISO,ISS)
myotube differentiation  (IEA)
negative regulation of blood vessel endothelial cell migration  (IEA)
negative regulation of epithelial cell proliferation  (ISO)
negative regulation of gene expression  (ISS)
negative regulation of neuron apoptotic process  (ISS)
negative regulation of ossification  (IEA,ISS)
negative regulation of transcription by RNA polymerase II  (IEA,ISO,ISS)
negative regulation of vascular associated smooth muscle cell migration  (IEA)
negative regulation of vascular associated smooth muscle cell proliferation  (IEA)
negative regulation of vascular endothelial cell proliferation  (IEA)
nephron tubule epithelial cell differentiation  (ISS)
neural crest cell differentiation  (ISS)
neuron development  (ISS)
neuron differentiation  (IEA,ISS)
neuron migration  (ISO)
osteoblast differentiation  (ISO,ISS)
outflow tract morphogenesis  (ISO,ISS)
platelet formation  (ISS)
positive regulation of alkaline phosphatase activity  (ISS)
positive regulation of B cell proliferation  (ISS)
positive regulation of behavioral fear response  (ISS)
positive regulation of bone mineralization  (ISS)
positive regulation of cardiac muscle cell differentiation  (IEA,ISS)
positive regulation of cardiac muscle cell proliferation  (ISS)
positive regulation of cardiac muscle hypertrophy  (ISO)
positive regulation of cell proliferation in bone marrow  (ISO)
positive regulation of gene expression  (IEA,ISS)
positive regulation of macrophage apoptotic process  (ISS)
positive regulation of myoblast differentiation  (IEA,ISS)
positive regulation of neuron differentiation  (ISS)
positive regulation of osteoblast differentiation  (ISS)
positive regulation of skeletal muscle cell differentiation  (IEA,ISS)
positive regulation of skeletal muscle tissue development  (IEA,ISS)
positive regulation of transcription by RNA polymerase II  (IBA,IEA,ISO,ISS)
positive regulation of transcription, DNA-templated  (ISO,ISS)
primary heart field specification  (ISS)
regulation of AMPA receptor activity  (ISO)
regulation of dendritic spine development  (ISO)
regulation of germinal center formation  (ISS)
regulation of megakaryocyte differentiation  (ISS)
regulation of neuron apoptotic process  (ISO)
regulation of neurotransmitter secretion  (ISO)
regulation of NMDA receptor activity  (ISO)
regulation of sarcomere organization  (ISO)
regulation of synapse assembly  (ISO)
regulation of synaptic activity  (ISS)
regulation of synaptic plasticity  (ISO)
regulation of synaptic transmission, glutamatergic  (ISO)
regulation of transcription by RNA polymerase II  (IBA)
regulation of transcription, DNA-templated  (ISO)
renal tubule morphogenesis  (ISS)
response to nutrient levels  (ISO)
response to vitamin E  (ISO)
roof of mouth development  (ISO)
secondary heart field specification  (ISS)
sinoatrial valve morphogenesis  (ISS)
skeletal muscle cell differentiation  (ISO)
skeletal muscle tissue development  (ISO,ISS)
smooth muscle cell differentiation  (ISO,ISS)
transdifferentiation  (ISO)
ventricular cardiac muscle cell differentiation  (ISS)

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:21136170   PMID:27354201  


Genomics

Comparative Map Data
MEF2C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl296,122,407 - 96,296,842 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1296,122,407 - 96,296,927 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2298,794,388 - 98,885,272 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MEF2C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl588,717,117 - 88,904,257 (-)EnsemblGRCh38hg38GRCh38
GRCh38588,717,117 - 88,904,105 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37588,012,934 - 88,199,922 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36588,051,922 - 88,214,780 (-)NCBINCBI36hg18NCBI36
Build 34588,051,921 - 88,214,780NCBI
Celera583,907,023 - 84,092,551 (-)NCBI
Cytogenetic Map5q14.3NCBI
HuRef583,218,989 - 83,404,187 (-)NCBIHuRef
CHM1_1587,447,103 - 87,632,656 (-)NCBICHM1_1
Mef2c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391383,652,136 - 83,815,198 (+)NCBIGRCm39mm39
GRCm39 Ensembl1383,652,153 - 83,815,199 (+)Ensembl
GRCm381383,504,017 - 83,667,079 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1383,504,034 - 83,667,080 (+)EnsemblGRCm38mm10GRCm38
MGSCv371383,643,033 - 83,806,684 (+)NCBIGRCm37mm9NCBIm37
MGSCv361383,981,532 - 84,141,286 (+)NCBImm8
Celera1385,760,645 - 85,921,930 (+)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1343.68NCBI
Mef2c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2213,973,299 - 14,136,065 (+)NCBI
Rnor_6.0 Ensembl211,658,568 - 11,822,787 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0211,658,534 - 11,822,788 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0211,521,053 - 11,684,949 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4212,331,078 - 12,346,520 (-)NCBIRGSC3.4rn4RGSC3.4
Celera210,288,159 - 10,449,731 (+)NCBICelera
Cytogenetic Map2q11NCBI
Mef2c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541822,537,285 - 22,701,434 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541822,537,388 - 22,701,434 (+)NCBIChiLan1.0ChiLan1.0
MEF2C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1526,620,837 - 26,786,426 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl526,681,700 - 26,786,426 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0526,480,489 - 26,650,813 (+)NCBIMhudiblu_PPA_v0panPan3
MEF2C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1319,778,997 - 19,948,203 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl319,779,007 - 19,943,852 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha321,145,574 - 21,314,826 (+)NCBI
ROS_Cfam_1.0319,687,661 - 19,856,893 (+)NCBI
UMICH_Zoey_3.1319,665,907 - 19,834,881 (+)NCBI
UNSW_CanFamBas_1.0319,629,618 - 19,798,838 (+)NCBI
UU_Cfam_GSD_1.0319,916,077 - 20,085,117 (+)NCBI
Mef2c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213175,400,303 - 175,565,279 (+)NCBI
SpeTri2.0NW_0049364697,060,480 - 7,225,497 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MEF2C
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1482,702,378 - 82,887,491 (-)NCBI
ChlSab1.1 Ensembl482,706,738 - 82,788,152 (-)Ensembl
Vero_WHO_p1.0NW_02366604931,746,488 - 31,916,073 (-)NCBI
Mef2c
