PGAM2 (phosphoglycerate mutase 2) - Rat Genome Database

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Gene: PGAM2 (phosphoglycerate mutase 2) Sus scrofa
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Symbol: PGAM2
Name: phosphoglycerate mutase 2
RGD ID: 13908214
Description: ENCODES a protein that exhibits 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity (ortholog); phosphoglycerate mutase activity (ortholog); INVOLVED IN canonical glycolysis (ortholog); gluconeogenesis (ortholog); glycolytic process (ortholog); PARTICIPATES IN Fanconi syndrome pathway; fructose-1,6-bisphosphatase deficiency pathway; gluconeogenesis pathway; ASSOCIATED WITH Dimauro Disease (ortholog); genetic disease (ortholog); myoglobinuria (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1848,710,347 - 48,713,862 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11848,693,832 - 48,712,787 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21853,423,580 - 53,425,838 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)

References
Additional References at PubMed
PMID:18499067   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PGAM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1848,710,347 - 48,713,862 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11848,693,832 - 48,712,787 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21853,423,580 - 53,425,838 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PGAM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38744,062,727 - 44,065,567 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl744,062,727 - 44,065,567 (-)EnsemblGRCh38hg38GRCh38
GRCh37744,102,326 - 44,105,166 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36744,068,851 - 44,071,688 (-)NCBINCBI36Build 36hg18NCBI36
Build 34743,875,566 - 43,878,403NCBI
Celera744,200,271 - 44,203,131 (-)NCBICelera
Cytogenetic Map7p13NCBI
HuRef743,987,609 - 43,990,469 (-)NCBIHuRef
CHM1_1744,106,200 - 44,109,060 (-)NCBICHM1_1
T2T-CHM13v2.0744,221,224 - 44,224,064 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2744,141,816 - 44,144,674 (-)NCBI
Pgam2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39115,751,637 - 5,753,796 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl115,751,640 - 5,753,733 (-)EnsemblGRCm39 Ensembl
GRCm38115,801,637 - 5,803,796 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl115,801,640 - 5,803,733 (-)EnsemblGRCm38mm10GRCm38
MGSCv37115,701,640 - 5,703,799 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36115,701,647 - 5,703,736 (-)NCBIMGSCv36mm8
Celera116,291,798 - 6,293,956 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map113.87NCBI
Pgam2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81484,895,763 - 84,897,874 (-)NCBIGRCr8
mRatBN7.21480,681,796 - 80,683,907 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1480,681,776 - 80,683,940 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1485,084,326 - 85,086,436 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01486,324,429 - 86,326,539 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01482,773,751 - 82,775,861 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01486,045,005 - 86,047,116 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1486,044,969 - 86,047,162 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01486,736,814 - 86,738,925 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41486,466,055 - 86,468,166 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11486,485,199 - 86,487,311 (-)NCBI
Celera1479,566,749 - 79,568,860 (-)NCBICelera
Cytogenetic Map14q21NCBI
Pgam2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554567,909,891 - 7,912,116 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554567,909,891 - 7,912,116 (+)NCBIChiLan1.0ChiLan1.0
PGAM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2648,973,896 - 48,983,253 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1797,297,291 - 97,301,591 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0744,776,722 - 44,780,248 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1744,843,067 - 44,846,274 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl744,843,067 - 44,845,984 (-)Ensemblpanpan1.1panPan2
PGAM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha162,007,972 - 2,010,428 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01614,851,571 - 14,854,027 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1614,851,574 - 14,854,031 (+)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.01614,482,753 - 14,485,209 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01614,463,237 - 14,465,693 (+)NCBIUU_Cfam_GSD_1.0
Pgam2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511899,810,197 - 99,812,642 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647819,020,048 - 19,024,394 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647819,021,928 - 19,026,110 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PGAM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12114,604,127 - 14,609,196 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2114,606,401 - 14,609,158 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660627,905,467 - 7,908,316 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pgam2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247407,947,742 - 7,950,956 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247407,947,738 - 7,949,900 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PGAM2
1274 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2
Low 4 2 3 5 19 2 1
Below cutoff 6 4 2 2

