DCTD (dCMP deaminase) - Rat Genome Database

Name: DCTD
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: DCTD (dCMP deaminase) Sus scrofa

Analyze

Symbol:

DCTD

Name:

dCMP deaminase

RGD ID:

13906489

Description:

ENCODES a protein that exhibits dCMP deaminase activity (inferred); deoxyribonucleoside 5'-monophosphate N-glycosidase activity (inferred); hydrolase activity (inferred); INVOLVED IN nucleoside salvage (inferred); pyrimidine nucleotide metabolic process (inferred); PARTICIPATES IN beta-ureidopropionase deficiency pathway; dihydropyrimidinase deficiency pathway; gemcitabine pharmacodynamics pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

deoxycytidylate deaminase

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DCTD (dCMP deaminase)	HGNC	EggNOG, Ensembl, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Dctd (dCMP deaminase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Dctd (dCMP deaminase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Dctd (dCMP deaminase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DCTD (dCMP deaminase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DCTD (dCMP deaminase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Dctd (dCMP deaminase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DCTD (dCMP deaminase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Dctd (dCMP deaminase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	44,466,315 - 44,490,831 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	44,466,312 - 44,492,594 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	51,059,863 - 51,085,986 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cytidine deamination (IBA)

nucleoside salvage (IEA)

pyrimidine nucleotide metabolic process (IEA)

Cellular Component

cytoplasm (IBA,IEA)

Molecular Function

dCMP deaminase activity (IBA,IEA)

deoxyribonucleoside 5'-monophosphate N-glycosidase activity (IEA)

hydrolase activity (IEA)

identical protein binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

beta-ureidopropionase deficiency pathway (ISO)

dihydropyrimidinase deficiency pathway (ISO)

gemcitabine pharmacodynamics pathway (ISO)

gemcitabine pharmacokinetics pathway (ISO)

mitochondrial neurogastrointestinal encephalopathy syndrome pathway (ISO)

orotic aciduria 1 pathway (ISO)

pyrimidine metabolic pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

DCTD
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	44,466,315 - 44,490,831 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	44,466,312 - 44,492,594 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	51,059,863 - 51,085,986 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DCTD
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	182,890,091 - 182,917,611 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	182,890,060 - 182,917,936 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	183,811,244 - 183,838,764 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	184,048,238 - 184,075,624 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	184,186,406 - 184,211,870	NCBI
Celera	4	181,145,398 - 181,172,940 (-)	NCBI		Celera
Cytogenetic Map	4	q35.1	NCBI
HuRef	4	179,572,300 - 179,599,627 (-)	NCBI		HuRef
CHM1_1	4	183,785,829 - 183,815,055 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	186,233,649 - 186,261,170 (-)	NCBI		T2T-CHM13v2.0

Dctd
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	48,552,127 - 48,594,702 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	48,552,127 - 48,606,268 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	48,099,092 - 48,141,667 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	48,099,092 - 48,153,233 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	49,184,446 - 49,227,021 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	49,608,814 - 49,640,477 (+)	NCBI		MGSCv36	mm8
Celera	8	50,777,931 - 50,820,444 (+)	NCBI		Celera
Cytogenetic Map	8	B1.1- B1.2	NCBI
cM Map	8	26.98	NCBI

Dctd
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	50,799,699 - 50,831,398 (-)	NCBI		GRCr8
mRatBN7.2	16	44,066,952 - 44,098,654 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	44,055,128 - 44,098,446 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	49,476,334 - 49,507,945 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	52,836,910 - 52,868,522 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	48,119,292 - 48,151,056 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	47,177,144 - 47,222,850 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	47,177,145 - 47,208,110 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	46,903,566 - 46,948,682 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	47,240,976 - 47,261,942 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	47,241,054 - 47,261,972 (-)	NCBI
Celera	16	42,085,553 - 42,116,478 (-)	NCBI		Celera
Cytogenetic Map	16	q11	NCBI

Dctd
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	25,825,672 - 25,850,862 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	25,825,366 - 25,849,511 (+)	NCBI	ChiLan1.0	ChiLan1.0

DCTD
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	180,635,393 - 180,666,559 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	180,996,131 - 181,023,642 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	175,079,416 - 175,106,756 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	187,303,588 - 187,330,527 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	187,303,591 - 187,330,527 (-)	Ensembl	panpan1.1		panPan2

DCTD
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	47,350,493 - 47,376,184 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	47,350,357 - 47,375,127 (+)	NCBI	CanFam3.1		canFam3	CanFam3.1
CanFam3.1 Ensembl	16	47,350,357 - 47,375,127 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	36,552,121 - 36,579,325 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	49,576,252 - 49,603,441 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	49,576,300 - 49,617,975 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	47,539,487 - 47,566,654 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	48,152,348 - 48,179,540 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	48,292,717 - 48,319,923 (+)	NCBI		UU_Cfam_GSD_1.0

Dctd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	31,929,216 - 32,043,653 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936554	6,088,538 - 6,118,976 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936554	6,088,544 - 6,110,274 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DCTD
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	128,874,164 - 128,902,036 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	128,874,117 - 128,901,910 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	109,082,563 - 109,110,617 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dctd
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624769	13,649,016 - 13,674,590 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624769	13,649,603 - 13,674,578 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in DCTD
1025 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium			3	1		4		2
Low	10	4		4	2	19	2	1	3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_001925083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005671678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005671679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005671680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013984018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021075124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021075125	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002339072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002339073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK397914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU466426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01014138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000017176 ⟹ ENSSSCP00000016715

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	15	44,466,315 - 44,492,406 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000063276 ⟹ ENSSSCP00000041989

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	15	44,466,315 - 44,490,831 (-)	Ensembl

RefSeq Acc Id:

XM_001925083 ⟹ XP_001925118

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	15	44,466,312 - 44,492,401 (-)	NCBI

Sequence:

show sequence

GGGACGGCGGCGGCGGCGGCGGGGACGAGCGCCGGCCTGCAGGTCGCGGACCCTGACCGGAGGG
AGGGCGGGGGCAGCGGTACGGGTCCACGTGGCGCGGCTGGGGCGCAGGGAGTCCTGGGGACGCA
CCATCCCGGTTGGAGCCTCCGCTGGGCAAACACGCGCGGGGCCGCGGTATTCGACTCAGCATGA
GCAAAGTGCCCTGCAAAAAACGTGATGACTATTTGGAGTGGCCTGAGTATTTCATGGCAGTGGC
CTTCCTGTCAGCACAGAGGAGCAAAGATCCAAATTCCCAGGTCGGAGCCTGCATCGTGAATGCA
GAAAATAAGATTGTGGGCATCGGGTACAATGGAATGCCCAATGGGTGCAGTGATGACCTCTTGC
CTTGGAGGAGGACAGCAGAGAACATCCTGGACACCAAATACCCTTACGTGTGCCACGCCGAGCT
GAATGCCATCATGAACAAAAACTCGGCGGACGTGAAAGGCTGTACCATGTATGTCGCCTTGTTC
CCGTGTAATGAATGTGCTAAGCTCATCATCCAGGCAGGGATAAAAGAAGTTATTTTCATGTCTG
ATAAATACCACGATAGCAATGAGACAACAGCGGCGAGGCTCATGTTTGAAATGGCCGGGGTTTC
CTTCAGGAAATTCACACCAAAGTGCAGCCAGATTGTCATTGACTTTGATTCAATTAACAGCAGA
GCGAGTGAGACACTCCAGTGAGTGACACGTCATTGCATCTCCAGATCGGGATTATCCTCTTCTA
AGAAGCTCTAATGCCTTTCATCTGGAAGTTATACAGAACTTTTTAATAGCCAGGGCAGCACACG
TCCACATCTGAAGAACATAAGACCTCCAATCTTCCCGACTCTCTCCCGTCACCTAGAATCAGCA
TCTGTTGAAATTACTGATCGAGGGTTTCAAAGAAAGGAGCTGTGGATGACCTGTCTCGAAGGTT
TGGAGCGGGCGCCTTCCCTCCTGTCCCCTGGTTTGCTGGGATACTTGTGGCTCTGCAGAAGGGC
GTCAGCTGTGTGTCGTGCACTGCGTTTCACAGCTGCTCTTCAACACTCCCTGTGCTGGAAGGAC
TGATGAATCATTGCAGTTGTGTTCCTAGCTGGATGAGCAGACACCCCAGTCCAAACATCTGGCT
CAAGTGAAGCATAACGTGTGATGCCTTTGGGAGAAAAAAGGGATCCATAAGGCATTAGCATTTA
AGCATTTGCTTTAGGGAGTTGAGGGAACCAACACCCAACCACCTGAAACACCTGGATGGGGGGG
GCCACATCTGTCCCGACAGACAATGAGCATAACTGAGCCTGCGATTCTTTCTCCACTTCTGTTG
ACCTGCTACCCACAGGGTAGTGGCACGGTATCCCTCTGGGTCTGGAGACCTCCATTGTTTTATT
TTTTGGCTGCCCCTGTGGCATGCGGAAGTTTTTGGGCCAGAGATTGAATCCATGCCACAGCAGT
GACCTGAGCCCCCAGCAGTGACAACACCGGACTGCTGACTCACTGAGCCACCAGGGAACTCCCA
GACCCCTGTTCTTCTCATCTTTGGTTTGTTGGTGGCACAGACCTGTTACATTAGTTTTTCTGGA
TAATGAGTAGTTCCCAGAGGAGGCAGCCTGTCTCCTGGTGTCACCCCAGGACCATGTCCTTCCA
TGGAGCGGGTGGTATGGGTAGGGGCTGAGCACGCACCTGCTGTTCCACTGACCAGTAGTGCAGT
AGTGTTCATTTTCAAGGCTGCTCTAGCCTATCCTAAAGTGAAACGGGAGAGAGCTCAACCCATC
TCCAGGCGTTTCTTCCAGATCTGTGTGTGATGGGAGCTTGCTTGTCCTCCTGGCCCCCTGCCGT
CCTCAACACAAATCTCACCCTCCTAATCACTGCAATTTGGGGAATGGGTAGCCGGGCACCTTGT
CTTTAATCTCATTTAGTTTTTATTAGACGTGCTCAGTACTTTTGTTGAGAAAATGGTTTCTTTA
TCCTAAAGATTATGACTGTTTAAAGTGCTCTTACATTTTTATGAGTTTTTATTTTGTCTCTGAG
GTTTTGTACTCCATGTTCTGGGGTATTCGTAATTTGGCTCCTGACCACAGTTATTAAAATCTTA
TTAAAATCCA

hide sequence

RefSeq Acc Id:

XM_005671678 ⟹ XP_005671735

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	15	44,466,312 - 44,492,438 (-)	NCBI

Sequence:

show sequence

CCGCCTCCTCTGCCGACTTCCTCCCCGGGCGCGCGGCGGGACGGCGGCGGCGGCGGCGGGGACG
AGCGCCGGCCTGCAGACTCAGCATGAGCAAAGTGCCCTGCAAAAAACGTGATGACTATTTGGAG
TGGCCTGAGTATTTCATGGCAGTGGCCTTCCTGTCAGCACAGAGGAGCAAAGATCCAAATTCCC
AGGTCGGAGCCTGCATCGTGAATGCAGAAAATAAGATTGTGGGCATCGGGTACAATGGAATGCC
CAATGGGTGCAGTGATGACCTCTTGCCTTGGAGGAGGACAGCAGAGAACATCCTGGACACCAAA
TACCCTTACGTGTGCCACGCCGAGCTGAATGCCATCATGAACAAAAACTCGGCGGACGTGAAAG
GCTGTACCATGTATGTCGCCTTGTTCCCGTGTAATGAATGTGCTAAGCTCATCATCCAGGCAGG
GATAAAAGAAGTTATTTTCATGTCTGATAAATACCACGATAGCAATGAGACAACAGCGGCGAGG
CTCATGTTTGAAATGGCCGGGGTTTCCTTCAGGAAATTCACACCAAAGTGCAGCCAGATTGTCA
TTGACTTTGATTCAATTAACAGCAGAGCGAGTGAGACACTCCAGTGAGTGACACGTCATTGCAT
CTCCAGATCGGGATTATCCTCTTCTAAGAAGCTCTAATGCCTTTCATCTGGAAGTTATACAGAA
CTTTTTAATAGCCAGGGCAGCACACGTCCACATCTGAAGAACATAAGACCTCCAATCTTCCCGA
CTCTCTCCCGTCACCTAGAATCAGCATCTGTTGAAATTACTGATCGAGGGTTTCAAAGAAAGGA
GCTGTGGATGACCTGTCTCGAAGGTTTGGAGCGGGCGCCTTCCCTCCTGTCCCCTGGTTTGCTG
GGATACTTGTGGCTCTGCAGAAGGGCGTCAGCTGTGTGTCGTGCACTGCGTTTCACAGCTGCTC
TTCAACACTCCCTGTGCTGGAAGGACTGATGAATCATTGCAGTTGTGTTCCTAGCTGGATGAGC
AGACACCCCAGTCCAAACATCTGGCTCAAGTGAAGCATAACGTGTGATGCCTTTGGGAGAAAAA
AGGGATCCATAAGGCATTAGCATTTAAGCATTTGCTTTAGGGAGTTGAGGGAACCAACACCCAA
CCACCTGAAACACCTGGATGGGGGGGGCCACATCTGTCCCGACAGACAATGAGCATAACTGAGC
CTGCGATTCTTTCTCCACTTCTGTTGACCTGCTACCCACAGGGTAGTGGCACGGTATCCCTCTG
GGTCTGGAGACCTCCATTGTTTTATTTTTTGGCTGCCCCTGTGGCATGCGGAAGTTTTTGGGCC
AGAGATTGAATCCATGCCACAGCAGTGACCTGAGCCCCCAGCAGTGACAACACCGGACTGCTGA
CTCACTGAGCCACCAGGGAACTCCCAGACCCCTGTTCTTCTCATCTTTGGTTTGTTGGTGGCAC
AGACCTGTTACATTAGTTTTTCTGGATAATGAGTAGTTCCCAGAGGAGGCAGCCTGTCTCCTGG
TGTCACCCCAGGACCATGTCCTTCCATGGAGCGGGTGGTATGGGTAGGGGCTGAGCACGCACCT
GCTGTTCCACTGACCAGTAGTGCAGTAGTGTTCATTTTCAAGGCTGCTCTAGCCTATCCTAAAG
TGAAACGGGAGAGAGCTCAACCCATCTCCAGGCGTTTCTTCCAGATCTGTGTGTGATGGGAGCT
TGCTTGTCCTCCTGGCCCCCTGCCGTCCTCAACACAAATCTCACCCTCCTAATCACTGCAATTT
GGGGAATGGGTAGCCGGGCACCTTGTCTTTAATCTCATTTAGTTTTTATTAGACGTGCTCAGTA
CTTTTGTTGAGAAAATGGTTTCTTTATCCTAAAGATTATGACTGTTTAAAGTGCTCTTACATTT
TTATGAGTTTTTATTTTGTCTCTGAGGTTTTGTACTCCATGTTCTGGGGTATTCGTAATTTGGC
TCCTGACCACAGTTATTAAAATCTTATTAAAATCCA