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247438,072,871 - 8,235,174 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 4 2 5 2 14 1 1
Low 7 1 9 2 2 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001044540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021082279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK347230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK347269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY299510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU462930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ343149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF486522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FN424182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FN424183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01046491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000015454   ⟹   ENSSSCP00000015044
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl296,122,407 - 96,296,774 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000045699   ⟹   ENSSSCP00000036399
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl296,122,408 - 96,276,104 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000052217   ⟹   ENSSSCP00000055974
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl296,122,413 - 96,296,842 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000060135   ⟹   ENSSSCP00000037212
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl296,122,410 - 96,276,310 (-)Ensembl
RefSeq Acc Id: NM_001044540   ⟹   NP_001038005
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,126,180 - 96,217,063 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082099   ⟹   XP_020937758
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,122,407 - 96,276,358 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082100   ⟹   XP_020937759
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,378 - 96,276,410 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082102   ⟹   XP_020937761
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,296,888 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082108   ⟹   XP_020937767
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,296,855 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082111   ⟹   XP_020937770
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,281,145 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082115   ⟹   XP_020937774
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,281,145 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082119   ⟹   XP_020937778
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,220,442 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082124   ⟹   XP_020937783
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,220,442 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082125   ⟹   XP_020937784
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,276,114 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082128   ⟹   XP_020937787
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,276,169 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082130   ⟹   XP_020937789
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,219,430 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082131   ⟹   XP_020937790
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,219,430 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082135   ⟹   XP_020937794
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,243,004 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082136   ⟹   XP_020937795
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,218,757 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082141   ⟹   XP_020937800
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,277,238 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082142   ⟹   XP_020937801
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,277,416 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082146   ⟹   XP_020937805
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,125,031 - 96,276,002 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082149   ⟹   XP_020937808
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,125,031 - 96,276,010 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082151   ⟹   XP_020937810
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,125,031 - 96,296,888 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082155   ⟹   XP_020937814
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,125,031 - 96,296,858 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082163   ⟹   XP_020937822
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,378 - 96,276,167 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082171   ⟹   XP_020937830
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,378 - 96,276,145 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082174   ⟹   XP_020937833
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,378 - 96,296,902 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082185   ⟹   XP_020937844
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,378 - 96,296,872 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082195   ⟹   XP_020937854
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,125,005 - 96,276,136 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082203   ⟹   XP_020937862
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,276,139 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082207   ⟹   XP_020937866
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,296,898 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082212   ⟹   XP_020937871
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,296,855 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082215   ⟹   XP_020937874
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,296,856 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082221   ⟹   XP_020937880
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,122,407 - 96,276,174 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082223   ⟹   XP_020937882
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,378 - 96,276,173 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082227   ⟹   XP_020937886
