SKA2 (spindle and kinetochore associated complex subunit 2) - Rat Genome Database

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Gene: SKA2 (spindle and kinetochore associated complex subunit 2) Sus scrofa
Analyze
Symbol: SKA2
Name: spindle and kinetochore associated complex subunit 2
RGD ID: 13912428
Description: ENCODES a protein that exhibits microtubule binding (inferred); INVOLVED IN attachment of mitotic spindle microtubules to kinetochore (inferred); cell division (inferred); chromosome segregation (inferred); ASSOCIATED WITH genetic disease (ortholog); Joubert syndrome 1 (ortholog); mulibrey nanism (ortholog); FOUND IN chromosome (inferred); chromosome, centromeric region (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: spindle and kinetochore-associated protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1235,396,567 - 35,433,299 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11235,396,565 - 35,433,294 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21237,074,628 - 37,111,229 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:30032202  


Genomics

Comparative Map Data
SKA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1235,396,567 - 35,433,299 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11235,396,565 - 35,433,294 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21237,074,628 - 37,111,229 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SKA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381759,109,857 - 59,155,186 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1759,109,857 - 59,155,260 (-)EnsemblGRCh38hg38GRCh38
GRCh371757,187,218 - 57,232,547 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361754,542,090 - 54,587,582 (-)NCBINCBI36Build 36hg18NCBI36
Build 341754,543,742 - 54,587,343NCBI
Celera1753,649,948 - 53,695,816 (-)NCBICelera
Cytogenetic Map17q22NCBI
HuRef1752,547,893 - 52,593,823 (-)NCBIHuRef
CHM1_11757,252,805 - 57,298,295 (-)NCBICHM1_1
T2T-CHM13v2.01759,977,953 - 60,023,284 (-)NCBIT2T-CHM13v2.0
Ska2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391187,000,087 - 87,013,800 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1187,000,060 - 87,015,461 (+)EnsemblGRCm39 Ensembl
GRCm381187,109,261 - 87,122,974 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1187,109,234 - 87,124,635 (+)EnsemblGRCm38mm10GRCm38
MGSCv371186,922,763 - 86,936,476 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361186,925,456 - 86,939,169 (+)NCBIMGSCv36mm8
Celera1196,711,276 - 96,725,039 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.91NCBI
Ska2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81072,418,707 - 72,436,721 (+)NCBIGRCr8
mRatBN7.21071,921,474 - 71,939,461 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1071,921,582 - 71,939,458 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1076,532,084 - 76,549,889 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01076,036,988 - 76,054,793 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01071,501,512 - 71,519,317 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01074,413,989 - 74,431,922 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1074,413,989 - 74,431,922 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01075,668,741 - 75,686,674 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41075,383,081 - 75,400,888 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11075,397,450 - 75,415,258 (+)NCBI
Celera1070,837,768 - 70,855,580 (+)NCBICelera
Cytogenetic Map10q26NCBI
Ska2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554513,839,978 - 3,862,200 (+)NCBIChiLan1.0ChiLan1.0
SKA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21975,277,226 - 75,322,545 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11780,090,268 - 80,133,900 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01753,181,345 - 53,226,761 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11758,030,137 - 58,076,113 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1758,030,137 - 58,076,113 (-)Ensemblpanpan1.1panPan2
SKA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1933,692,089 - 33,728,398 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl933,692,302 - 33,728,281 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha932,925,938 - 32,962,035 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0934,497,651 - 34,533,814 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl934,495,485 - 34,533,816 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1933,283,420 - 33,319,561 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0933,572,430 - 33,608,584 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0933,659,101 - 33,695,267 (-)NCBIUU_Cfam_GSD_1.0