Sequence


RefSeq Acc Id: ENSSSCT00000018201   ⟹   ENSSSCP00000017710
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1848,710,347 - 48,713,862 (+)Ensembl
RefSeq Acc Id: NM_001134968   ⟹   NP_001128440
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11848,710,492 - 48,712,749 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021078442   ⟹   XP_020934101
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11848,693,835 - 48,712,787 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021078443   ⟹   XP_020934102
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11848,693,832 - 48,712,787 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021078444   ⟹   XP_020934103
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11848,693,856 - 48,712,787 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021078445   ⟹   XP_020934104
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11848,693,856 - 48,712,787 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020934102   ⟸   XM_021078443
- Peptide Label: isoform X1
- UniProtKB: A0A8D0QR32 (UniProtKB/TrEMBL),   B5KJG2 (UniProtKB/TrEMBL),   A0A4X1U986 (UniProtKB/TrEMBL),   A0A8D1I1J2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020934101   ⟸   XM_021078442
- Peptide Label: isoform X1
- UniProtKB: A0A8D0QR32 (UniProtKB/TrEMBL),   B5KJG2 (UniProtKB/TrEMBL),   A0A4X1U986 (UniProtKB/TrEMBL),   A0A8D1I1J2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020934103   ⟸   XM_021078444
- Peptide Label: isoform X1
- UniProtKB: A0A8D0QR32 (UniProtKB/TrEMBL),   B5KJG2 (UniProtKB/TrEMBL),   A0A4X1U986 (UniProtKB/TrEMBL),   A0A8D1I1J2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020934104   ⟸   XM_021078445
- Peptide Label: isoform X1
- UniProtKB: A0A8D0QR32 (UniProtKB/TrEMBL),   B5KJG2 (UniProtKB/TrEMBL),   A0A4X1U986 (UniProtKB/TrEMBL),   A0A8D1I1J2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001128440   ⟸   NM_001134968
- UniProtKB: B5KJG2 (UniProtKB/TrEMBL),   A0A8D0QR32 (UniProtKB/TrEMBL),   A0A4X1U986 (UniProtKB/TrEMBL),   A0A8D1I1J2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000017710   ⟸   ENSSSCT00000018201


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016720 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015007814 UniProtKB/TrEMBL
  ENSSSCG00025008412 UniProtKB/TrEMBL
  ENSSSCG00030045736 UniProtKB/TrEMBL
  ENSSSCG00035068570 UniProtKB/TrEMBL
  ENSSSCG00040058786 UniProtKB/TrEMBL
  ENSSSCG00045022475 UniProtKB/TrEMBL
  ENSSSCG00050045195 UniProtKB/TrEMBL
  ENSSSCG00055005788 UniProtKB/TrEMBL
  ENSSSCG00060001204 UniProtKB/TrEMBL
  ENSSSCG00065073132 UniProtKB/TrEMBL
  ENSSSCG00070014943 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000018201 ENTREZGENE
  ENSSSCT00000018201.5 UniProtKB/TrEMBL
  ENSSSCT00015010370.1 UniProtKB/TrEMBL
  ENSSSCT00025011200.1 UniProtKB/TrEMBL
  ENSSSCT00030063880.1 UniProtKB/TrEMBL
  ENSSSCT00035092551.1 UniProtKB/TrEMBL
  ENSSSCT00040079830.1 UniProtKB/TrEMBL
  ENSSSCT00045038350.1 UniProtKB/TrEMBL
  ENSSSCT00050061521.1 UniProtKB/TrEMBL
  ENSSSCT00055011261.1 UniProtKB/TrEMBL
  ENSSSCT00060001469.1 UniProtKB/TrEMBL
  ENSSSCT00065100619.1 UniProtKB/TrEMBL
  ENSSSCT00070029332.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1240 UniProtKB/TrEMBL
InterPro His_Pase_superF_clade-1 UniProtKB/TrEMBL
  His_PPase_superfam UniProtKB/TrEMBL
  PG/BPGM_mutase_AS UniProtKB/TrEMBL
  Phosphogly_mut1 UniProtKB/TrEMBL
KEGG Report ssc:100188980 UniProtKB/TrEMBL
NCBI Gene PGAM2 ENTREZGENE
PANTHER PHOSPHOGLYCERATE MUTASE 2 UniProtKB/TrEMBL
  PTHR11931 UniProtKB/TrEMBL
Pfam His_Phos_1 UniProtKB/TrEMBL
PIRSF 6PFK_2-Ptase UniProtKB/TrEMBL
PROSITE PG_MUTASE UniProtKB/TrEMBL
SMART PGAM UniProtKB/TrEMBL
Superfamily-SCOP SSF53254 UniProtKB/TrEMBL
UniProt A0A4X1U986 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0QR32 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1I1J2 ENTREZGENE, UniProtKB/TrEMBL
  B5KJG2 ENTREZGENE, UniProtKB/TrEMBL
  B5KJG3_PIG UniProtKB/TrEMBL
  Q70PG2_PIG UniProtKB/TrEMBL
VGNC ID VGNC:91341 ENTREZGENE