ITGB1BP1 (integrin subunit beta 1 binding protein 1) - Rat Genome Database

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Gene: ITGB1BP1 (integrin subunit beta 1 binding protein 1) Sus scrofa
Analyze
Symbol: ITGB1BP1
Name: integrin subunit beta 1 binding protein 1
RGD ID: 13909790
Description: ENCODES a protein that exhibits GDP-dissociation inhibitor activity (inferred); integrin binding (inferred); kinase binding (inferred); INVOLVED IN blood vessel diameter maintenance (inferred); blood vessel endothelial cell proliferation involved in sprouting angiogenesis (inferred); cell-matrix adhesion (inferred); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH bone development disease (ortholog); Craniofacial Abnormalities (ortholog); genetic disease (ortholog); FOUND IN focal adhesion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: integrin beta-1-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3126,905,810 - 126,922,045 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13126,905,779 - 126,921,961 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23135,174,258 - 135,295,240 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
blood vessel diameter maintenance  (IEA)
blood vessel endothelial cell proliferation involved in sprouting angiogenesis  (IEA)
cell-matrix adhesion  (IEA)
cellular response to fibroblast growth factor stimulus  (IEA)
cellular response to vascular endothelial growth factor stimulus  (IEA)
integrin activation  (IEA)
integrin-mediated signaling pathway  (IEA)
myoblast migration  (IEA)
negative regulation of cell adhesion involved in substrate-bound cell migration  (IEA)
negative regulation of cell migration involved in sprouting angiogenesis  (IEA)
negative regulation of cell population proliferation  (IEA)
negative regulation of ERK1 and ERK2 cascade  (IEA)
negative regulation of fibroblast migration  (IEA)
negative regulation of focal adhesion assembly  (IBA,IEA)
negative regulation of protein targeting to membrane  (IEA)
negative regulation of substrate adhesion-dependent cell spreading  (IBA,IEA)
positive regulation of cell population proliferation  (IEA)
positive regulation of endothelial cell migration  (IEA)
positive regulation of focal adhesion assembly  (IEA)
positive regulation of Notch signaling pathway  (IEA)
positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction  (IEA)
positive regulation of protein targeting to membrane  (IEA)
positive regulation of stress fiber assembly  (IEA)
positive regulation of transcription by RNA polymerase II  (IEA)
protein localization to plasma membrane  (IEA)
receptor clustering  (IEA)
regulation of cell adhesion mediated by integrin  (IEA)
regulation of integrin-mediated signaling pathway  (IEA)
tube formation  (IEA)

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
ITGB1BP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3126,905,810 - 126,922,045 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13126,905,779 - 126,921,961 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23135,174,258 - 135,295,240 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ITGB1BP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3829,403,475 - 9,423,569 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl29,403,475 - 9,423,528 (-)EnsemblGRCh38hg38GRCh38
GRCh3729,543,604 - 9,563,698 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3629,463,264 - 9,481,094 (-)NCBINCBI36Build 36hg18NCBI36
Build 3429,496,414 - 9,514,233NCBI
Celera29,457,992 - 9,475,539 (-)NCBICelera
Cytogenetic Map2p25.1NCBI
HuRef29,391,245 - 9,409,126 (-)NCBIHuRef
CHM1_129,475,472 - 9,493,078 (-)NCBICHM1_1
T2T-CHM13v2.029,428,778 - 9,448,648 (-)NCBIT2T-CHM13v2.0
Itgb1bp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391221,317,247 - 21,336,285 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1221,290,826 - 21,336,285 (-)EnsemblGRCm39 Ensembl
GRCm381221,267,246 - 21,286,292 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1221,240,825 - 21,286,284 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1221,267,420 - 21,286,284 (-)EnsemblGRCm38mm10GRCm38
MGSCv371221,275,667 - 21,292,098 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361221,516,296 - 21,532,727 (-)NCBIMGSCv36mm8
Celera1219,618,971 - 19,635,133 (+)NCBICelera
Cytogenetic Map12A1.3NCBI
cM Map128.3NCBI
Itgb1bp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8646,549,994 - 46,564,735 (-)NCBIGRCr8
