LMO3 (LIM domain only 3) - Rat Genome Database

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Gene: LMO3 (LIM domain only 3) Sus scrofa
Analyze
Symbol: LMO3
Name: LIM domain only 3
RGD ID: 13906939
Description: ENCODES a protein that exhibits metal ion binding (inferred); INVOLVED IN positive regulation of transcription by RNA polymerase II; exploration behavior (ortholog); negative regulation of ERK1 and ERK2 cascade (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LIM domain only protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1556,056,885 - 56,118,813 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2559,453,257 - 59,512,969 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleus  (IBA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
LMO3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1556,056,885 - 56,118,813 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2559,453,257 - 59,512,969 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LMO3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381216,548,372 - 16,610,174 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1216,548,372 - 16,610,594 (-)EnsemblGRCh38hg38GRCh38
GRCh371216,701,306 - 16,761,148 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361216,592,574 - 16,652,291 (-)NCBINCBI36Build 36hg18NCBI36
Build 341216,592,573 - 16,650,698NCBI
Celera1221,845,084 - 21,904,807 (-)NCBICelera
Cytogenetic Map12p12.3NCBI
HuRef1216,469,772 - 16,529,598 (-)NCBIHuRef
CHM1_11216,666,323 - 16,726,164 (-)NCBICHM1_1
T2T-CHM13v2.01216,425,771 - 16,487,621 (-)NCBIT2T-CHM13v2.0
Lmo3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396138,339,916 - 138,559,204 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6138,339,916 - 138,558,966 (-)EnsemblGRCm39 Ensembl
GRCm386138,362,918 - 138,582,206 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6138,362,918 - 138,581,968 (-)EnsemblGRCm38mm10GRCm38
MGSCv376138,313,002 - 138,530,489 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366138,328,677 - 138,546,164 (-)NCBIMGSCv36mm8
Celera6141,430,681 - 141,644,348 (-)NCBICelera
Cytogenetic Map6G1NCBI
cM Map669.02NCBI
Lmo3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84172,965,944 - 173,028,980 (-)NCBIGRCr8
mRatBN7.24171,234,686 - 171,297,677 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4171,234,696 - 171,292,222 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4177,529,732 - 177,588,943 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04173,313,901 - 173,373,109 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04171,934,427 - 171,993,645 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04172,942,023 - 173,005,630 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4172,942,020 - 173,005,634 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04237,193,254 - 237,256,248 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44175,454,813 - 175,514,615 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4159,806,475 - 159,863,495 (-)NCBICelera
Cytogenetic Map4q44NCBI
Lmo3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541313,181,048 - 13,246,246 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541313,183,294 - 13,238,875 (-)NCBIChiLan1.0ChiLan1.0
LMO3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21021,990,278 - 22,051,148 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11221,987,039 - 22,048,472 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01216,544,474 - 16,605,925 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11216,940,325 - 17,001,622 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1216,902,025 - 16,997,809 (-)Ensemblpanpan1.1panPan2
LMO3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12730,150,311 - 30,208,286 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2730,152,053 - 30,206,924 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2716,239,149 - 16,295,078 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02730,478,768 - 30,534,669 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2730,478,462 - 30,533,199 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12730,329,210 - 30,385,083 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02730,318,468 - 30,374,400 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02715,960,154 - 16,016,308 (-)NCBIUU_Cfam_GSD_1.0
