Advanced Search (OLGA)

Gene: RBP4 (retinol binding protein 4) Sus scrofa

Analyze

Symbol:

RBP4

Name:

retinol binding protein 4

RGD ID:

13906471

Description:

ENCODES a protein that exhibits retinol binding; molecular carrier activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cardiac muscle tissue development (ortholog); detection of light stimulus involved in visual perception (ortholog); embryonic organ morphogenesis (ortholog); PARTICIPATES IN retinoic acid metabolic pathway; ASSOCIATED WITH Acute Coronary Syndrome (ortholog); acute pyelonephritis (ortholog); Alcoholic Liver Diseases (ortholog); FOUND IN extracellular space; extracellular region (ortholog); protein-containing complex (ortholog); INTERACTS WITH ammonia; deoxynivalenol; progesterone

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Plasma retinol-binding protein; PRBP; RBP; retinol-binding protein 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RBP4 (retinol binding protein 4)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, Panther, Treefam
Mus musculus (house mouse):	Rbp4 (retinol binding protein 4, plasma)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Rbp4 (retinol binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rbp4 (retinol binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RBP4 (retinol binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RBP4 (retinol binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rbp4 (retinol binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RBP4 (retinol binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rbp4 (retinol binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	105,037,464 - 105,044,765 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	105,037,360 - 105,044,552 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	114,769,053 - 114,775,781 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Acute Coronary Syndrome (ISO)

acute pyelonephritis (ISO)

Alcoholic Liver Diseases (ISO)

Animal Mammary Neoplasms (ISO)

Anophthalmia (ISO)

anterior segment dysgenesis (ISO)

aortic disease (ISO)

Arteriovenous Fistula (ISO)

atherosclerosis (ISO)

Breast Neoplasms (ISO)

carcinoma (ISO)

Cardiomegaly (ISO)

Carotid Atherosclerosis (ISO)

cerebral infarction (ISO)

chronic kidney disease (ISO)

coloboma (ISO)

colon adenoma (ISO)

congestive heart failure (ISO)

coronary artery disease (ISO)

Coronary Disease (ISO)

diabetic angiopathy (ISO)

Diabetic Nephropathies (ISO)

diabetic retinopathy (ISO)

dilated cardiomyopathy (ISO)

Dyslipidemias (ISO)

essential hypertension (ISO)

Experimental Liver Cirrhosis (ISO)

Experimental Mammary Neoplasms (ISO)

Eye Abnormalities (ISO)

familial hypercholesterolemia (ISO)

familial temporal lobe epilepsy 1 (ISO)

fundus dystrophy (ISO)

gallbladder cancer (ISO)

genetic disease (ISO)

gestational diabetes (ISO)

hyperinsulinism (ISO)

hypertension (ISO)

Hypertriglyceridemia (ISO)

Insulin Resistance (ISO)

Jaundice (ISO)

keratomalacia (ISO)

kidney disease (ISO)

liver cirrhosis (ISO)

Metabolic Syndrome (ISO)

microphthalmia (ISO)

Microphthalmia/Coloboma 10 (ISO)

myocardial infarction (ISO)

Necrosis (ISO)

obesity (ISO)

Pediatric Obesity (ISO)

polycystic ovary syndrome (ISO)

pre-eclampsia (ISO)

Pregnancy-Induced Hypertension (ISO)

Prehypertension (ISO)

proliferative diabetic retinopathy (ISO)

psoriasis (ISO)

Retinal Dystrophy, Iris Coloboma, and Comedogenic Acne Syndrome (ISO)

severe pre-eclampsia (ISO)

Spontaneous Abortions (ISO)

Stable Angina (ISO)

Stomach Neoplasms (ISO)

systemic scleroderma (ISO)

type 2 diabetes mellitus (ISO)

Vision Disorders (ISO)