hide sequence

RefSeq Acc Id:

XM_005671679 ⟹ XP_005671736

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	15	44,466,312 - 44,492,353 (-)	NCBI

Sequence:

show sequence

GACCCTGACCGGAGGGAGGGCGGGGGCAGCGGTACGGGTCCACGTGGCGCGGCTGGGGCGCAGG
GAGTCCTGGGGACGCACCATCCCGGTTGGAGCCTCCGCTGGGCAAACACGCGCGGGGCCGCGGT
ATTCGGTCAGTTCAAGCCTCCAGGACGCTTTCTCTTTCGCGGGAGCCGAGAGCGCCCGGTGGTT
CCGGGGGGACCTGAAAAGAGCAGTCATGTACTCAGCATGAGCAAAGTGCCCTGCAAAAAACGTG
ATGACTATTTGGAGTGGCCTGAGTATTTCATGGCAGTGGCCTTCCTGTCAGCACAGAGGAGCAA
AGATCCAAATTCCCAGGTCGGAGCCTGCATCGTGAATGCAGAAAATAAGATTGTGGGCATCGGG
TACAATGGAATGCCCAATGGGTGCAGTGATGACCTCTTGCCTTGGAGGAGGACAGCAGAGAACA
TCCTGGACACCAAATACCCTTACGTGTGCCACGCCGAGCTGAATGCCATCATGAACAAAAACTC
GGCGGACGTGAAAGGCTGTACCATGTATGTCGCCTTGTTCCCGTGTAATGAATGTGCTAAGCTC
ATCATCCAGGCAGGGATAAAAGAAGTTATTTTCATGTCTGATAAATACCACGATAGCAATGAGA
CAACAGCGGCGAGGCTCATGTTTGAAATGGCCGGGGTTTCCTTCAGGAAATTCACACCAAAGTG
CAGCCAGATTGTCATTGACTTTGATTCAATTAACAGCAGAGCGAGTGAGACACTCCAGTGAGTG
ACACGTCATTGCATCTCCAGATCGGGATTATCCTCTTCTAAGAAGCTCTAATGCCTTTCATCTG
GAAGTTATACAGAACTTTTTAATAGCCAGGGCAGCACACGTCCACATCTGAAGAACATAAGACC
TCCAATCTTCCCGACTCTCTCCCGTCACCTAGAATCAGCATCTGTTGAAATTACTGATCGAGGG
TTTCAAAGAAAGGAGCTGTGGATGACCTGTCTCGAAGGTTTGGAGCGGGCGCCTTCCCTCCTGT
CCCCTGGTTTGCTGGGATACTTGTGGCTCTGCAGAAGGGCGTCAGCTGTGTGTCGTGCACTGCG
TTTCACAGCTGCTCTTCAACACTCCCTGTGCTGGAAGGACTGATGAATCATTGCAGTTGTGTTC
CTAGCTGGATGAGCAGACACCCCAGTCCAAACATCTGGCTCAAGTGAAGCATAACGTGTGATGC
CTTTGGGAGAAAAAAGGGATCCATAAGGCATTAGCATTTAAGCATTTGCTTTAGGGAGTTGAGG
GAACCAACACCCAACCACCTGAAACACCTGGATGGGGGGGGCCACATCTGTCCCGACAGACAAT
GAGCATAACTGAGCCTGCGATTCTTTCTCCACTTCTGTTGACCTGCTACCCACAGGGTAGTGGC
ACGGTATCCCTCTGGGTCTGGAGACCTCCATTGTTTTATTTTTTGGCTGCCCCTGTGGCATGCG
GAAGTTTTTGGGCCAGAGATTGAATCCATGCCACAGCAGTGACCTGAGCCCCCAGCAGTGACAA
CACCGGACTGCTGACTCACTGAGCCACCAGGGAACTCCCAGACCCCTGTTCTTCTCATCTTTGG
TTTGTTGGTGGCACAGACCTGTTACATTAGTTTTTCTGGATAATGAGTAGTTCCCAGAGGAGGC
AGCCTGTCTCCTGGTGTCACCCCAGGACCATGTCCTTCCATGGAGCGGGTGGTATGGGTAGGGG
CTGAGCACGCACCTGCTGTTCCACTGACCAGTAGTGCAGTAGTGTTCATTTTCAAGGCTGCTCT
AGCCTATCCTAAAGTGAAACGGGAGAGAGCTCAACCCATCTCCAGGCGTTTCTTCCAGATCTGT
GTGTGATGGGAGCTTGCTTGTCCTCCTGGCCCCCTGCCGTCCTCAACACAAATCTCACCCTCCT
AATCACTGCAATTTGGGGAATGGGTAGCCGGGCACCTTGTCTTTAATCTCATTTAGTTTTTATT
AGACGTGCTCAGTACTTTTGTTGAGAAAATGGTTTCTTTATCCTAAAGATTATGACTGTTTAAA
GTGCTCTTACATTTTTATGAGTTTTTATTTTGTCTCTGAGGTTTTGTACTCCATGTTCTGGGGT
ATTCGTAATTTGGCTCCTGACCACAGTTATTAAAATCTTATTAAAATCCA

hide sequence

RefSeq Acc Id:

XM_005671680 ⟹ XP_005671737

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	15	44,466,312 - 44,492,411 (-)	NCBI