Lmo3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494591,303,815 - 91,359,977 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365871,035,680 - 1,089,804 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365871,035,007 - 1,089,798 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LMO3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11116,454,240 - 16,516,403 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606918,776,821 - 18,839,162 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lmo3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475221,484,949 - 21,543,169 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475221,482,234 - 21,542,602 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LMO3
909 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 2 23 3 5 8 8 23 1 6 1

Sequence


RefSeq Acc Id: NM_001112685   ⟹   NP_001106155
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1556,061,999 - 56,116,349 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005664042   ⟹   XP_005664099
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1556,061,025 - 56,118,811 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005664043   ⟹   XP_005664100
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1556,061,028 - 56,117,489 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005664046   ⟹   XP_005664103
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1556,056,885 - 56,117,489 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021090863   ⟹   XP_020946522
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1556,058,901 - 56,117,489 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021090864   ⟹   XP_020946523
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1556,058,920 - 56,118,813 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021090865   ⟹   XP_020946524
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1556,059,838 - 56,118,813 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021090866   ⟹   XP_020946525
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1556,056,888 - 56,118,813 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021090867   ⟹   XP_020946526
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1556,059,838 - 56,117,489 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001106155 (Get FASTA)   NCBI Sequence Viewer  
  NP_001421983 (Get FASTA)   NCBI Sequence Viewer  
  XP_005664099 (Get FASTA)   NCBI Sequence Viewer  
  XP_005664100 (Get FASTA)   NCBI Sequence Viewer  
  XP_005664103 (Get FASTA)   NCBI Sequence Viewer  
  XP_020946522 (Get FASTA)   NCBI Sequence Viewer  
  XP_020946523 (Get FASTA)   NCBI Sequence Viewer  
  XP_020946524 (Get FASTA)   NCBI Sequence Viewer  
  XP_020946525 (Get FASTA)   NCBI Sequence Viewer  
  XP_020946526 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAF93843 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000034707.2
  ENSSSCP00000053820
  ENSSSCP00000053820.1
  ENSSSCP00000059001
  ENSSSCP00000059001.2
  ENSSSCP00015001260.1
  ENSSSCP00015001312.1
  ENSSSCP00015001327.1
  ENSSSCP00025009077.1
  ENSSSCP00025009090.1
  ENSSSCP00025009099.1
  ENSSSCP00025009120.1
  ENSSSCP00030038294.1
  ENSSSCP00030038365.1
  ENSSSCP00030038378.1
  ENSSSCP00035020621.1
  ENSSSCP00035020636.1
  ENSSSCP00035020638.1
  ENSSSCP00040039063.1
  ENSSSCP00040039097.1
  ENSSSCP00040039132.1
  ENSSSCP00040039171.1
  ENSSSCP00045024144.1
  ENSSSCP00045024186.1
  ENSSSCP00045024225.1
  ENSSSCP00045024269.1
  ENSSSCP00045024308.1
  ENSSSCP00045024341.1
  ENSSSCP00045024417.1
  ENSSSCP00045024472.1
  ENSSSCP00050018796.1
  ENSSSCP00050018801.1
  ENSSSCP00050018803.1
  ENSSSCP00055025680.1
  ENSSSCP00055025717.1
  ENSSSCP00055025751.1
  ENSSSCP00055025779.1
  ENSSSCP00055025843.1
  ENSSSCP00060028450.1
  ENSSSCP00060028482.1
  ENSSSCP00060028485.1
  ENSSSCP00065027252.1
  ENSSSCP00065027256.1
  ENSSSCP00065027259.1
  ENSSSCP00065027261.1
  ENSSSCP00065027271.1
  ENSSSCP00070038227.1
  ENSSSCP00070038232.1
  ENSSSCP00070038243.1
  ENSSSCP00070038246.1
  ENSSSCP00070038250.1
RefSeq Acc Id: XP_005664103   ⟸   XM_005664046
- Peptide Label: isoform X4
- UniProtKB: A9ED84 (UniProtKB/TrEMBL),   A0A4X1VBS0 (UniProtKB/TrEMBL),   F1SQY4 (UniProtKB/TrEMBL),   A0A8D1YY94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020946525   ⟸   XM_021090866
- Peptide Label: isoform X4
- UniProtKB: A0A4X1VBS0 (UniProtKB/TrEMBL),   F1SQY4 (UniProtKB/TrEMBL),   A9ED84 (UniProtKB/TrEMBL),   A0A8D1YY94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020946522   ⟸   XM_021090863
- Peptide Label: isoform X2
- UniProtKB: A0A8D1QT57 (UniProtKB/TrEMBL),   A0A8D1FRH9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020946523   ⟸   XM_021090864
- Peptide Label: isoform X4
