CD302 (CD302 molecule) - Rat Genome Database

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Gene: CD302 (CD302 molecule) Sus scrofa
Analyze
Symbol: CD302
Name: CD302 molecule
RGD ID: 13911551
Description: ENCODES a protein that exhibits carbohydrate binding (inferred); signaling receptor activity (inferred); INVOLVED IN phagocytosis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); FOUND IN cell cortex (inferred); cell projection (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CD302 antigen; type I transmembrane C-type lectin receptor DCL-1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1566,696,775 - 66,732,605 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11566,701,634 - 66,732,590 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21573,935,373 - 73,968,259 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
phagocytosis  (IEA,ISO)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17145712   PMID:17947679   PMID:30032202  


Genomics

Comparative Map Data
CD302
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1566,696,775 - 66,732,605 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11566,701,634 - 66,732,590 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21573,935,373 - 73,968,259 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD302
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382159,768,628 - 159,798,208 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2159,768,628 - 159,798,255 (-)EnsemblGRCh38hg38GRCh38
GRCh372160,625,139 - 160,654,719 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362160,333,610 - 160,362,999 (-)NCBINCBI36Build 36hg18NCBI36
Build 342160,450,870 - 160,480,260NCBI
Celera2154,236,985 - 154,266,601 (-)NCBICelera
Cytogenetic Map2q24.2NCBI
HuRef2152,509,042 - 152,537,708 (-)NCBIHuRef
CHM1_12160,631,512 - 160,661,120 (-)NCBICHM1_1
T2T-CHM13v2.02160,225,996 - 160,255,550 (-)NCBIT2T-CHM13v2.0
Cd302
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39260,082,337 - 60,114,828 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl260,082,337 - 60,114,832 (-)EnsemblGRCm39 Ensembl
GRCm38260,251,993 - 60,284,484 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl260,251,993 - 60,284,488 (-)EnsemblGRCm38mm10GRCm38
MGSCv37260,090,050 - 60,122,475 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36260,052,832 - 60,085,257 (-)NCBIMGSCv36mm8
Celera261,947,125 - 61,978,864 (-)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map234.5NCBI
Cd302
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8365,131,017 - 65,164,737 (-)NCBIGRCr8
mRatBN7.2344,722,324 - 44,756,045 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl344,722,325 - 44,756,045 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx348,083,413 - 48,117,107 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0356,666,985 - 56,700,674 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0354,432,113 - 54,465,827 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0346,327,382 - 46,361,092 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl346,327,383 - 46,361,092 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0351,435,506 - 51,469,216 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4341,958,036 - 41,991,705 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1341,854,408 - 41,888,077 (-)NCBI
Celera342,764,963 - 42,798,643 (-)NCBICelera
Cytogenetic Map3q21NCBI
CD302
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21362,459,405 - 62,489,537 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B62,474,381 - 62,504,485 (-)NCBINHGRI_mPanPan1
CD302
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_023666040154,389,025 - 154,403,504 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in CD302
619 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 2
Low 10 3 3 3 2 23 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000036951   ⟹   ENSSSCP00000039599
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1566,696,775 - 66,732,605 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000069202   ⟹   ENSSSCP00000062497
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1566,699,710 - 66,732,604 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000071305   ⟹   ENSSSCP00000064380
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1566,696,744 - 66,732,626 (-)Ensembl
RefSeq Acc Id: NM_001110425   ⟹   NP_001103895
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11566,701,634 - 66,732,590 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001103895   ⟸   NM_001110425
- Peptide Label: precursor
- UniProtKB: A8WH75 (UniProtKB/Swiss-Prot),   A0A5S6HHF9 (UniProtKB/TrEMBL),   A0A8D0UMW7 (UniProtKB/TrEMBL),   A0A8D1JFY4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000062497   ⟸   ENSSSCT00000069202
RefSeq Acc Id: ENSSSCP00000039599   ⟸   ENSSSCT00000036951
RefSeq Acc Id: ENSSSCP00000064380   ⟸   ENSSSCT00000071305
Protein Domains
C-type lectin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000036050 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025027764 UniProtKB/TrEMBL
  ENSSSCG00035008368 UniProtKB/TrEMBL
  ENSSSCG00045037134 UniProtKB/TrEMBL
  ENSSSCG00055015143 UniProtKB/TrEMBL
  ENSSSCG00060000467 UniProtKB/TrEMBL
  ENSSSCG00065073402 UniProtKB/TrEMBL
  ENSSSCG00070025809 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000036951 ENTREZGENE
  ENSSSCT00000036951.3 UniProtKB/TrEMBL
  ENSSSCT00000069202.1 UniProtKB/TrEMBL
  ENSSSCT00025037788.1 UniProtKB/TrEMBL
  ENSSSCT00035010454.1 UniProtKB/TrEMBL
  ENSSSCT00045064262.1 UniProtKB/TrEMBL
  ENSSSCT00055030116.1 UniProtKB/TrEMBL
  ENSSSCT00060000530.1 UniProtKB/TrEMBL
  ENSSSCT00065101179.1 UniProtKB/TrEMBL
  ENSSSCT00070051588.1 UniProtKB/Swiss-Prot
  ENSSSCT00070051589.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CTDL_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:100126280 UniProtKB/Swiss-Prot
NCBI Gene CD302 ENTREZGENE
PANTHER CD302 ANTIGEN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
SMART CLECT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A4X1VJG6_PIG UniProtKB/TrEMBL
  A0A5G2QKA6_PIG UniProtKB/TrEMBL
  A0A5S6HHF9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0UMW7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1JFY4 ENTREZGENE, UniProtKB/TrEMBL
  A8WH75 ENTREZGENE, UniProtKB/Swiss-Prot