mRatBN7.2640,820,693 - 40,836,074 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl640,821,339 - 40,836,037 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx641,143,504 - 41,157,832 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0641,458,196 - 41,472,523 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0640,891,459 - 40,905,787 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0643,348,927 - 43,363,633 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl643,348,958 - 43,363,335 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0660,216,633 - 60,231,381 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4641,830,110 - 41,844,514 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1641,833,498 - 41,847,916 (-)NCBI
Celera640,108,431 - 40,122,817 (-)NCBICelera
Cytogenetic Map6q16NCBI
Itgb1bp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554875,134,135 - 5,146,449 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554875,134,135 - 5,146,449 (-)NCBIChiLan1.0ChiLan1.0
ITGB1BP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212117,103,099 - 117,119,941 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A117,107,072 - 117,123,914 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A9,396,553 - 9,413,408 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A9,559,416 - 9,576,899 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A9,556,857 - 9,577,155 (-)Ensemblpanpan1.1panPan2
ITGB1BP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1176,524,602 - 6,537,321 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl176,524,613 - 6,537,233 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha176,452,429 - 6,465,110 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0176,623,442 - 6,636,129 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl176,623,416 - 6,636,121 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1176,515,976 - 6,528,650 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0176,518,396 - 6,531,054 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0176,531,756 - 6,544,438 (-)NCBIUU_Cfam_GSD_1.0
Itgb1bp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629251,047,715 - 51,059,189 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365325,799,342 - 5,814,199 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365325,802,761 - 5,814,226 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITGB1BP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11498,226,666 - 98,244,094 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1498,230,100 - 98,248,862 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604514,079,143 - 14,096,391 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Itgb1bp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624969290,570 - 301,189 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624969290,601 - 307,152 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ITGB1BP1
811 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 1
Low 10 4 3 3 2 22 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000024089   ⟹   ENSSSCP00000020418
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3126,905,810 - 126,920,965 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000043061   ⟹   ENSSSCP00000034708
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3126,905,819 - 126,922,045 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000081448   ⟹   ENSSSCP00000064298
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3126,906,043 - 126,919,469 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000085102   ⟹   ENSSSCP00000069584
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3126,905,810 - 126,923,981 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000090344   ⟹   ENSSSCP00000071055
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3126,905,989 - 126,920,967 (+)Ensembl
RefSeq Acc Id: XM_003354928   ⟹   XP_003354976
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.13126,906,005 - 126,920,969 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005662751   ⟹   XP_005662808
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.13126,905,779 - 126,921,961 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005662752   ⟹   XP_005662809
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.13126,905,779 - 126,920,966 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021087871   ⟹   XP_020943530
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.13126,907,181 - 126,920,969 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005662808   ⟸   XM_005662751