- UniProtKB: A0A4X1VBS0 (UniProtKB/TrEMBL),   F1SQY4 (UniProtKB/TrEMBL),   A9ED84 (UniProtKB/TrEMBL),   A0A8D1YY94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020946524   ⟸   XM_021090865
- Peptide Label: isoform X4
- UniProtKB: A0A4X1VBS0 (UniProtKB/TrEMBL),   F1SQY4 (UniProtKB/TrEMBL),   A9ED84 (UniProtKB/TrEMBL),   A0A8D1YY94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020946526   ⟸   XM_021090867
- Peptide Label: isoform X4
- UniProtKB: A0A4X1VBS0 (UniProtKB/TrEMBL),   F1SQY4 (UniProtKB/TrEMBL),   A9ED84 (UniProtKB/TrEMBL),   A0A8D1YY94 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005664099   ⟸   XM_005664042
- Peptide Label: isoform X1
- UniProtKB: A0A287BRD0 (UniProtKB/TrEMBL),   A0A4X1VBS6 (UniProtKB/TrEMBL),   A0A8D1R1H4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005664100   ⟸   XM_005664043
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001106155   ⟸   NM_001112685
- Sequence:
Protein Domains
LIM zinc-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000036499 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015002906 UniProtKB/TrEMBL
  ENSSSCG00025016278 UniProtKB/TrEMBL
  ENSSSCG00030059639 UniProtKB/TrEMBL
  ENSSSCG00035038746 UniProtKB/TrEMBL
  ENSSSCG00040064985 UniProtKB/TrEMBL
  ENSSSCG00045020329 UniProtKB/TrEMBL
  ENSSSCG00050034110 UniProtKB/TrEMBL
  ENSSSCG00055016317 UniProtKB/TrEMBL
  ENSSSCG00060048899 UniProtKB/TrEMBL
  ENSSSCG00065045960 UniProtKB/TrEMBL
  ENSSSCG00070022796 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000040428 ENTREZGENE
  ENSSSCT00000040428.2 UniProtKB/TrEMBL
  ENSSSCT00000053286 ENTREZGENE
  ENSSSCT00000053286.3 UniProtKB/TrEMBL
  ENSSSCT00000053362.2 UniProtKB/TrEMBL
  ENSSSCT00015003684.1 UniProtKB/TrEMBL
  ENSSSCT00015003827.1 UniProtKB/TrEMBL
  ENSSSCT00015003857.1 UniProtKB/TrEMBL
  ENSSSCT00025021989.1 UniProtKB/TrEMBL
  ENSSSCT00025022017.1 UniProtKB/TrEMBL
  ENSSSCT00025022041.1 UniProtKB/TrEMBL
  ENSSSCT00025022079.1 UniProtKB/TrEMBL
  ENSSSCT00030083334.1 UniProtKB/TrEMBL
  ENSSSCT00030083528.1 UniProtKB/TrEMBL
  ENSSSCT00030083559.1 UniProtKB/TrEMBL
  ENSSSCT00035051438.1 UniProtKB/TrEMBL
  ENSSSCT00035051469.1 UniProtKB/TrEMBL
  ENSSSCT00035051477.1 UniProtKB/TrEMBL
  ENSSSCT00040088886.1 UniProtKB/TrEMBL
  ENSSSCT00040088952.1 UniProtKB/TrEMBL
  ENSSSCT00040089026.1 UniProtKB/TrEMBL
  ENSSSCT00040089120.1 UniProtKB/TrEMBL
  ENSSSCT00045034809.1 UniProtKB/TrEMBL
  ENSSSCT00045034865.1 UniProtKB/TrEMBL
  ENSSSCT00045034915.1 UniProtKB/TrEMBL
  ENSSSCT00045034980.1 UniProtKB/TrEMBL
  ENSSSCT00045035030.1 UniProtKB/TrEMBL
  ENSSSCT00045035070.1 UniProtKB/TrEMBL
  ENSSSCT00045035168.1 UniProtKB/TrEMBL
  ENSSSCT00045035251.1 UniProtKB/TrEMBL
  ENSSSCT00050045744.1 UniProtKB/TrEMBL
  ENSSSCT00050045763.1 UniProtKB/TrEMBL
  ENSSSCT00050045770.1 UniProtKB/TrEMBL
  ENSSSCT00055032250.1 UniProtKB/TrEMBL
  ENSSSCT00055032289.1 UniProtKB/TrEMBL
  ENSSSCT00055032327.1 UniProtKB/TrEMBL
  ENSSSCT00055032363.1 UniProtKB/TrEMBL
  ENSSSCT00055032437.1 UniProtKB/TrEMBL
  ENSSSCT00060066423.1 UniProtKB/TrEMBL
  ENSSSCT00060066515.1 UniProtKB/TrEMBL
  ENSSSCT00060066523.1 UniProtKB/TrEMBL
  ENSSSCT00065062906.1 UniProtKB/TrEMBL
  ENSSSCT00065062912.1 UniProtKB/TrEMBL
  ENSSSCT00065062917.1 UniProtKB/TrEMBL
  ENSSSCT00065062921.1 UniProtKB/TrEMBL
  ENSSSCT00065062939.1 UniProtKB/TrEMBL
  ENSSSCT00070045352.1 UniProtKB/TrEMBL
  ENSSSCT00070045358.1 UniProtKB/TrEMBL
  ENSSSCT00070045368.1 UniProtKB/TrEMBL
  ENSSSCT00070045371.1 UniProtKB/TrEMBL
  ENSSSCT00070045375.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine Rich Protein UniProtKB/TrEMBL
InterPro LMO_RBTN_TF UniProtKB/TrEMBL
  Znf_LIM UniProtKB/TrEMBL
KEGG Report ssc:100127154 UniProtKB/TrEMBL
NCBI Gene LMO3 ENTREZGENE
PANTHER LD11652P UniProtKB/TrEMBL
  LIM DOMAIN ONLY PROTEIN 3 UniProtKB/TrEMBL
Pfam LIM UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
SMART LIM UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
UniProt A0A287BRD0 ENTREZGENE
  A0A4X1VBS0 ENTREZGENE
  A0A4X1VBS6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IN54_PIG UniProtKB/TrEMBL
  A0A8D0MC09_PIG UniProtKB/TrEMBL
  A0A8D0R0H4_PIG UniProtKB/TrEMBL
  A0A8D0XMR7_PIG UniProtKB/TrEMBL
  A0A8D1FRH9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1QT57 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1R1H4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1YY82_PIG UniProtKB/TrEMBL
  A0A8D1YY94 ENTREZGENE, UniProtKB/TrEMBL
  A9ED84 ENTREZGENE, UniProtKB/TrEMBL
  F1SQY4 ENTREZGENE
UniProt Secondary A0A286ZSU6 UniProtKB/TrEMBL
  A0A287BRD0 UniProtKB/TrEMBL
  A0A4X1VBS0 UniProtKB/TrEMBL
  F1SQY4 UniProtKB/TrEMBL
VGNC ID VGNC:89766 ENTREZGENE