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,281,050 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082229   ⟹   XP_020937888
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,276,126 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082233   ⟹   XP_020937892
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,276,113 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082235   ⟹   XP_020937894
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,277,260 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082238   ⟹   XP_020937897
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,276,041 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082239   ⟹   XP_020937898
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,124,581 - 96,276,107 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082243   ⟹   XP_020937902
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,122,407 - 96,276,114 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082245   ⟹   XP_020937904
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,122,407 - 96,276,167 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082248   ⟹   XP_020937907
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,122,407 - 96,296,927 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082251   ⟹   XP_020937910
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,122,407 - 96,296,839 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082255   ⟹   XP_020937914
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,122,407 - 96,220,440 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082259   ⟹   XP_020937918
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,122,407 - 96,276,105 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082261   ⟹   XP_020937920
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,122,407 - 96,276,105 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082266   ⟹   XP_020937925
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,122,407 - 96,276,252 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082273   ⟹   XP_020937932
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,122,407 - 96,296,888 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082274   ⟹   XP_020937933
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,122,407 - 96,296,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082279   ⟹   XP_020937938
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1296,122,407 - 96,276,103 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001038005 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937758 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937759 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937761 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937767 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937770 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937774 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937778 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937783 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937784 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937787 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937789 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937790 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937794 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937795 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937800 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937801 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937805 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937808 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937810 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937814 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937822 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937830 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937833 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937844 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937854 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937862 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937866 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937871 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937874 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937880 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937882 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937886 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937888 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937892 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937894 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937897 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937898 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937902 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937904 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937907 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937910 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937914 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937918 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937920 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937925 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937932 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937933 (Get FASTA)   NCBI Sequence Viewer  
  XP_020937938 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A4UTP7 (Get FASTA)   NCBI Sequence Viewer  
  AAQ74625 (Get FASTA)   NCBI Sequence Viewer  
  ABC68473 (Get FASTA)   NCBI Sequence Viewer  
  ABO77944 (Get FASTA)   NCBI Sequence Viewer  
  CAZ66786 (Get FASTA)   NCBI Sequence Viewer  
  CAZ66787 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020937907   ⟸   XM_021082248
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020937932   ⟸   XM_021082273
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_020937933   ⟸   XM_021082274
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_020937910   ⟸   XM_021082251
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020937758   ⟸   XM_021082099
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020937925   ⟸   XM_021082266
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_020937880   ⟸   XM_021082221