Vitamin A Deficiency (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

ammonia (EXP)

deoxynivalenol (EXP)

progesterone (EXP)

resveratrol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cardiac muscle tissue development (ISO)

detection of light stimulus involved in visual perception (ISO)

embryonic organ morphogenesis (ISO)

embryonic retina morphogenesis in camera-type eye (ISO)

embryonic skeletal system development (ISO)

eye development (IEA)

female genitalia morphogenesis (ISO)

gluconeogenesis (IEA)

glucose homeostasis (IEA)

heart development (ISO)

heart trabecula formation (ISO)

lung development (ISO)

maintenance of gastrointestinal epithelium (IEA)

male gonad development (ISO)

negative regulation of cardiac muscle cell proliferation (ISO)

phototransduction, visible light (ISO)

positive regulation of immunoglobulin production (ISO)

positive regulation of insulin secretion (IEA)

response to ethanol (ISO)

response to insulin (ISO)

response to muscle activity (ISO)

response to retinoic acid (IEA)

response to xenobiotic stimulus (ISO)

retina development in camera-type eye (ISO)

retinal metabolic process (ISO)

retinoid metabolic process (ISO)

retinol metabolic process (IEA,ISO)

retinol transport (IBA,IEA,ISO)

spermatogenesis (ISO)

urinary bladder development (ISO)

uterus development (ISO)

vagina development (ISO)

vitamin A import into cell (ISO)

Cellular Component

extracellular region (IEA,ISO)

extracellular space (IBA,IDA,IEA,ISO)

protein-containing complex (ISO)

Molecular Function

molecular carrier activity (ISO)

protein binding (ISO)

protein-containing complex binding (ISO)

retinal binding (IEA)

retinoid binding (IEA)

retinol binding (IBA,IDA,IEA,ISO)

retinol transmembrane transporter activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

retinoic acid metabolic pathway (ISO)

References

Additional References at PubMed

PMID:1723146	PMID:2340335	PMID:9757135	PMID:14681463	PMID:15679890	PMID:17145712	PMID:17177694	PMID:18537906	PMID:19138903	PMID:20466637	PMID:20576168	PMID:21113678
PMID:22301074	PMID:23859018	PMID:27824510	PMID:30032202	PMID:31025395

Genomics

Comparative Map Data

RBP4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	105,037,464 - 105,044,765 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	105,037,360 - 105,044,552 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	114,769,053 - 114,775,781 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RBP4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	93,591,694 - 93,601,744 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	93,591,687 - 93,601,744 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	95,351,451 - 95,361,501 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	95,341,583 - 95,350,983 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	95,341,583 - 95,350,983	NCBI
Celera	10	89,092,718 - 89,102,118 (-)	NCBI		Celera
Cytogenetic Map	10	q23.33	NCBI
HuRef	10	88,979,353 - 88,988,753 (-)	NCBI		HuRef
CHM1_1	10	95,634,147 - 95,643,547 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	94,471,646 - 94,481,695 (-)	NCBI		T2T-CHM13v2.0

Rbp4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	38,105,068 - 38,113,769 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	38,105,077 - 38,113,729 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	38,116,620 - 38,125,321 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	38,116,629 - 38,125,281 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	38,191,110 - 38,199,811 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	38,181,773 - 38,190,392 (-)	NCBI		MGSCv36	mm8
Celera	19	38,908,311 - 38,919,212 (-)	NCBI		Celera
Cytogenetic Map	19	C2	NCBI
cM Map	19	32.75	NCBI

Rbp4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	245,306,349 - 245,313,551 (-)	NCBI		GRCr8
mRatBN7.2	1	235,893,917 - 235,901,315 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	235,893,917 - 235,901,399 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	244,315,318 - 244,322,517 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	251,211,097 - 251,218,299 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	244,049,331 - 244,056,533 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	256,806,476 - 256,813,678 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	256,806,472 - 256,813,711 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	264,286,998 - 264,294,396 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	242,443,795 - 242,450,997 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	242,637,193 - 242,644,147 (-)	NCBI
Celera	1	232,987,269 - 232,994,470 (-)	NCBI		Celera
RH 3.4 Map	1	1581.5	RGD
Cytogenetic Map	1	q53	NCBI