Sequence:

show sequence

GGCGCGCGGCGGGACGGCGGCGGCGGCGGCGGGGACGAGCGCCGGCCTGCAGGTCGCGGACCCT
GACCGGAGGGAGGGCGGGGGCAGCGACTCAGCATGAGCAAAGTGCCCTGCAAAAAACGTGATGA
CTATTTGGAGTGGCCTGAGTATTTCATGGCAGTGGCCTTCCTGTCAGCACAGAGGAGCAAAGAT
CCAAATTCCCAGGTCGGAGCCTGCATCGTGAATGCAGAAAATAAGATTGTGGGCATCGGGTACA
ATGGAATGCCCAATGGGTGCAGTGATGACCTCTTGCCTTGGAGGAGGACAGCAGAGAACATCCT
GGACACCAAATACCCTTACGTGTGCCACGCCGAGCTGAATGCCATCATGAACAAAAACTCGGCG
GACGTGAAAGGCTGTACCATGTATGTCGCCTTGTTCCCGTGTAATGAATGTGCTAAGCTCATCA
TCCAGGCAGGGATAAAAGAAGTTATTTTCATGTCTGATAAATACCACGATAGCAATGAGACAAC
AGCGGCGAGGCTCATGTTTGAAATGGCCGGGGTTTCCTTCAGGAAATTCACACCAAAGTGCAGC
CAGATTGTCATTGACTTTGATTCAATTAACAGCAGAGCGAGTGAGACACTCCAGTGAGTGACAC
GTCATTGCATCTCCAGATCGGGATTATCCTCTTCTAAGAAGCTCTAATGCCTTTCATCTGGAAG
TTATACAGAACTTTTTAATAGCCAGGGCAGCACACGTCCACATCTGAAGAACATAAGACCTCCA
ATCTTCCCGACTCTCTCCCGTCACCTAGAATCAGCATCTGTTGAAATTACTGATCGAGGGTTTC
AAAGAAAGGAGCTGTGGATGACCTGTCTCGAAGGTTTGGAGCGGGCGCCTTCCCTCCTGTCCCC
TGGTTTGCTGGGATACTTGTGGCTCTGCAGAAGGGCGTCAGCTGTGTGTCGTGCACTGCGTTTC
ACAGCTGCTCTTCAACACTCCCTGTGCTGGAAGGACTGATGAATCATTGCAGTTGTGTTCCTAG
CTGGATGAGCAGACACCCCAGTCCAAACATCTGGCTCAAGTGAAGCATAACGTGTGATGCCTTT
GGGAGAAAAAAGGGATCCATAAGGCATTAGCATTTAAGCATTTGCTTTAGGGAGTTGAGGGAAC
CAACACCCAACCACCTGAAACACCTGGATGGGGGGGGCCACATCTGTCCCGACAGACAATGAGC
ATAACTGAGCCTGCGATTCTTTCTCCACTTCTGTTGACCTGCTACCCACAGGGTAGTGGCACGG
TATCCCTCTGGGTCTGGAGACCTCCATTGTTTTATTTTTTGGCTGCCCCTGTGGCATGCGGAAG
TTTTTGGGCCAGAGATTGAATCCATGCCACAGCAGTGACCTGAGCCCCCAGCAGTGACAACACC
GGACTGCTGACTCACTGAGCCACCAGGGAACTCCCAGACCCCTGTTCTTCTCATCTTTGGTTTG
TTGGTGGCACAGACCTGTTACATTAGTTTTTCTGGATAATGAGTAGTTCCCAGAGGAGGCAGCC
TGTCTCCTGGTGTCACCCCAGGACCATGTCCTTCCATGGAGCGGGTGGTATGGGTAGGGGCTGA
GCACGCACCTGCTGTTCCACTGACCAGTAGTGCAGTAGTGTTCATTTTCAAGGCTGCTCTAGCC
TATCCTAAAGTGAAACGGGAGAGAGCTCAACCCATCTCCAGGCGTTTCTTCCAGATCTGTGTGT
GATGGGAGCTTGCTTGTCCTCCTGGCCCCCTGCCGTCCTCAACACAAATCTCACCCTCCTAATC
ACTGCAATTTGGGGAATGGGTAGCCGGGCACCTTGTCTTTAATCTCATTTAGTTTTTATTAGAC
GTGCTCAGTACTTTTGTTGAGAAAATGGTTTCTTTATCCTAAAGATTATGACTGTTTAAAGTGC
TCTTACATTTTTATGAGTTTTTATTTTGTCTCTGAGGTTTTGTACTCCATGTTCTGGGGTATTC
GTAATTTGGCTCCTGACCACAGTTATTAAAATCTTATTAAAATCCA

hide sequence

RefSeq Acc Id:

XM_013984018 ⟹ XP_013839472

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	15	44,466,312 - 44,492,353 (-)	NCBI

Sequence:

show sequence

GACCCTGACCGGAGGGAGGGCGGGGGCAGCGGTACGGGTCCACGTGGCGCGGCTGGGGCGCAGG
GAGTCCTGGGGACGCACCATCCCGGTTGGAGCCTCCGCTGGGCAAACACGCGCGGGGCCGCGGT
ATTCGGTCAGTTCAAGCCTCCAGGACGCTTTCTCTTTCGCGGGAGCCGAGAGCGCCCGGTGGTT
CCGGGGGGACCTGAAAAGAGCAGTCATGTGTGCGTTGGGGACTCAGCATGAGCAAAGTGCCCTG
CAAAAAACGTGATGACTATTTGGAGTGGCCTGAGTATTTCATGGCAGTGGCCTTCCTGTCAGCA
CAGAGGAGCAAAGATCCAAATTCCCAGGTCGGAGCCTGCATCGTGAATGCAGAAAATAAGATTG
TGGGCATCGGGTACAATGGAATGCCCAATGGGTGCAGTGATGACCTCTTGCCTTGGAGGAGGAC
AGCAGAGAACATCCTGGACACCAAATACCCTTACGTGTGCCACGCCGAGCTGAATGCCATCATG
AACAAAAACTCGGCGGACGTGAAAGGCTGTACCATGTATGTCGCCTTGTTCCCGTGTAATGAAT
GTGCTAAGCTCATCATCCAGGCAGGGATAAAAGAAGTTATTTTCATGTCTGATAAATACCACGA
TAGCAATGAGACAACAGCGGCGAGGCTCATGTTTGAAATGGCCGGGGTTTCCTTCAGGAAATTC
ACACCAAAGTGCAGCCAGATTGTCATTGACTTTGATTCAATTAACAGCAGAGCGAGTGAGACAC
TCCAGTGAGTGACACGTCATTGCATCTCCAGATCGGGATTATCCTCTTCTAAGAAGCTCTAATG
CCTTTCATCTGGAAGTTATACAGAACTTTTTAATAGCCAGGGCAGCACACGTCCACATCTGAAG
AACATAAGACCTCCAATCTTCCCGACTCTCTCCCGTCACCTAGAATCAGCATCTGTTGAAATTA
CTGATCGAGGGTTTCAAAGAAAGGAGCTGTGGATGACCTGTCTCGAAGGTTTGGAGCGGGCGCC
TTCCCTCCTGTCCCCTGGTTTGCTGGGATACTTGTGGCTCTGCAGAAGGGCGTCAGCTGTGTGT
CGTGCACTGCGTTTCACAGCTGCTCTTCAACACTCCCTGTGCTGGAAGGACTGATGAATCATTG
CAGTTGTGTTCCTAGCTGGATGAGCAGACACCCCAGTCCAAACATCTGGCTCAAGTGAAGCATA
ACGTGTGATGCCTTTGGGAGAAAAAAGGGATCCATAAGGCATTAGCATTTAAGCATTTGCTTTA
GGGAGTTGAGGGAACCAACACCCAACCACCTGAAACACCTGGATGGGGGGGGCCACATCTGTCC
CGACAGACAATGAGCATAACTGAGCCTGCGATTCTTTCTCCACTTCTGTTGACCTGCTACCCAC
AGGGTAGTGGCACGGTATCCCTCTGGGTCTGGAGACCTCCATTGTTTTATTTTTTGGCTGCCCC
TGTGGCATGCGGAAGTTTTTGGGCCAGAGATTGAATCCATGCCACAGCAGTGACCTGAGCCCCC
AGCAGTGACAACACCGGACTGCTGACTCACTGAGCCACCAGGGAACTCCCAGACCCCTGTTCTT
CTCATCTTTGGTTTGTTGGTGGCACAGACCTGTTACATTAGTTTTTCTGGATAATGAGTAGTTC
CCAGAGGAGGCAGCCTGTCTCCTGGTGTCACCCCAGGACCATGTCCTTCCATGGAGCGGGTGGT
ATGGGTAGGGGCTGAGCACGCACCTGCTGTTCCACTGACCAGTAGTGCAGTAGTGTTCATTTTC
AAGGCTGCTCTAGCCTATCCTAAAGTGAAACGGGAGAGAGCTCAACCCATCTCCAGGCGTTTCT
TCCAGATCTGTGTGTGATGGGAGCTTGCTTGTCCTCCTGGCCCCCTGCCGTCCTCAACACAAAT
CTCACCCTCCTAATCACTGCAATTTGGGGAATGGGTAGCCGGGCACCTTGTCTTTAATCTCATT
TAGTTTTTATTAGACGTGCTCAGTACTTTTGTTGAGAAAATGGTTTCTTTATCCTAAAGATTAT
GACTGTTTAAAGTGCTCTTACATTTTTATGAGTTTTTATTTTGTCTCTGAGGTTTTGTACTCCA
TGTTCTGGGGTATTCGTAATTTGGCTCCTGACCACAGTTATTAAAATCTTATTAAAATCCA