Ska2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560232,918,501 - 32,956,260 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364904,119,050 - 4,157,491 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SKA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11634,266,937 - 34,306,970 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1634,267,161 - 34,304,686 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660775,069,273 - 5,109,026 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in SKA2
985 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 1 1 3 4 1
Low 8 3 2 2 2 19 2 3 2
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000019213   ⟹   ENSSSCP00000018705
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1235,396,567 - 35,433,085 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000059661   ⟹   ENSSSCP00000056187
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1235,396,877 - 35,433,244 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000072015   ⟹   ENSSSCP00000061194
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1235,399,287 - 35,433,299 (-)Ensembl
RefSeq Acc Id: XM_003131674   ⟹   XP_003131722
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11235,396,565 - 35,433,294 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001299902
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11235,396,565 - 35,433,167 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002337200
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11235,396,565 - 35,433,168 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002337201
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11235,396,565 - 35,433,167 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003131722   ⟸   XM_003131674
- UniProtKB: A0A8D1HAN9 (UniProtKB/TrEMBL),   F1S259 (UniProtKB/TrEMBL),   A0A8D0P1Q4 (UniProtKB/TrEMBL),   A0A8D2BT61 (UniProtKB/TrEMBL),   A0A8D0YRY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000018705   ⟸   ENSSSCT00000019213
RefSeq Acc Id: ENSSSCP00000056187   ⟸   ENSSSCT00000059661
RefSeq Acc Id: ENSSSCP00000061194   ⟸   ENSSSCT00000072015
Protein Domains
Ska2 N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000034217 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005036892 UniProtKB/TrEMBL
  ENSSSCG00015051298 UniProtKB/TrEMBL
  ENSSSCG00025033524 UniProtKB/TrEMBL
  ENSSSCG00030018009 UniProtKB/TrEMBL
  ENSSSCG00035011025 UniProtKB/TrEMBL
  ENSSSCG00040019892 UniProtKB/TrEMBL
  ENSSSCG00045013661 UniProtKB/TrEMBL
  ENSSSCG00050071237 UniProtKB/TrEMBL
  ENSSSCG00055024450 UniProtKB/TrEMBL
  ENSSSCG00060071912 UniProtKB/TrEMBL
  ENSSSCG00065058036 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000019213 ENTREZGENE
  ENSSSCT00000019213.4 UniProtKB/TrEMBL
  ENSSSCT00000059661.3 UniProtKB/TrEMBL
  ENSSSCT00000072015.1 UniProtKB/TrEMBL
  ENSSSCT00005058924.1 UniProtKB/TrEMBL
  ENSSSCT00005058949.1 UniProtKB/TrEMBL
  ENSSSCT00015068256.1 UniProtKB/TrEMBL
  ENSSSCT00025045618.1 UniProtKB/TrEMBL
  ENSSSCT00030024853.1 UniProtKB/TrEMBL
  ENSSSCT00030024865.1 UniProtKB/TrEMBL
  ENSSSCT00035013818.1 UniProtKB/TrEMBL
  ENSSSCT00040026832.1 UniProtKB/TrEMBL
  ENSSSCT00045023307.1 UniProtKB/TrEMBL
  ENSSSCT00050097159.1 UniProtKB/TrEMBL
  ENSSSCT00055048133.1 UniProtKB/TrEMBL
  ENSSSCT00060098214.1 UniProtKB/TrEMBL
  ENSSSCT00065079413.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.1380 UniProtKB/TrEMBL
InterPro Ska2 UniProtKB/TrEMBL
  Ska2_N UniProtKB/TrEMBL
KEGG Report ssc:100520695 UniProtKB/TrEMBL
NCBI Gene SKA2 ENTREZGENE
PANTHER PTHR32017 UniProtKB/TrEMBL
  SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 2 UniProtKB/TrEMBL
Pfam SKA2 UniProtKB/TrEMBL
UniProt A0A287BJ54_PIG UniProtKB/TrEMBL
  A0A5G2QCC5_PIG UniProtKB/TrEMBL
  A0A8D0KC28_PIG UniProtKB/TrEMBL
  A0A8D0P1Q4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YRY2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1HAN9 ENTREZGENE
  A0A8D2BT61 ENTREZGENE, UniProtKB/TrEMBL
  F1S259 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8D1HAN9 UniProtKB/TrEMBL
VGNC ID VGNC:92898 ENTREZGENE