Rbp4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955507	108,669 - 120,584 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955507	112,342 - 120,050 (-)	NCBI	ChiLan1.0	ChiLan1.0

RBP4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	105,629,725 - 105,639,359 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	105,635,040 - 105,644,675 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	90,337,879 - 90,347,530 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	93,848,166 - 93,857,679 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	93,848,166 - 93,857,887 (-)	Ensembl	panpan1.1		panPan2

RBP4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	7,822,936 - 7,830,735 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	7,822,944 - 7,830,750 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	7,999,367 - 8,007,133 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	8,083,216 - 8,090,965 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	8,083,226 - 8,090,980 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	7,802,939 - 7,810,708 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	7,832,158 - 7,839,906 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	8,002,083 - 8,009,832 (-)	NCBI		UU_Cfam_GSD_1.0

Rbp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	39,768,612 - 39,777,592 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936601	1,402,691 - 1,410,208 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936601	1,401,215 - 1,410,195 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBP4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	86,831,042 - 86,840,668 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	86,830,957 - 86,840,250 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	47,606,135 - 47,615,805 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rbp4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	4,791,628 - 4,800,989 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624737	4,795,054 - 4,800,830 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in RBP4
145 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system
6	2	21	3	2	8	6	21	2	4

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_214057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021072103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002338287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK233463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK346172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK346239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY609896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CT954211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ344026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU235741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU263980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FJ869919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GU932906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KC865727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KC865728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KC865729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KC865730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M68860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000011467 ⟹ ENSSSCP00000011168

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	14	105,037,464 - 105,044,765 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000061402 ⟹ ENSSSCP00000038691

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	14	105,036,770 - 105,044,765 (-)	Ensembl

RefSeq Acc Id:

NM_214057 ⟹ NP_999222

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	105,037,463 - 105,044,191 (-)	NCBI

Sequence:

show sequence

GCGCGCCTGGACCCGCGGCCACGCTTGCGCGCAGCTCCCGACGGGCGGACTCCGGAGCAAGATG
GAATGGGTTTGGGCGCTCGTGCTACTGGCGGCGCTGGGCAGCGCCCAGGCAGAGCGCGACTGCC
GAGTGAGCAGCTTCCGAGTCAAAGAGAACTTCGACAAGGCTCGTTTCTCCGGCACCTGGTACGC
CATGGCCAAGAAGGACCCCGAGGGACTCTTTCTGCAGGACAACATCGTCGCCGAATTCTCCGTG
GACGAGAATGGCCACATGAGCGCCACGGCCAAGGGTCGAGTCCGTCTTTTAAATAACTGGGACG
TGTGCGCAGACATGGTGGGCACCTTTACAGACACCGAGGACCCTGCCAAGTTCAAGATGAAGTA
CTGGGGCGTAGCATCCTTCCTCCAGAAAGGAAACGATGACCACTGGATCATCGACACGGACTAT
GACACCTACGCCGCGCAGTACTCCTGCCGCCTCCAGAACCTCGATGGCACCTGCGCCGACAGCT
ACTCCTTCGTGTTTGCCCGAGACCCCCACGGCTTCTCCCCAGAAGTGCAGAAAATTGTGAGGCA
GAGGCAGGAGGAGCTGTGCCTGGCCAGGCAGTACCGGCTGATCACTCACAATGGTTACTGTGAT
GGCAAATCGGAAAGAAACATTTTGTAGCAACATGGAGGGTGTCACGTTTCATTAGGAAACTTCC
ATTAACCCCTTCAGCCCTCAACTAAACTCCTAGGAGTTTAGTTTGTCCCTCTCTCCTTCCCCCA
CCCCTCCCCTCCTTTCCAGAAACAAAACCTTCAGTACATGTAAAAATATATGTGGGGATGAGTG
AATCTGTTTGCACTCAAATGTATGTCTTCCCTGGAGTTTTCTAAGGAATCATTTGAGGCTTAGG
ATTCCAGACTTTGATTTATTAAATATGTATAGTTACCCGTT

hide sequence

RefSeq Acc Id:

XM_021072103 ⟹ XP_020927762

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	105,037,360 - 105,044,552 (-)	NCBI

Sequence:

show sequence

AACTGGGCCTCGAGGCCACCCCAGGCCGCAGCTGGCGGCCGCTGGCACCGGTGCCGGGTAACTA
GGCCAGAGCTGGTTCCCGCCGCTCGCCGCCGCCGGAGAGTTGGGCTCAGGCGAGGCCACCCCGC
GCGGCAGCTCCACAAGCCCCGGGCGGCGCTGGAGGTGAGGCTCTCGCCCAAAGGGACCCTCCCA
GCGCCCAGGCGGCGGGCGGACTCCGGAGCAAGATGGAATGGGTTTGGGCGCTCGTGCTACTGGC
GGCGCTGGGCAGCGCCCAGGCAGAGCGCGACTGCCGAGTGAGCAGCTTCCGAGTCAAAGAGAAC
TTCGACAAGGCTCGTTTCTCCGGCACCTGGTACGCCATGGCCAAGAAGGACCCCGAGGGGCTCT
TTCTGCAGGACAACATCGTCGCCGAATTCTCCGTGGACGAGAATGGCCACATGAGCGCCACGGC
CAAGGGTCGAGTCCGTCTTTTAAATAACTGGGACGTGTGCGCAGACATGGTGGGCACCTTTACA
GACACCGAGGACCCTGCCAAGTTCAAGATGAAGTACTGGGGCGTAGCATCCTTCCTCCAGAAAG
GAAACGATGACCACTGGATCATCGACACGGACTATGACACCTACGCCGTGCAGTACTCCTGCCG
CCTCCAGAACCTCGATGGCACCTGCGCCGACAGCTACTCCTTCGTGTTTGCCCGAGACCCCCAC
GGCTTCTCCCCAGAAGTGCAGAAAATTGTGAGGCAGAGGCAGGAGGAGCTGTGCCTGGCCAGGC
AGTACCGGCTGATCACTCACAATGGTTACTGTGATGGCAAATCGGAAAGAAACATTTTGTAGCA
ACATGGAGGGTGTCATGTTTCATTAGGAAACTTCCATTAACCCCTTCAGCCCTCAACTAAACTC
CTAGGAGTTTAGTTTGTCCCTCTCTCCTTCCCCCACCCCTCCCCTCCTTTCCAGAAACAAAACC
TTCAGTACATGTAAAAATATATGTGGGGATGAGTGAATCTGTTTGCACTCAAATGTATGTCTTC
CCTGGAGTTTTCTAAGGAATCATTTGAGGCTTAGGATTCCAGACTTTGATTTATTAAAATATGT
ATAGTTACCCGTTTCCTATGATTTGAGTTTTCATTTGTGTTCGCATCTGTGTCAGAGAAAAAAG
TCCTTATCACAACATTGTAAATCAACTATACGTCAATAAAACTTTTAAAAAA

hide sequence

RefSeq Acc Id:

XR_002338287

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	105,037,360 - 105,044,340 (-)	NCBI

Sequence:

show sequence

CAGGGCGCGTTATGCAAGTGCTGGCCCACGGGCCCCGGCGCCTCCCCCTCGGTCTTTCACCCCG
CGCCGTTACGAAAGCGCGACCCCCTCCCCCCGGAGCTATAAAGAGGCCGGGCGGCCCCGCGGCG
CGCTCGCTTCCCTTGCTCCACGCGCGCCTGGACCCGCGGCCACGCTTGCGCGCAGCTCCCGACG
GGCGGACTCCGGAGCAAGATGGAATGGGTTTGGGCGCTCGTGCTACTGGCGGCGCTGGGCAGCG
CCCAGGCAGAGCGCGACTGCCGAGTGAGCAGCTTCCGAGTCAAAGAGAACTTCGACAAGGCTCG
TGTAGGTATCAGCTTCCCGGATCCCCAGCATTCCCCTTTCCCGGCGGTAAGCCGGGCGCTCCGG
GACATCAAACCCTGGTCTCCTCTCTTCCCCAGTTCTCCGGCACCTGGTACGCCATGGCCAAGAA
GGACCCCGAGGGGCTCTTTCTGCAGGACAACATCGTCGCCGAATTCTCCGTGGACGAGAATGGC
CACATGAGCGCCACGGCCAAGGGTCGAGTCCGTCTTTTAAAGTCAGTGGCATCTGGAGGGAGGG
GAGAGGGACTGTGCTCTTTGTGCTGCAGGGTCCCCCGGGCTGAGCGCCCAACTCTGACTGGGGA
GGGAAAGGAGAACCGCGGGTGGGATGGAGGGAAGACACCCTTTGCTTGGCCTGGCTCAGGATCC
ACCTGGCTTTTGCAGTAACTGGGACGTGTGCGCAGACATGGTGGGCACCTTTACAGACACCGAG
GACCCTGCCAAGTTCAAGATGAAGTACTGGGGCGTAGCATCCTTCCTCCAGAAAGGAAGTGAGT
AGTCAGCTCATTGGGACTGTGTTGGGGGATGGGAGGCACACCTCGCCAAATCGCTGGGTTTCTT
CTCCAGCGACACCCTTCTGAAGGATGCTCTGTAAGTGGCTAGAACCCTCAGCATGGCTTGAGGC
TGGCGGGGTCGGGCGGGGGAGGTTGGTGAAGTTGAGAATAGATCAGCCCCTTCATCACCCTACC
CCCTCCCCCCAGCTCAAAAACCTGGCCCAAGCTCAAAAGGACCTTTGGGCTTGTCACGTGACCT
CCTCCTGCCATTTACCCGCGCAGCAGCTCTGTCAGGGCGTGCAGCCTTTTCCATGCTTAGACCT
CCCATCTCAAGTTCTAACTTACATTACTGTTCAACCCGATTTTGTATTTCCTCCATTTGTTTGG
TCTGAATCCCTGAAATAGCTTGACTTCTAGGGGCTCCAGCAGAGGCTCAGAGCCTGCTTGTCCA
AGGACGCTGAGCATTTGTGCACAGGCTTGGCTCACTCCCAGGTGCCCTACCTGCCAATACTGAG
ATTCTATGTCTGGATGACAGGGACCTCTTCTCTTTCTCCCAAGCCCCCCAAATTGTATGGGGGG
CAGGGTGTTGAGGATTCTCGAAAGAGCACCCTAAAATCTGACCTGATGTAGATGTTTGAGAACG
TACACGTGTACGTGCTCTATTTCTCCCCCATTTCTACTAAGTTTCAAACCTGGAGTCTTCTTGG
TACCTAGAGAATAATGCAGCTGGGGGCGGGGGGCAGGGAGGGAGGGGCATATCATGGAATCTTA
GAGAATGGAGAGTTAACCCTGTGAAGGGGGCTCAATATACAGATGAATAAACTGAGGCCACAAG
AAGATAGTGCTCAAGACTTTCATAGCCTGTTGGGAGGTGATACATGAAAATGCTTAATAAGCAC
TCAACAGACATTAGCCATGACCATCATTGTTTGGGGCCCTCCCAAAAAGACCAAAGACTCTCCT
TTGTCCATCTTCCAGATAAAGTCTATCGCTCAGCTAAAGGCATCGTTGTCTGGCTGATATAACA
ACACAGGCTTGACTGTCTACTGTAGTTTCTCCAAGACAAGGTCCCTAGACTGTCTACATTCAGA