hide sequence

RefSeq Acc Id:

XM_021075124 ⟹ XP_020930783

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	15	44,466,312 - 44,492,594 (-)	NCBI

Sequence:

show sequence

AAAGGGCGCCATCCGGACCTTTAGACTCAGCATGAGCAAAGTGCCCTGCAAAAAACGTGATGAC
TATTTGGAGTGGCCTGAGTATTTCATGGCAGTGGCCTTCCTGTCAGCACAGAGGAGCAAAGATC
CAAATTCCCAGGTCGGAGCCTGCATCGTGAATGCAGAAAATAAGATTGTGGGCATCGGGTACAA
TGGAATGCCCAATGGGTGCAGTGATGACCTCTTGCCTTGGAGGAGGACAGCAGAGAACATCCTG
GACACCAAATACCCTTACGTGTGCCACGCCGAGCTGAATGCCATCATGAACAAAAACTCGGCGG
ACGTGAAAGGCTGTACCATGTATGTCGCCTTGTTCCCGTGTAATGAATGTGCTAAGCTCATCAT
CCAGGCAGGGATAAAAGAAGTTATTTTCATGTCTGATAAATACCACGATAGCAATGAGACAACA
GCGGCGAGGCTCATGTTTGAAATGGCCGGGGTTTCCTTCAGGAAATTCACACCAAAGTGCAGCC
AGATTGTCATTGACTTTGATTCAATTAACAGCAGAGCGAGTGAGACACTCCAGTGAGTGACACG
TCATTGCATCTCCAGATCGGGATTATCCTCTTCTAAGAAGCTCTAATGCCTTTCATCTGGAAGT
TATACAGAACTTTTTAATAGCCAGGGCAGCACACGTCCACATCTGAAGAACATAAGACCTCCAA
TCTTCCCGACTCTCTCCCGTCACCTAGAATCAGCATCTGTTGAAATTACTGATCGAGGGTTTCA
AAGAAAGGAGCTGTGGATGACCTGTCTCGAAGGTTTGGAGCGGGCGCCTTCCCTCCTGTCCCCT
GGTTTGCTGGGATACTTGTGGCTCTGCAGAAGGGCGTCAGCTGTGTGTCGTGCACTGCGTTTCA
CAGCTGCTCTTCAACACTCCCTGTGCTGGAAGGACTGATGAATCATTGCAGTTGTGTTCCTAGC
TGGATGAGCAGACACCCCAGTCCAAACATCTGGCTCAAGTGAAGCATAACGTGTGATGCCTTTG
GGAGAAAAAAGGGATCCATAAGGCATTAGCATTTAAGCATTTGCTTTAGGGAGTTGAGGGAACC
AACACCCAACCACCTGAAACACCTGGATGGGGGGGGCCACATCTGTCCCGACAGACAATGAGCA
TAACTGAGCCTGCGATTCTTTCTCCACTTCTGTTGACCTGCTACCCACAGGGTAGTGGCACGGT
ATCCCTCTGGGTCTGGAGACCTCCATTGTTTTATTTTTTGGCTGCCCCTGTGGCATGCGGAAGT
TTTTGGGCCAGAGATTGAATCCATGCCACAGCAGTGACCTGAGCCCCCAGCAGTGACAACACCG
GACTGCTGACTCACTGAGCCACCAGGGAACTCCCAGACCCCTGTTCTTCTCATCTTTGGTTTGT
TGGTGGCACAGACCTGTTACATTAGTTTTTCTGGATAATGAGTAGTTCCCAGAGGAGGCAGCCT
GTCTCCTGGTGTCACCCCAGGACCATGTCCTTCCATGGAGCGGGTGGTATGGGTAGGGGCTGAG
CACGCACCTGCTGTTCCACTGACCAGTAGTGCAGTAGTGTTCATTTTCAAGGCTGCTCTAGCCT
ATCCTAAAGTGAAACGGGAGAGAGCTCAACCCATCTCCAGGCGTTTCTTCCAGATCTGTGTGTG
ATGGGAGCTTGCTTGTCCTCCTGGCCCCCTGCCGTCCTCAACACAAATCTCACCCTCCTAATCA
CTGCAATTTGGGGAATGGGTAGCCGGGCACCTTGTCTTTAATCTCATTTAGTTTTTATTAGACG
TGCTCAGTACTTTTGTTGAGAAAATGGTTTCTTTATCCTAAAGATTATGACTGTTTAAAGTGCT
CTTACATTTTTATGAGTTTTTATTTTGTCTCTGAGGTTTTGTACTCCATGTTCTGGGGTATTCG
TAATTTGGCTCCTGACCACAGTTATTAAAATCTTATTAAAATCCA

hide sequence

RefSeq Acc Id:

XM_021075125 ⟹ XP_020930784

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	15	44,467,823 - 44,492,353 (-)	NCBI

