FBLN2 (fibulin 2) - Rat Genome Database

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Gene: FBLN2 (fibulin 2) Sus scrofa
Analyze
Symbol: FBLN2
Name: fibulin 2
RGD ID: 13909234
Description: ENCODES a protein that exhibits calcium ion binding (inferred); extracellular matrix binding (inferred); extracellular matrix constituent conferring elasticity (inferred); INVOLVED IN positive regulation of cell-substrate adhesion (ortholog); ASSOCIATED WITH 3p deletion syndrome (ortholog); Colorectal Neoplasms (ortholog); genetic disease (ortholog); FOUND IN extracellular matrix (inferred); extracellular region (inferred); INTERACTS WITH ethanol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fibulin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1370,757,265 - 70,830,388 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11370,757,255 - 70,830,430 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21378,321,495 - 78,338,494 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
ethanol  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
FBLN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1370,757,265 - 70,830,388 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11370,757,255 - 70,830,430 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21378,321,495 - 78,338,494 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FBLN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38313,549,125 - 13,638,404 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl313,549,125 - 13,638,422 (+)EnsemblGRCh38hg38GRCh38
GRCh37313,590,625 - 13,679,904 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36313,565,625 - 13,654,923 (+)NCBINCBI36Build 36hg18NCBI36
Build 34313,565,624 - 13,654,922NCBI
Celera313,528,888 - 13,618,185 (+)NCBICelera
Cytogenetic Map3p25.1NCBI
HuRef313,524,043 - 13,613,389 (+)NCBIHuRef
CHM1_1313,540,651 - 13,629,945 (+)NCBICHM1_1
T2T-CHM13v2.0313,549,579 - 13,638,882 (+)NCBIT2T-CHM13v2.0
Fbln2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39691,189,442 - 91,249,522 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl691,189,437 - 91,249,522 (+)EnsemblGRCm39 Ensembl
GRCm38691,212,460 - 91,272,540 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl691,212,455 - 91,272,540 (+)EnsemblGRCm38mm10GRCm38
MGSCv37691,162,758 - 91,222,534 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36691,178,368 - 91,238,044 (+)NCBIMGSCv36mm8
Celera693,105,530 - 93,166,173 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map640.42NCBI
Fbln2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84125,261,464 - 125,321,030 (+)NCBIGRCr8
mRatBN7.24123,704,289 - 123,763,857 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4123,704,373 - 123,763,948 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.04122,835,237 - 122,895,127 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4122,835,436 - 122,895,121 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04187,650,676 - 187,710,505 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44125,380,549 - 125,441,079 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14125,667,843 - 125,678,673 (+)NCBI
Celera4112,624,458 - 112,683,251 (+)NCBICelera
Cytogenetic Map4q34NCBI
Fbln2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542912,788,468 - 12,880,543 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542912,791,926 - 12,880,544 (-)NCBIChiLan1.0ChiLan1.0
FBLN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2213,528,891 - 13,617,467 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1313,533,695 - 13,622,231 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0313,469,679 - 13,558,241 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1313,812,462 - 13,900,332 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl313,812,462 - 13,900,332 (+)Ensemblpanpan1.1panPan2
