TTC21A (tetratricopeptide repeat domain 21A) - Rat Genome Database

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Gene: TTC21A (tetratricopeptide repeat domain 21A) Sus scrofa
Analyze
Symbol: TTC21A
Name: tetratricopeptide repeat domain 21A
RGD ID: 13909112
Description: INVOLVED IN flagellated sperm motility (inferred); intraciliary retrograde transport (inferred); protein localization to cilium (inferred); ASSOCIATED WITH genetic disease (ortholog); spermatogenic failure 37 (ortholog); FOUND IN cilium (inferred); intraciliary transport particle A (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tetratricopeptide repeat protein 21A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1323,797,518 - 23,830,332 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11323,797,518 - 23,830,334 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21326,057,100 - 26,090,203 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TTC21A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1323,797,518 - 23,830,332 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11323,797,518 - 23,830,334 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21326,057,100 - 26,090,203 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TTC21A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38339,107,680 - 39,138,900 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl339,107,680 - 39,138,903 (+)EnsemblGRCh38hg38GRCh38
GRCh37339,149,171 - 39,180,391 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36339,124,156 - 39,155,398 (+)NCBINCBI36Build 36hg18NCBI36
Build 34339,124,198 - 39,155,394NCBI
Celera339,089,656 - 39,120,906 (+)NCBICelera
Cytogenetic Map3p22.2NCBI
HuRef339,191,073 - 39,222,318 (+)NCBIHuRef
CHM1_1339,100,229 - 39,131,478 (+)NCBICHM1_1
T2T-CHM13v2.0339,119,844 - 39,151,076 (+)NCBIT2T-CHM13v2.0
Ttc21a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399119,766,656 - 119,798,496 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9119,766,672 - 119,796,859 (+)EnsemblGRCm39 Ensembl
GRCm389119,937,589 - 119,969,430 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9119,937,606 - 119,967,793 (+)EnsemblGRCm38mm10GRCm38
MGSCv379119,846,724 - 119,876,911 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369119,786,304 - 119,816,491 (+)NCBIMGSCv36mm8
Celera9120,404,834 - 120,435,102 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map971.33NCBI
Ttc21a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88128,544,684 - 128,580,464 (+)NCBIGRCr8
mRatBN7.28119,667,044 - 119,702,028 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8119,666,933 - 119,702,456 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.08128,622,414 - 128,657,199 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8128,622,428 - 128,657,955 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08127,824,105 - 127,858,427 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48124,895,329 - 124,929,673 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18124,916,314 - 124,949,410 (+)NCBI
Celera8118,813,990 - 118,848,613 (+)NCBICelera
Cytogenetic Map8q32NCBI
Ttc21a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542724,833,071 - 24,862,473 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542724,833,021 - 24,862,199 (-)NCBIChiLan1.0ChiLan1.0
TTC21A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2239,059,147 - 39,090,471 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1339,063,909 - 39,095,233 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0339,003,730 - 39,035,183 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1339,284,159 - 39,315,583 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl339,284,480 - 39,315,375 (+)Ensemblpanpan1.1panPan2
TTC21A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1238,776,252 - 8,812,480 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl238,781,582 - 8,811,031 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha238,816,088 - 8,848,339 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0239,065,036 - 9,097,061 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl239,065,022 - 9,097,060 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1238,878,708 - 8,910,708 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0239,020,973 - 9,053,234 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0239,014,406 - 9,046,449 (+)NCBIUU_Cfam_GSD_1.0
Ttc21a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118195,223,584 - 195,256,561 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647328,362,274 - 28,395,010 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647328,362,238 - 28,395,134 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC21A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.115276,965 - 308,194 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl15277,078 - 308,194 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660639,004,096 - 9,035,461 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttc21a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247311,844,152 - 1,873,273 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247311,844,044 - 1,873,398 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TTC21A
1209 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 8 2 3 5 1 23 2 3 3
Below cutoff 2 2 1

Sequence


RefSeq Acc Id: ENSSSCT00000012331   ⟹   ENSSSCP00000012009
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1323,797,530 - 23,830,324 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000022750   ⟹   ENSSSCP00000020125
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1323,797,518 - 23,830,331 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000048987   ⟹   ENSSSCP00000048074
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1323,797,100 - 23,830,332 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000078419   ⟹   ENSSSCP00000073826
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1323,797,522 - 23,830,332 (+)Ensembl
RefSeq Acc Id: XM_013981474   ⟹   XP_013836928
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11323,797,555 - 23,830,334 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021071679   ⟹   XP_020927338
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11323,797,518 - 23,830,334 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020927338   ⟸   XM_021071679
- Peptide Label: isoform X2
- UniProtKB: A0A8D1AH99 (UniProtKB/TrEMBL),   I3L7W7 (UniProtKB/TrEMBL),   A0A8D0I0P5 (UniProtKB/TrEMBL),   A0A8D0MDF2 (UniProtKB/TrEMBL),   A0A8D0VWD6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013836928   ⟸   XM_013981474
- Peptide Label: isoform X1
- UniProtKB: A0A8D0LEU3 (UniProtKB/TrEMBL),   A0A8D0MDH3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000073826   ⟸   ENSSSCT00000078419
RefSeq Acc Id: ENSSSCP00000048074   ⟸   ENSSSCT00000048987
RefSeq Acc Id: ENSSSCP00000012009   ⟸   ENSSSCT00000012331
RefSeq Acc Id: ENSSSCP00000020125   ⟸   ENSSSCT00000022750