Sequence:

show sequence

GACCCTGACCGGAGGGAGGGCGGGGGCAGCGGTACGGGTCCACGTGGCGCGGCTGGGGCGCAGG
GAGTCCTGGGGACGCACCATCCCGGTTGGAGCCTCCGCTGGGCAAACACGCGCGGGGCCGCGGT
ATTCGACTCAGCATGAGCAAAGTGCCCTGCAAAAAACGTGATGACTATTTGGAGTGGCCTGAGT
ATTTCATGGCAGTGGCCTTCCTGTCAGCACAGAGGAGCAAAGATCCAAATTCCCAGGTCGGAGC
CTGCATCGTGAATGCAGAAAATAAGATTGTGGGCATCGGGTACAATGGAATGCCCAATGGGTGC
AGTGATGACCTCTTGCCTTGGAGGAGGACAGCAGAGAACATCCTGGACACCAAATACCCTTACG
TGTGCCACGCCGAGCTGAATGCCATCATGAACAAAAACTCGGCGGACGTGAAAGGCTGTACCAT
GTATGTCGCCTTGTTCCCGTGTAATGAATGTGCTAAGCTCATCATCCAGGCAGGGATAAAAGAA
GTTATTTTCATGTCTGATAAATACCACGATAGCAATGAGACAACAGCGGCGAGGCTCATGTTTG
AAATGGCCGGGGTTTCCTTCAGAGCAATTCCAAGTTGGCTGCAGACATTTCCTAGACAGTAAGA
CAAATCTGGTGAGAAAACTAGTCATTGATGTCATGTTGTGCAGCTAACTTATTAGAACTCCTGT
GACTCCCTGGTAATTCATGAACTCAGCTAGCTGTAGAACACACAAACCAGGCCACCCCATGCGT
CCTTGTTTTTGTCTTAGTCATTCCTGGCCGGTGTCAGTGTGTCTCTCCGTGTGTTGCCCTCTAA
TTGGCTCTTATGAGAGAAAAAATATCAAGTGAATCCCAGGGAACCTCCTCCCCACCCCACCCCA
CAGAAGATGTTAAGTGAAGCCAAAGTAAACAAATTGCTTAAACTACTCACTGG

hide sequence

RefSeq Acc Id:

XR_002339072

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	15	44,466,312 - 44,492,407 (-)	NCBI

Sequence:

show sequence

CGCGGCGGGACGGCGGCGGCGGCGGCGGGGACGAGCGCCGGCCTGCAGGTCGCGGACCCTGACC
GGAGGGAGGGCGGGGGCAGCGGTACGGGTCCACGTGGCGCGGCTGGGGCGCAGGGAGTCCTGGG
GACGCACCATCCCGGTTGGAGCCTCCGCTGGGCAAACACGCGCGGGGCCGCGGTATTCGACTCA
GCATGAGCAAAGTGCCCTGCAAAAAACGTGATGACTATTTGGAGTGGCCTGAGTATTTCATGGC
AGTGGCCTTCCTGTCAGCACAGAGGAGCAAAGATCCAAATTCCCAGGTCGGAGCCTGCATCGTG
AATGCAGAAAATAAGATTGTGGGCATCGGGTACAATGGAATGCCCAATGGGTGCAGTGATGACC
TCTTGCCTTGGAGGAGGACAGCAGAGAACATCCTGGACACCAAATACCCTTACGAATTCTAATT
TCTCCGATGTCACCTCAGCATCCCTCCCCTGCCCAGCCATCCAGTAGCTGTGGCCTGACGAGCA
CAGAGTGCCTCATCCTGTTCTTCATCCTGAATTCCTCTCAGGGGTTGGTCGGTCAGCAGTGCCT
AATTACTTGACCTTGTAGAACAGAATGGTGGGCAACATTCTTTGTTTTACAGCCTCACCCCTCC
TGGAAGAAGTGTGCCACGCCGAGCTGAATGCCATCATGAACAAAAACTCGGCGGACGTGAAAGG
CTGTACCATGTATGTCGCCTTGTTCCCGTGTAATGAATGTGCTAAGCTCATCATCCAGGCAGGG
ATAAAAGAAGTTATTTTCATGTCTGATAAATACCACGATAGCAATGAGACAACAGCGGCGAGGC
TCATGTTTGAAATGGCCGGGGTTTCCTTCAGGAAATTCACACCAAAGTGCAGCCAGATTGTCAT
TGACTTTGATTCAATTAACAGCAGAGCGAGTGAGACACTCCAGTGAGTGACACGTCATTGCATC
TCCAGATCGGGATTATCCTCTTCTAAGAAGCTCTAATGCCTTTCATCTGGAAGTTATACAGAAC
TTTTTAATAGCCAGGGCAGCACACGTCCACATCTGAAGAACATAAGACCTCCAATCTTCCCGAC
TCTCTCCCGTCACCTAGAATCAGCATCTGTTGAAATTACTGATCGAGGGTTTCAAAGAAAGGAG
CTGTGGATGACCTGTCTCGAAGGTTTGGAGCGGGCGCCTTCCCTCCTGTCCCCTGGTTTGCTGG
GATACTTGTGGCTCTGCAGAAGGGCGTCAGCTGTGTGTCGTGCACTGCGTTTCACAGCTGCTCT
TCAACACTCCCTGTGCTGGAAGGACTGATGAATCATTGCAGTTGTGTTCCTAGCTGGATGAGCA
GACACCCCAGTCCAAACATCTGGCTCAAGTGAAGCATAACGTGTGATGCCTTTGGGAGAAAAAA
GGGATCCATAAGGCATTAGCATTTAAGCATTTGCTTTAGGGAGTTGAGGGAACCAACACCCAAC
CACCTGAAACACCTGGATGGGGGGGGCCACATCTGTCCCGACAGACAATGAGCATAACTGAGCC
TGCGATTCTTTCTCCACTTCTGTTGACCTGCTACCCACAGGGTAGTGGCACGGTATCCCTCTGG
GTCTGGAGACCTCCATTGTTTTATTTTTTGGCTGCCCCTGTGGCATGCGGAAGTTTTTGGGCCA
GAGATTGAATCCATGCCACAGCAGTGACCTGAGCCCCCAGCAGTGACAACACCGGACTGCTGAC
TCACTGAGCCACCAGGGAACTCCCAGACCCCTGTTCTTCTCATCTTTGGTTTGTTGGTGGCACA
GACCTGTTACATTAGTTTTTCTGGATAATGAGTAGTTCCCAGAGGAGGCAGCCTGTCTCCTGGT
GTCACCCCAGGACCATGTCCTTCCATGGAGCGGGTGGTATGGGTAGGGGCTGAGCACGCACCTG
CTGTTCCACTGACCAGTAGTGCAGTAGTGTTCATTTTCAAGGCTGCTCTAGCCTATCCTAAAGT
GAAACGGGAGAGAGCTCAACCCATCTCCAGGCGTTTCTTCCAGATCTGTGTGTGATGGGAGCTT
GCTTGTCCTCCTGGCCCCCTGCCGTCCTCAACACAAATCTCACCCTCCTAATCACTGCAATTTG
GGGAATGGGTAGCCGGGCACCTTGTCTTTAATCTCATTTAGTTTTTATTAGACGTGCTCAGTAC
TTTTGTTGAGAAAATGGTTTCTTTATCCTAAAGATTATGACTGTTTAAAGTGCTCTTACATTTT
TATGAGTTTTTATTTTGTCTCTGAGGTTTTGTACTCCATGTTCTGGGGTATTCGTAATTTGGCT
CCTGACCACAGTTATTAAAATCTTATTAAAATCCA

hide sequence

RefSeq Acc Id:

XR_002339073

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	15	44,466,312 - 44,492,399 (-)	NCBI

Sequence:

show sequence

GACGGCGGCGGCGGCGGCGGGGACGAGCGCCGGCCTGCAGGTCGCGGACCCTGACCGGAGGGAG
GGCGGGGGCAGCGGTACGGGTCCACGTGGCGCGGCTGGGGCGCAGGGAGTCCTGGGGACGCACC
ATCCCGGTTGGAGCCTCCGCTGGGCAAACACGCGCGGGGCCGCGGTATTCGACTCAGCATGAGC
AAAGTGCCCTGCAAAAAACGTGATGACTATTTGGAGTGGCCTGAGTATTTCATGGCAGTGGCCT
TCCTGTCAGCACAGAGGAGCAAAGATCCAAATTCCCAGGTCGGAGCCTGCATCGTGAATGCAGA
AAATAAGATTGTGGGCATCGGGTACAATGGAATGCCCAATGGGTGCAGTGATGACCTCTTGCCT
TGGAGGAGGACAGCAGAGAACATCCTGGACACCAAATACCCTTACGAATTCTAATTTCTCCGAT
GTCACCTCAGCATCCCTCCCCTGCCCAGCCATCCAGTAGCTGTGGCCTGACGTGTGCCACGCCG
AGCTGAATGCCATCATGAACAAAAACTCGGCGGACGTGAAAGGCTGTACCATGTATGTCGCCTT
GTTCCCGTGTAATGAATGTGCTAAGCTCATCATCCAGGCAGGGATAAAAGAAGTTATTTTCATG
TCTGATAAATACCACGATAGCAATGAGACAACAGCGGCGAGGCTCATGTTTGAAATGGCCGGGG
TTTCCTTCAGGAAATTCACACCAAAGTGCAGCCAGATTGTCATTGACTTTGATTCAATTAACAG
CAGAGCGAGTGAGACACTCCAGTGAGTGACACGTCATTGCATCTCCAGATCGGGATTATCCTCT
TCTAAGAAGCTCTAATGCCTTTCATCTGGAAGTTATACAGAACTTTTTAATAGCCAGGGCAGCA
CACGTCCACATCTGAAGAACATAAGACCTCCAATCTTCCCGACTCTCTCCCGTCACCTAGAATC
AGCATCTGTTGAAATTACTGATCGAGGGTTTCAAAGAAAGGAGCTGTGGATGACCTGTCTCGAA
GGTTTGGAGCGGGCGCCTTCCCTCCTGTCCCCTGGTTTGCTGGGATACTTGTGGCTCTGCAGAA
GGGCGTCAGCTGTGTGTCGTGCACTGCGTTTCACAGCTGCTCTTCAACACTCCCTGTGCTGGAA
GGACTGATGAATCATTGCAGTTGTGTTCCTAGCTGGATGAGCAGACACCCCAGTCCAAACATCT
GGCTCAAGTGAAGCATAACGTGTGATGCCTTTGGGAGAAAAAAGGGATCCATAAGGCATTAGCA
TTTAAGCATTTGCTTTAGGGAGTTGAGGGAACCAACACCCAACCACCTGAAACACCTGGATGGG
GGGGGCCACATCTGTCCCGACAGACAATGAGCATAACTGAGCCTGCGATTCTTTCTCCACTTCT
GTTGACCTGCTACCCACAGGGTAGTGGCACGGTATCCCTCTGGGTCTGGAGACCTCCATTGTTT
TATTTTTTGGCTGCCCCTGTGGCATGCGGAAGTTTTTGGGCCAGAGATTGAATCCATGCCACAG
CAGTGACCTGAGCCCCCAGCAGTGACAACACCGGACTGCTGACTCACTGAGCCACCAGGGAACT
CCCAGACCCCTGTTCTTCTCATCTTTGGTTTGTTGGTGGCACAGACCTGTTACATTAGTTTTTC
TGGATAATGAGTAGTTCCCAGAGGAGGCAGCCTGTCTCCTGGTGTCACCCCAGGACCATGTCCT
TCCATGGAGCGGGTGGTATGGGTAGGGGCTGAGCACGCACCTGCTGTTCCACTGACCAGTAGTG
CAGTAGTGTTCATTTTCAAGGCTGCTCTAGCCTATCCTAAAGTGAAACGGGAGAGAGCTCAACC
CATCTCCAGGCGTTTCTTCCAGATCTGTGTGTGATGGGAGCTTGCTTGTCCTCCTGGCCCCCTG
CCGTCCTCAACACAAATCTCACCCTCCTAATCACTGCAATTTGGGGAATGGGTAGCCGGGCACC
TTGTCTTTAATCTCATTTAGTTTTTATTAGACGTGCTCAGTACTTTTGTTGAGAAAATGGTTTC
TTTATCCTAAAGATTATGACTGTTTAAAGTGCTCTTACATTTTTATGAGTTTTTATTTTGTCTC
TGAGGTTTTGTACTCCATGTTCTGGGGTATTCGTAATTTGGCTCCTGACCACAGTTATTAAAAT
CTTATTAAAATCCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_001925118	(Get FASTA)	NCBI Sequence Viewer
	XP_005671735	(Get FASTA)	NCBI Sequence Viewer
	XP_005671736	(Get FASTA)	NCBI Sequence Viewer
	XP_005671737	(Get FASTA)	NCBI Sequence Viewer
	XP_013839472	(Get FASTA)	NCBI Sequence Viewer
	XP_020930783	(Get FASTA)	NCBI Sequence Viewer
	XP_020930784	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000041989
	ENSSSCP00000041989.3
	ENSSSCP00005025750.1
	ENSSSCP00015035218.1
	ENSSSCP00015035258.1
	ENSSSCP00025021890.1
	ENSSSCP00025021905.1
	ENSSSCP00030031105.1
	ENSSSCP00035007449.1
	ENSSSCP00040019000.1
	ENSSSCP00045025066.1
	ENSSSCP00050039969.1
	ENSSSCP00055000811.1
	ENSSSCP00055000826.1
	ENSSSCP00060015936.1
	ENSSSCP00060015940.1
	ENSSSCP00065000898.1
	ENSSSCP00065000901.1
	ENSSSCP00070046402.1
	ENSSSCP00070046403.1

RefSeq Acc Id:	XP_020930783 ⟸ XM_021075124
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1VYR1 (UniProtKB/TrEMBL), A0A8D1PBY9 (UniProtKB/TrEMBL), A0A8D1UXL0 (UniProtKB/TrEMBL), A0A8D0RW23 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKVPCKKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNAENKIVGIGYNGMPNGCSDDL LPWRRTAENILDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNECAKLIIQAGIKEVIFM SDKYHDSNETTAARLMFEMAGVSFRKFTPKCSQIVIDFDSINSRASETLQ hide sequence