FBLN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1203,874,896 - 3,935,059 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl203,874,896 - 3,934,717 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha203,878,680 - 3,976,554 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0203,860,863 - 3,959,730 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl203,872,419 - 3,959,794 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1203,579,996 - 3,678,796 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0203,902,733 - 4,001,506 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0203,867,708 - 3,965,607 (+)NCBIUU_Cfam_GSD_1.0
Fbln2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494219,542,313 - 19,578,312 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936898112,687 - 148,686 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBLN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12249,540,316 - 49,630,380 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2249,564,822 - 49,630,409 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041116,866,783 - 116,956,971 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbln2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479612,570,139 - 12,636,987 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479612,570,112 - 12,637,019 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FBLN2
1202 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2 1 2 3
Low 8 2 3 4 20 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000012706   ⟹   ENSSSCP00000012373
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1370,757,265 - 70,830,388 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000023278   ⟹   ENSSSCP00000023563
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1370,757,267 - 70,830,388 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000047627   ⟹   ENSSSCP00000051424
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1370,757,267 - 70,807,368 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000060777   ⟹   ENSSSCP00000043136
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1370,757,267 - 70,830,388 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000088600   ⟹   ENSSSCP00000074197
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1370,757,265 - 70,830,388 (-)Ensembl
RefSeq Acc Id: XM_021069382   ⟹   XP_020925041
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11370,757,255 - 70,830,430 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021069383   ⟹   XP_020925042
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11370,757,255 - 70,830,430 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020925042   ⟸   XM_021069383
- Peptide Label: isoform X2
- UniProtKB: A0A4X1U3D6 (UniProtKB/TrEMBL),   A0A8D0MEN7 (UniProtKB/TrEMBL),   A0A8D0K6W9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020925041   ⟸   XM_021069382
- Peptide Label: isoform X1
- UniProtKB: A0A4X1U3C5 (UniProtKB/TrEMBL),   F1SPG5 (UniProtKB/TrEMBL),   A0A8D0MEM6 (UniProtKB/TrEMBL),   A0A8D1BE98 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000074197   ⟸   ENSSSCT00000088600
RefSeq Acc Id: ENSSSCP00000043136   ⟸   ENSSSCT00000060777
RefSeq Acc Id: ENSSSCP00000012373   ⟸   ENSSSCT00000012706
RefSeq Acc Id: ENSSSCP00000023563   ⟸   ENSSSCT00000023278
RefSeq Acc Id: ENSSSCP00000051424   ⟸   ENSSSCT00000047627
Protein Domains
Anaphylatoxin-like   EGF-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011609 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005036501 UniProtKB/TrEMBL
  ENSSSCG00015003651 UniProtKB/TrEMBL
  ENSSSCG00025008499 UniProtKB/TrEMBL
  ENSSSCG00030007825 UniProtKB/TrEMBL
  ENSSSCG00035081091 UniProtKB/TrEMBL
  ENSSSCG00040057034 UniProtKB/TrEMBL
  ENSSSCG00045010061 UniProtKB/TrEMBL
  ENSSSCG00055005198 UniProtKB/TrEMBL
  ENSSSCG00060046630 UniProtKB/TrEMBL
  ENSSSCG00065023158 UniProtKB/TrEMBL