- Peptide Label: isoform X2
- UniProtKB: A0A8D1Y404 (UniProtKB/TrEMBL),   A0A5G2RA96 (UniProtKB/TrEMBL),   A0A480YV36 (UniProtKB/TrEMBL),   A0A4X1UEE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005662809   ⟸   XM_005662752
- Peptide Label: isoform X3
- UniProtKB: I3L8Q8 (UniProtKB/TrEMBL),   A0A4X1UGU7 (UniProtKB/TrEMBL),   A0A8D0YLU1 (UniProtKB/TrEMBL),   A0A8D0YTR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003354976   ⟸   XM_003354928
- Peptide Label: isoform X2
- UniProtKB: A0A8D1Y404 (UniProtKB/TrEMBL),   A0A5G2RA96 (UniProtKB/TrEMBL),   A0A480YV36 (UniProtKB/TrEMBL),   A0A4X1UEE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943530   ⟸   XM_021087871
- Peptide Label: isoform X1
- UniProtKB: A0A480YV36 (UniProtKB/TrEMBL),   A0A4X1UEE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000071055   ⟸   ENSSSCT00000090344
RefSeq Acc Id: ENSSSCP00000069584   ⟸   ENSSSCT00000085102
RefSeq Acc Id: ENSSSCP00000064298   ⟸   ENSSSCT00000081448
RefSeq Acc Id: ENSSSCP00000020418   ⟸   ENSSSCT00000024089
RefSeq Acc Id: ENSSSCP00000034708   ⟸   ENSSSCT00000043061
Protein Domains
PID


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000029313 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005006349 UniProtKB/TrEMBL
  ENSSSCG00015075295 UniProtKB/TrEMBL
  ENSSSCG00025021665 UniProtKB/TrEMBL
  ENSSSCG00030052596 UniProtKB/TrEMBL
  ENSSSCG00035012300 UniProtKB/TrEMBL
  ENSSSCG00040045700 UniProtKB/TrEMBL
  ENSSSCG00045024252 UniProtKB/TrEMBL
  ENSSSCG00050019145 UniProtKB/TrEMBL
  ENSSSCG00055008917 UniProtKB/TrEMBL
  ENSSSCG00060049930 UniProtKB/TrEMBL
  ENSSSCG00065025355 UniProtKB/TrEMBL
  ENSSSCG00070016666 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000024089 ENTREZGENE
  ENSSSCT00000024089.4 UniProtKB/TrEMBL
  ENSSSCT00000043061.3 UniProtKB/TrEMBL
  ENSSSCT00000090344 ENTREZGENE
  ENSSSCT00000090344.2 UniProtKB/TrEMBL
  ENSSSCT00005009611.1 UniProtKB/TrEMBL
  ENSSSCT00005009639.1 UniProtKB/TrEMBL
  ENSSSCT00005009653.1 UniProtKB/TrEMBL
  ENSSSCT00005009675.1 UniProtKB/TrEMBL
  ENSSSCT00005009719.1 UniProtKB/TrEMBL
  ENSSSCT00005009770.1 UniProtKB/TrEMBL
  ENSSSCT00015101490.1 UniProtKB/TrEMBL
  ENSSSCT00015101609.1 UniProtKB/TrEMBL
  ENSSSCT00025029450.1 UniProtKB/TrEMBL
  ENSSSCT00025029468.1 UniProtKB/TrEMBL
  ENSSSCT00030073342.1 UniProtKB/TrEMBL
  ENSSSCT00030073371.1 UniProtKB/TrEMBL
  ENSSSCT00030073392.1 UniProtKB/TrEMBL
  ENSSSCT00035015481.1 UniProtKB/TrEMBL
  ENSSSCT00035015489.1 UniProtKB/TrEMBL
  ENSSSCT00035015498.1 UniProtKB/TrEMBL
  ENSSSCT00035015503.1 UniProtKB/TrEMBL
  ENSSSCT00035015508.1 UniProtKB/TrEMBL
  ENSSSCT00040061464.1 UniProtKB/TrEMBL
  ENSSSCT00040061540.1 UniProtKB/TrEMBL
  ENSSSCT00040061588.1 UniProtKB/TrEMBL
  ENSSSCT00045041465.1 UniProtKB/TrEMBL
  ENSSSCT00045041583.1 UniProtKB/TrEMBL
  ENSSSCT00050025883.1 UniProtKB/TrEMBL
  ENSSSCT00050025901.1 UniProtKB/TrEMBL
  ENSSSCT00055017451.1 UniProtKB/TrEMBL
  ENSSSCT00055017508.1 UniProtKB/TrEMBL
  ENSSSCT00055017563.1 UniProtKB/TrEMBL
  ENSSSCT00060067865.1 UniProtKB/TrEMBL
  ENSSSCT00060067872.1 UniProtKB/TrEMBL
  ENSSSCT00065033938.1 UniProtKB/TrEMBL
  ENSSSCT00065033940.1 UniProtKB/TrEMBL
  ENSSSCT00070032857.1 UniProtKB/TrEMBL
  ENSSSCT00070032865.1 UniProtKB/TrEMBL
  ENSSSCT00070032871.1 UniProtKB/TrEMBL
  ENSSSCT00070032880.1 UniProtKB/TrEMBL
Gene3D-CATH 6.20.360.10 UniProtKB/TrEMBL
InterPro Integrin-bd_ICAP-1 UniProtKB/TrEMBL
  PTB/PI_dom UniProtKB/TrEMBL
KEGG Report ssc:100622267 UniProtKB/TrEMBL
NCBI Gene ITGB1BP1 ENTREZGENE
PANTHER INTEGRIN BETA-1-BINDING PROTEIN 1 UniProtKB/TrEMBL
  PTHR32055 UniProtKB/TrEMBL
Pfam ICAP-1_inte_bdg UniProtKB/TrEMBL
SMART PTB UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt A0A286ZTB8_PIG UniProtKB/TrEMBL
  A0A480YV36 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UEE2_PIG UniProtKB/TrEMBL
  A0A4X1UEE6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UGU7 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2RA96 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0HZ59_PIG UniProtKB/TrEMBL
  A0A8D0HZ83_PIG UniProtKB/TrEMBL
  A0A8D0I378_PIG UniProtKB/TrEMBL
  A0A8D0XBZ3_PIG UniProtKB/TrEMBL
  A0A8D0YLU1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YTR9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YTS9_PIG UniProtKB/TrEMBL
  A0A8D1CLX8_PIG UniProtKB/TrEMBL
  A0A8D1Y404 ENTREZGENE, UniProtKB/TrEMBL
  I3L8Q8 ENTREZGENE
UniProt Secondary A0A8D0Q0T6 UniProtKB/TrEMBL
  I3L8Q8 UniProtKB/TrEMBL
VGNC ID VGNC:89241 ENTREZGENE