RefSeq Acc Id:	XP_005671735 ⟸ XM_005671678
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1VYR1 (UniProtKB/TrEMBL), A0A8D1PBY9 (UniProtKB/TrEMBL), A0A8D1UXL0 (UniProtKB/TrEMBL), A0A8D0RW23 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKVPCKKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNAENKIVGIGYNGMPNGCSDDL LPWRRTAENILDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNECAKLIIQAGIKEVIFM SDKYHDSNETTAARLMFEMAGVSFRKFTPKCSQIVIDFDSINSRASETLQ hide sequence

RefSeq Acc Id:	XP_005671737 ⟸ XM_005671680
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1VYR1 (UniProtKB/TrEMBL), A0A8D1PBY9 (UniProtKB/TrEMBL), A0A8D1UXL0 (UniProtKB/TrEMBL), A0A8D0RW23 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKVPCKKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNAENKIVGIGYNGMPNGCSDDL LPWRRTAENILDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNECAKLIIQAGIKEVIFM SDKYHDSNETTAARLMFEMAGVSFRKFTPKCSQIVIDFDSINSRASETLQ hide sequence

RefSeq Acc Id:	XP_001925118 ⟸ XM_001925083
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1VYR1 (UniProtKB/TrEMBL), A0A8D1PBY9 (UniProtKB/TrEMBL), A0A8D1UXL0 (UniProtKB/TrEMBL), A0A8D0RW23 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKVPCKKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNAENKIVGIGYNGMPNGCSDDL LPWRRTAENILDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNECAKLIIQAGIKEVIFM SDKYHDSNETTAARLMFEMAGVSFRKFTPKCSQIVIDFDSINSRASETLQ hide sequence

RefSeq Acc Id:	XP_005671736 ⟸ XM_005671679
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1VYR1 (UniProtKB/TrEMBL), A0A8D1PBY9 (UniProtKB/TrEMBL), A0A8D1UXL0 (UniProtKB/TrEMBL), A0A8D0RW23 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKVPCKKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNAENKIVGIGYNGMPNGCSDDL LPWRRTAENILDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNECAKLIIQAGIKEVIFM SDKYHDSNETTAARLMFEMAGVSFRKFTPKCSQIVIDFDSINSRASETLQ hide sequence

RefSeq Acc Id:	XP_013839472 ⟸ XM_013984018
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1VYR1 (UniProtKB/TrEMBL), A0A8D1PBY9 (UniProtKB/TrEMBL), A0A8D1UXL0 (UniProtKB/TrEMBL), A0A8D0RW23 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKVPCKKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNAENKIVGIGYNGMPNGCSDDL LPWRRTAENILDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNECAKLIIQAGIKEVIFM SDKYHDSNETTAARLMFEMAGVSFRKFTPKCSQIVIDFDSINSRASETLQ hide sequence

RefSeq Acc Id:	XP_020930784 ⟸ XM_021075125
- Peptide Label:	isoform X2
- UniProtKB:	A0A4X1VWH6 (UniProtKB/TrEMBL), A0A287ADA1 (UniProtKB/TrEMBL), A0A8D0YYT3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKVPCKKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNAENKIVGIGYNGMPNGCSDDL LPWRRTAENILDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNECAKLIIQAGIKEVIFM SDKYHDSNETTAARLMFEMAGVSFRAIPSWLQTFPRQ hide sequence

RefSeq Acc Id:

ENSSSCP00000016715 ⟸ ENSSSCT00000017176

RefSeq Acc Id:

ENSSSCP00000041989 ⟸ ENSSSCT00000063276

Protein Domains

CMP/dCMP-type deaminase

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000015775	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005026538	UniProtKB/TrEMBL
	ENSSSCG00015064682	UniProtKB/TrEMBL
	ENSSSCG00025037674	UniProtKB/TrEMBL
	ENSSSCG00030048666	UniProtKB/TrEMBL
	ENSSSCG00035016216	UniProtKB/TrEMBL
	ENSSSCG00040033569	UniProtKB/TrEMBL
	ENSSSCG00045021110	UniProtKB/TrEMBL
	ENSSSCG00050067953	UniProtKB/TrEMBL
	ENSSSCG00055000636	UniProtKB/TrEMBL
	ENSSSCG00060027652	UniProtKB/TrEMBL
	ENSSSCG00065002165	UniProtKB/TrEMBL
	ENSSSCG00070027276	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000063276	ENTREZGENE
	ENSSSCT00000063276.3	UniProtKB/TrEMBL
	ENSSSCT00005042097.1	UniProtKB/TrEMBL
	ENSSSCT00015086562.1	UniProtKB/TrEMBL
	ENSSSCT00015086641.1	UniProtKB/TrEMBL
	ENSSSCT00025051284.1	UniProtKB/TrEMBL
	ENSSSCT00025051331.1	UniProtKB/TrEMBL
	ENSSSCT00030067962.1	UniProtKB/TrEMBL
	ENSSSCT00035020705.1	UniProtKB/TrEMBL
	ENSSSCT00040045215.1	UniProtKB/TrEMBL
	ENSSSCT00045036047.1	UniProtKB/TrEMBL
	ENSSSCT00050092718.1	UniProtKB/TrEMBL
	ENSSSCT00055001112.1	UniProtKB/TrEMBL
	ENSSSCT00055001131.1	UniProtKB/TrEMBL
	ENSSSCT00060037439.1	UniProtKB/TrEMBL
	ENSSSCT00060037449.1	UniProtKB/TrEMBL
	ENSSSCT00065002693.1	UniProtKB/TrEMBL
	ENSSSCT00065002704.1	UniProtKB/TrEMBL
	ENSSSCT00070054702.1	UniProtKB/TrEMBL
	ENSSSCT00070054703.1	UniProtKB/TrEMBL
Gene3D-CATH	Cytidine Deaminase, domain 2	UniProtKB/TrEMBL
InterPro	APOBEC/CMP_deaminase_Zn-bd	UniProtKB/TrEMBL
	CMP_dCMP_dom	UniProtKB/TrEMBL
	Cytidine_deaminase-like	UniProtKB/TrEMBL
	dCMP_deaminase	UniProtKB/TrEMBL
	dCMP_deaminase-rel	UniProtKB/TrEMBL
	Deoxycytidylate_deaminase_dom	UniProtKB/TrEMBL
KEGG Report	ssc:100154836	UniProtKB/TrEMBL
NCBI Gene	DCTD	ENTREZGENE
PANTHER	DEOXYCYTIDYLATE DEAMINASE	UniProtKB/TrEMBL
	PTHR11086	UniProtKB/TrEMBL
Pfam	dCMP_cyt_deam_1	UniProtKB/TrEMBL
PIRSF	dCMP_deaminase	UniProtKB/TrEMBL
PROSITE	CYT_DCMP_DEAMINASES_1	UniProtKB/TrEMBL
	CYT_DCMP_DEAMINASES_2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53927	UniProtKB/TrEMBL
UniProt	A0A287ADA1	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1VWH6	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1VYR1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0RW23	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0YYT3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1CB19_PIG	UniProtKB/TrEMBL
	A0A8D1PBY9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1UXL0	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:96151	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - SMPDB

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Imported Disease Annotations - ClinVar

Imported Annotations - SMPDB