  ENSSSCG00070014770 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012706 ENTREZGENE
  ENSSSCT00000012706.4 UniProtKB/TrEMBL
  ENSSSCT00000047627 ENTREZGENE
  ENSSSCT00000047627.2 UniProtKB/TrEMBL
  ENSSSCT00000088600.1 UniProtKB/TrEMBL
  ENSSSCT00005059919.1 UniProtKB/TrEMBL
  ENSSSCT00005060067.1 UniProtKB/TrEMBL
  ENSSSCT00005060095.1 UniProtKB/TrEMBL
  ENSSSCT00005060127.1 UniProtKB/TrEMBL
  ENSSSCT00005060158.1 UniProtKB/TrEMBL
  ENSSSCT00005060288.1 UniProtKB/TrEMBL
  ENSSSCT00015004995.1 UniProtKB/TrEMBL
  ENSSSCT00015005004.1 UniProtKB/TrEMBL
  ENSSSCT00015005019.1 UniProtKB/TrEMBL
  ENSSSCT00025011608.1 UniProtKB/TrEMBL
  ENSSSCT00025011619.1 UniProtKB/TrEMBL
  ENSSSCT00025011627.1 UniProtKB/TrEMBL
  ENSSSCT00025011639.1 UniProtKB/TrEMBL
  ENSSSCT00030010669.1 UniProtKB/TrEMBL
  ENSSSCT00030010677.1 UniProtKB/TrEMBL
  ENSSSCT00030010686.1 UniProtKB/TrEMBL
  ENSSSCT00030010695.1 UniProtKB/TrEMBL
  ENSSSCT00035111447.1 UniProtKB/TrEMBL
  ENSSSCT00035111460.1 UniProtKB/TrEMBL
  ENSSSCT00035111464.1 UniProtKB/TrEMBL
  ENSSSCT00035111468.1 UniProtKB/TrEMBL
  ENSSSCT00035111476.1 UniProtKB/TrEMBL
  ENSSSCT00035111478.1 UniProtKB/TrEMBL
  ENSSSCT00040078050.1 UniProtKB/TrEMBL
  ENSSSCT00040078579.1 UniProtKB/TrEMBL
  ENSSSCT00040078744.1 UniProtKB/TrEMBL
  ENSSSCT00040079058.1 UniProtKB/TrEMBL
  ENSSSCT00045017374.1 UniProtKB/TrEMBL
  ENSSSCT00045017531.1 UniProtKB/TrEMBL
  ENSSSCT00045017589.1 UniProtKB/TrEMBL
  ENSSSCT00045017645.1 UniProtKB/TrEMBL
  ENSSSCT00055010231.1 UniProtKB/TrEMBL
  ENSSSCT00055010271.1 UniProtKB/TrEMBL
  ENSSSCT00055010306.1 UniProtKB/TrEMBL
  ENSSSCT00055010331.1 UniProtKB/TrEMBL
  ENSSSCT00055010434.1 UniProtKB/TrEMBL
  ENSSSCT00055010492.1 UniProtKB/TrEMBL
  ENSSSCT00060063535.1 UniProtKB/TrEMBL
  ENSSSCT00065030881.1 UniProtKB/TrEMBL
  ENSSSCT00065030903.1 UniProtKB/TrEMBL
  ENSSSCT00065030909.1 UniProtKB/TrEMBL
  ENSSSCT00070029038.1 UniProtKB/TrEMBL
  ENSSSCT00070029049.1 UniProtKB/TrEMBL
  ENSSSCT00070029063.1 UniProtKB/TrEMBL
  ENSSSCT00070029070.1 UniProtKB/TrEMBL
Gene3D-CATH Laminin UniProtKB/TrEMBL
InterPro Anaphylatoxin/fibulin UniProtKB/TrEMBL
  cEGF UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
NCBI Gene FBLN2 ENTREZGENE
PANTHER EGF-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  FIBRILLIN-RELATED UniProtKB/TrEMBL
  FIBULIN 2 UniProtKB/TrEMBL
  FIBULIN-1 UniProtKB/TrEMBL
  VACUOLAR-SORTING RECEPTOR 3-RELATED UniProtKB/TrEMBL
Pfam ANATO UniProtKB/TrEMBL
  cEGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  FXa_inhibition UniProtKB/TrEMBL
PROSITE ANAPHYLATOXIN_1 UniProtKB/TrEMBL
  ANAPHYLATOXIN_2 UniProtKB/TrEMBL
  ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
SMART ANATO UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
UniProt A0A287B5Q1_PIG UniProtKB/TrEMBL
  A0A4X1U3C5 ENTREZGENE
  A0A4X1U3D6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U5X1_PIG UniProtKB/TrEMBL
  A0A4X1U7Y1_PIG UniProtKB/TrEMBL
  A0A5G2RB13_PIG UniProtKB/TrEMBL
  A0A8D0K5R9_PIG UniProtKB/TrEMBL
  A0A8D0K6W9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0KBH7_PIG UniProtKB/TrEMBL
  A0A8D0LUU4_PIG UniProtKB/TrEMBL
  A0A8D0MEM6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MEN7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1BE98 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1BR29_PIG UniProtKB/TrEMBL
  A0A8D1F7I7_PIG UniProtKB/TrEMBL
  A0A8D1F8R5_PIG UniProtKB/TrEMBL
  A0A8D1H447_PIG UniProtKB/TrEMBL
  A0A8D1H4N6_PIG UniProtKB/TrEMBL
  A0A8D1H9Q0_PIG UniProtKB/TrEMBL
  A0A8D1KG67_PIG UniProtKB/TrEMBL
  A0A8D1KGJ1_PIG UniProtKB/TrEMBL
  A0A8D1KTM4_PIG UniProtKB/TrEMBL
  A0A8D1PMD7_PIG UniProtKB/TrEMBL
  A0A8D1PPV3_PIG UniProtKB/TrEMBL
  A0A8D1PTQ7_PIG UniProtKB/TrEMBL
  A0A8D1Y2I3_PIG UniProtKB/TrEMBL
  F1SPG5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1U3C5 UniProtKB/TrEMBL
VGNC ID VGNC:108657 ENTREZGENE