LOC102161030 (interferon lambda-4) - Rat Genome Database

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Gene: LOC102161030 (interferon lambda-4) Sus scrofa
Analyze
Symbol: LOC102161030
Name: interferon lambda-4
RGD ID: 13909668
Description: ENCODES a protein that exhibits cytokine activity (inferred); signaling receptor binding (inferred); INVOLVED IN cell surface receptor signaling pathway via JAK-STAT (inferred); defense response to virus (inferred); innate immune response (inferred); ASSOCIATED WITH acquired immunodeficiency syndrome (ortholog); autosomal hemophilia A (ortholog); Chronic Hepatitis B (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: IFNL4
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1647,946,679 - 47,948,710 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214143,801,636 - 143,804,466 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC102161030
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1647,946,679 - 47,948,710 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214143,801,636 - 143,804,466 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IFNL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381939,246,314 - 39,248,856 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1939,246,314 - 39,248,856 (-)EnsemblGRCh38hg38GRCh38
GRCh371939,736,954 - 39,739,496 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map19q13.2NCBI
HuRef1936,183,999 - 36,186,540 (-)NCBIHuRef
CHM1_11939,737,763 - 39,740,305 (-)NCBICHM1_1
T2T-CHM13v2.01942,050,583 - 42,053,125 (-)NCBIT2T-CHM13v2.0

Variants

.
Variants in LOC102161030
30 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system nervous system
High
Medium
Low
Below cutoff 1 1

Sequence


RefSeq Acc Id: XM_013990503   ⟹   XP_013845957
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1647,946,679 - 47,948,710 (-)NCBI
Sequence:
RefSeq Acc Id: XP_013845957   ⟸   XM_013990503
- UniProtKB: A0A287B7A8 (UniProtKB/TrEMBL),   A0A4X1SXM2 (UniProtKB/TrEMBL),   A0A8D1JXN0 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000032356 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025049191 UniProtKB/TrEMBL
  ENSSSCG00030027183 UniProtKB/TrEMBL
  ENSSSCG00035017025 UniProtKB/TrEMBL
  ENSSSCG00040034667 UniProtKB/TrEMBL
  ENSSSCG00045026925 UniProtKB/TrEMBL
  ENSSSCG00050006878 UniProtKB/TrEMBL
  ENSSSCG00055025113 UniProtKB/TrEMBL
  ENSSSCG00060064056 UniProtKB/TrEMBL
  ENSSSCG00065013344 UniProtKB/TrEMBL
  ENSSSCG00070004941 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000061103 ENTREZGENE
  ENSSSCT00000061103.2 UniProtKB/TrEMBL
  ENSSSCT00025066973.1 UniProtKB/TrEMBL
  ENSSSCT00030038017.1 UniProtKB/TrEMBL
  ENSSSCT00035021823.1 UniProtKB/TrEMBL
  ENSSSCT00040046643.1 UniProtKB/TrEMBL
  ENSSSCT00045045862.1 UniProtKB/TrEMBL
  ENSSSCT00050009408.1 UniProtKB/TrEMBL
  ENSSSCT00055049640.1 UniProtKB/TrEMBL
  ENSSSCT00060087414.1 UniProtKB/TrEMBL
  ENSSSCT00065017746.1 UniProtKB/TrEMBL
  ENSSSCT00070009352.1 UniProtKB/TrEMBL
  ENSSSCT00070009367.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.60 UniProtKB/TrEMBL
InterPro IFN-lambda_sf UniProtKB/TrEMBL
  INF_lambda UniProtKB/TrEMBL
KEGG Report ssc:102161030 UniProtKB/TrEMBL
NCBI Gene LOC102161030 ENTREZGENE
PANTHER INTERFERON LAMBDA-4 UniProtKB/TrEMBL
  PTHR31943 UniProtKB/TrEMBL
Pfam IL28A UniProtKB/TrEMBL
UniProt A0A287B7A8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SXM2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SYY2_PIG UniProtKB/TrEMBL
  A0A8D1JXN0 ENTREZGENE, UniProtKB/TrEMBL