CCAGCTGGGGTTCTTGTTAAAAATGAGATTTGCCGGCTCCAACCCAGACTTATTGAAACAGGAA
CTTTTGGGGTGAGGCCTCAGTCTGCATTTTGACTGTGCTCCTTCTCACAGTAAAGCTTGAGAAC
CACTGTTTTAGGTCATTCAATCCAGAGTTGCTTGGCTTACTCCACTCACTTTGCCTTTGCCTGA
CTTCTGGGGGCAATGAGTTAAAAATAGCACCCTGCCCACAATCTGGCTCAGCTGGACTATTAGA
CCTGAGAACCACAGGGAGCCTCTCACCTAGTTGTGTTGGTTTAAAGGGTTGGAGGACACAGGTA
TAGGGAGCTGAAGGGACACATCCCAGGCCCACCGCAGAGAGGAACAGATCTTCAGGATGTCCGG
TCCCTAGAGGCAGCTCCCTCTACCAAGGGTTTTCTTTGGTTTTTGGACTGGCACTCAAAACCTC
TAAACCCACCTAGGTGGGTACAGTGCAGACACAGATATAGTGTAAGCCCATGCCCTGGGAGGGT
AGAGGAGAATGGGAGCCATATGGCCACTGCCTTGATCACGCTCTCTCCCTAGCTCCTCTGCGTG
CAGGTAGCCACTGTCCAAACAGGTTTGGGGTGTCTGGCTCTCCAGGAAGACCCACCCCACATGC
TGGGAATGAGGAGGTTGGAGGACCAAGCTTGTTCTTCCCATCAGCCCCGAGAGGGTTCATCTCT
TGTCTTAGAGGGAGACGCTGGTAAAGATTGCTAATGATTTAAATTCTTCATCTTTGAACTATTT
AGCCAATAAGAACCTGGAGAGAAACCAAACCAATGCAGATTTTCTTTTAAAGTCAAGAAGGGTA
GTCAGTTTTCCTAAAACCAGGCAGTGAAGTTTACTTCCTATGGCAGCATTCACATTCTCGCAAC
AATTCTGGGGAAAAAAAATTAAACCCAATTCTGGGCTTGTGGCTGCTCTGATCATGAATTGGGG
CTCACATTTCAAAGGAGTGTCTGAGGGGTAGGCTGTGACTGACACAGTGAGCCCCATAACCAGG
GAAGAAATGACTTCATTCAAAGAGGAAGAAGACTTTGCCCAGATGCTTGGGAGCCTGTGAGGGG
AGCCGGTGTTCAGGAGGACTTACCAGCAGGCAGCCCCAAGTATCCGTTCCTGACTATCTGCTGA
CCAACAGCGTGGCCACTGCTGTCAAACATCTAGGCGCCCCCTGCACCTGTGCCCCTGACCCCAG
CCTCTGACATTCTCCCCTTGGGAAACCCTAGGAGGTTCAGGGGTAGCTGGCTCAGTTTTCCTTT
TGGCAGGCCTGCCGTGAGCTGAAGAGGGGGCTCACCCCCCACCCCTGTGCAGCTTTCCTGCAGG
GCATGGGTTTGAGTGCCTCCTAGGTGGGCACTCTTGTGGGTCTCAGAGCCAAGGGGCACACCCA
GAGGTGACCTAAGAGAGCATTAGCGATCTTCCTTACACCCTTAAAGCTCAGGGATCTGGGTTCC
TCTGCATTCCTCCCGCTCTGTACATGACCCAGAGCAGAGATCATCCCTTGCTTCATGACCTAGA
TGTGAAAAGGAGACACAGAGGCTTTGGTTTCTTGTCCTCTGCCCACCCCACCCCCCACCCCCGC
CGTTTACTTATTGCCTGGAGACGGTGTGGTATAGAGGCCAGGCGTGGGGACTCCAGAGTCAGAG
GGCATCTCAGTTCTCTGCTACTCTTGGTGATCCTGGGTGAATTATTAATTTCTCTGGGCCTCCG
TTTCCTCATCTGTAAAGTGGGGATGACATAGCCTGCTTTCAAGTCCGTGTGAGGAATAATTGAG
AAAACATTCTTTCTAGCTCTGTGGAGGGTGTCTACACCGTGACTGACACGGAGTTAAGGGCTCA
GAAAGTCCTGGTCATGGTTCTATGTCAACAGGAATGTTAAGTAGAAACGTGACACGTTTTACCA