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011263 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005003953 UniProtKB/TrEMBL
  ENSSSCG00015003460 UniProtKB/TrEMBL
  ENSSSCG00025043581 UniProtKB/TrEMBL
  ENSSSCG00030018297 UniProtKB/TrEMBL
  ENSSSCG00035055902 UniProtKB/TrEMBL
  ENSSSCG00045005509 UniProtKB/TrEMBL
  ENSSSCG00055012913 UniProtKB/TrEMBL
  ENSSSCG00065076778 UniProtKB/TrEMBL
  ENSSSCG00070011598 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012331 ENTREZGENE
  ENSSSCT00000012331.4 UniProtKB/TrEMBL
  ENSSSCT00000022750 ENTREZGENE
  ENSSSCT00000022750.2 UniProtKB/TrEMBL
  ENSSSCT00000078419.1 UniProtKB/TrEMBL
  ENSSSCT00005005788.1 UniProtKB/TrEMBL
  ENSSSCT00005005835.1 UniProtKB/TrEMBL
  ENSSSCT00005005907.1 UniProtKB/TrEMBL
  ENSSSCT00005005982.1 UniProtKB/TrEMBL
  ENSSSCT00005006093.1 UniProtKB/TrEMBL
  ENSSSCT00015004490.1 UniProtKB/TrEMBL
  ENSSSCT00015004550.1 UniProtKB/TrEMBL
  ENSSSCT00025059541.1 UniProtKB/TrEMBL
  ENSSSCT00025059897.1 UniProtKB/TrEMBL
  ENSSSCT00025060223.1 UniProtKB/TrEMBL
  ENSSSCT00030025280.1 UniProtKB/TrEMBL
  ENSSSCT00030025298.1 UniProtKB/TrEMBL
  ENSSSCT00030025313.1 UniProtKB/TrEMBL
  ENSSSCT00035074590.1 UniProtKB/TrEMBL
  ENSSSCT00035074611.1 UniProtKB/TrEMBL
  ENSSSCT00035074627.1 UniProtKB/TrEMBL
  ENSSSCT00045009169.1 UniProtKB/TrEMBL
  ENSSSCT00045009180.1 UniProtKB/TrEMBL
  ENSSSCT00045009191.1 UniProtKB/TrEMBL
  ENSSSCT00045009202.1 UniProtKB/TrEMBL
  ENSSSCT00055025432.1 UniProtKB/TrEMBL
  ENSSSCT00055025508.1 UniProtKB/TrEMBL
  ENSSSCT00055025635.1 UniProtKB/TrEMBL
  ENSSSCT00065106111.1 UniProtKB/TrEMBL
  ENSSSCT00065106136.1 UniProtKB/TrEMBL
  ENSSSCT00070022825.1 UniProtKB/TrEMBL
  ENSSSCT00070022866.1 UniProtKB/TrEMBL
  ENSSSCT00070022873.1 UniProtKB/TrEMBL
  ENSSSCT00070022887.1 UniProtKB/TrEMBL
  ENSSSCT00070022899.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
  TTC21A/TTC21B UniProtKB/TrEMBL
NCBI Gene TTC21A ENTREZGENE
PANTHER PTHR14699 UniProtKB/TrEMBL
  TETRATRICOPEPTIDE REPEAT PROTEIN 21A UniProtKB/TrEMBL
Pfam TPR_16 UniProtKB/TrEMBL
  TPR_19 UniProtKB/TrEMBL
  TPR_8 UniProtKB/TrEMBL
PROSITE TPR UniProtKB/TrEMBL
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP HCP-like UniProtKB/TrEMBL
  SSF48452 UniProtKB/TrEMBL
UniProt A0A4X1TPB7_PIG UniProtKB/TrEMBL
  A0A4X1TPG3_PIG UniProtKB/TrEMBL
  A0A4X1TU68_PIG UniProtKB/TrEMBL
  A0A4X1TU75_PIG UniProtKB/TrEMBL
  A0A4X1TUH6_PIG UniProtKB/TrEMBL
  A0A5G2R9T9_PIG UniProtKB/TrEMBL
  A0A8D0HTD7_PIG UniProtKB/TrEMBL
  A0A8D0HTT9_PIG UniProtKB/TrEMBL
  A0A8D0I0P5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0LEU3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0LEV1_PIG UniProtKB/TrEMBL
  A0A8D0MDF2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MDH3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0SAD7_PIG UniProtKB/TrEMBL
  A0A8D0VVG4_PIG UniProtKB/TrEMBL
  A0A8D0VWC4_PIG UniProtKB/TrEMBL
  A0A8D0VWD6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1A8R5_PIG UniProtKB/TrEMBL
  A0A8D1AA84_PIG UniProtKB/TrEMBL
  A0A8D1AH99 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1GLQ9_PIG UniProtKB/TrEMBL
  A0A8D1GVR7_PIG UniProtKB/TrEMBL
  A0A8D1KQV7_PIG UniProtKB/TrEMBL
  A0A8D1QDS8_PIG UniProtKB/TrEMBL
  A0A8D1QN84_PIG UniProtKB/TrEMBL
  A0A8D1QQ20_PIG UniProtKB/TrEMBL
  F1SJS4_PIG UniProtKB/TrEMBL
  I3L7W7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94538 ENTREZGENE