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020937904   ⟸   XM_021082245
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020937902   ⟸   XM_021082243
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020937920   ⟸   XM_021082261
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_020937918   ⟸   XM_021082259
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020937938   ⟸   XM_021082279
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_020937914   ⟸   XM_021082255
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020937833   ⟸   XM_021082174
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020937844   ⟸   XM_021082185
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020937759   ⟸   XM_021082100
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020937882   ⟸   XM_021082223
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020937822   ⟸   XM_021082163
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020937830   ⟸   XM_021082171
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020937866   ⟸   XM_021082207
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020937761   ⟸   XM_021082102
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020937874   ⟸   XM_021082215
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020937871   ⟸   XM_021082212
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020937767   ⟸   XM_021082108
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020937774   ⟸   XM_021082115
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020937770   ⟸   XM_021082111
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020937886   ⟸   XM_021082227
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020937801   ⟸   XM_021082142
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020937894   ⟸   XM_021082235
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020937800   ⟸   XM_021082141
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020937787   ⟸   XM_021082128
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020937862   ⟸   XM_021082203
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020937888   ⟸   XM_021082229
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020937784   ⟸   XM_021082125
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020937892   ⟸   XM_021082233
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020937898   ⟸   XM_021082239
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_020937897   ⟸   XM_021082238
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_020937794   ⟸   XM_021082135
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020937783   ⟸   XM_021082124
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020937778   ⟸   XM_021082119
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020937789   ⟸   XM_021082130
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020937790   ⟸   XM_021082131
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020937795   ⟸   XM_021082136
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020937854   ⟸   XM_021082195
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020937810   ⟸   XM_021082151
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020937814   ⟸   XM_021082155
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020937808   ⟸   XM_021082149
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020937805   ⟸   XM_021082146
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001038005   ⟸   NM_001044540
- UniProtKB: A4UTP7 (UniProtKB/Swiss-Prot),   A0A286ZUG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000015044   ⟸   ENSSSCT00000015454
RefSeq Acc Id: ENSSSCP00000037212   ⟸   ENSSSCT00000060135
RefSeq Acc Id: ENSSSCP00000036399   ⟸   ENSSSCT00000045699
RefSeq Acc Id: ENSSSCP00000055974   ⟸   ENSSSCT00000052217
Protein Domains
MADS-box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000014149 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070008139 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000015044 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000036399 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000037212 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000055974 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070013359 UniProtKB/TrEMBL
  ENSSSCP00070013386 UniProtKB/TrEMBL
  ENSSSCP00070013393 UniProtKB/TrEMBL
  ENSSSCP00070013396 UniProtKB/TrEMBL
  ENSSSCP00070013400 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000015454 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000045699 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000052217 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000060135 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070016143 UniProtKB/TrEMBL
  ENSSSCT00070016171 UniProtKB/TrEMBL
  ENSSSCT00070016178 UniProtKB/TrEMBL
  ENSSSCT00070016181 UniProtKB/TrEMBL
  ENSSSCT00070016185 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1810.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro HJURP_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MADS_MEF2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_MADSbox UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_MADSbox_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:733590 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene MEF2C ENTREZGENE
Pfam HJURP_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SRF-TF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS MADSDOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE MADS_BOX_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MADS_BOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART MADS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF55455 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A286ZUG7 ENTREZGENE, UniProtKB/TrEMBL
  A0A287A0E3_PIG UniProtKB/TrEMBL
  A0A287BHG1_PIG UniProtKB/TrEMBL
  A0A480TEY7_PIG UniProtKB/TrEMBL
  A0A4X1TCW4_PIG UniProtKB/TrEMBL
  A0A4X1TCY5_PIG UniProtKB/TrEMBL
  A0A4X1TDM3_PIG UniProtKB/TrEMBL
  A0A4X1TDM8_PIG UniProtKB/TrEMBL
  A0A4X1TDY0_PIG UniProtKB/TrEMBL
  A4UTP7 ENTREZGENE
  C6H118_PIG UniProtKB/TrEMBL
  F1RNZ8_PIG UniProtKB/TrEMBL
  MEF2C_PIG UniProtKB/Swiss-Prot
  Q6JVL4_PIG UniProtKB/TrEMBL
UniProt Secondary Q2L9Y8 UniProtKB/Swiss-Prot
VGNC ID VGNC:90127 ENTREZGENE