AATGCAAGGTATTTGGATAAACCCGAGCGGTGTTGTTTCTCCTGGGCCAACCTCTCACATACGT
TCTTATTACCGTGGTTTCCCATCCTGCCTTTGTTGACGTTATTACCACCTTTGTTTACACTTAC
TCTTCATCCCCCTGGCTTACATCCCAGTCTTAGGAAGAAATATAAGCTAATGTCTTCACAGGTG
CAGCTCTGCTTCTGTCAGAGGAGCTCTGAAGGGGACAAGCTCTAAGAGAACATCTGACGTGGGA
GGCTGGGTGGGGACCTCTCGCCCCCAAGGCAGAACCTACCCTCTTGTGCCAGCCTGGAGAAGTG
AGTCGGGTTACGAAGCTGGAATTAGGATGGAGCCAGGAAAGCTGTGACCCAGATCATCCAGTAG
CCTGAGAGGCAGGAGGGCAGGGTGCGAGGATGGGAAGGAGTGATACAGGTCCATGCAGAAGAGA
CTCATCCTGAGGGCGGGGATAACGTAGTTCGGTGGCCACCAGTATCAGCCCCAAGGACACAAGT
GTGTATTGTCAGAAGACGGAGAAGACAGCAGTAGAAAGGTCCATTCTGTGGTTCTCATGGGCCC
ACATTCTCAGTTGTTCCTTGGAAAAATACCATCTCACTTATTGTCAGGGAGAGAAAGAATCATT
GATGTGAATGAGGTTGTACGCCCACACCCCACCGCACCCCAACCTCAGGACTTTTTTCTGTGAA
AGACAAAATCCTTTCTCATTTTCTCAATGTCATCAGAGCTATCAGAATTCCCTGTGGTCTCCTG
CTTCCTAACTCCTGAAACCAGTTGCGGGAAGTGGCTGTTTTCTGGGGCCTGGCGGTGAGTCTCC
TTGACATCCGAGAGGCTGAGGGAGACGCAGTCGCCTTTGGCTTTCTGGCTTGCAGACGATGACC
ACTGGATCATCGACACGGACTATGACACCTACGCCGTGCAGTACTCCTGCCGCCTCCAGAACCT
CGATGGCACCTGCGCCGACAGCTACTCCTTCGTGTTTGCCCGAGACCCCCACGGCTTCTCCCCA
GAAGTGCAGAAAATTGTGAGGCAGAGGCAGGAGGAGCTGTGCCTGGCCAGGCAGTACCGGCTGA
TCACTCACAATGGTTACTGTGATGGCAAATCGGAAAGAAACATTTTGTAGCAACATGGAGGGTG
TCATGTTTCATTAGGAAACTTCCATTAACCCCTTCAGCCCTCAACTAAACTCCTAGGAGTTTAG
TTTGTCCCTCTCTCCTTCCCCCACCCCTCCCCTCCTTTCCAGAAACAAAACCTTCAGTACATGT
AAAAATATATGTGGGGATGAGTGAATCTGTTTGCACTCAAATGTATGTCTTCCCTGGAGTTTTC
TAAGGAATCATTTGAGGCTTAGGATTCCAGACTTTGATTTATTAAAATATGTATAGTTACCCGT
TTCCTATGATTTGAGTTTTCATTTGTGTTCGCATCTGTGTCAGAGAAAAAAGTCCTTATCACAA
CATTGTAAATCAACTATACGTCAATAAAACTTTTAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_999222	(Get FASTA)	NCBI Sequence Viewer
	XP_020927762	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA31113	(Get FASTA)	NCBI Sequence Viewer
	ABC69164	(Get FASTA)	NCBI Sequence Viewer
	ABW96016	(Get FASTA)	NCBI Sequence Viewer
	ABY64543	(Get FASTA)	NCBI Sequence Viewer
	ACZ57804	(Get FASTA)	NCBI Sequence Viewer
	ADF32075	(Get FASTA)	NCBI Sequence Viewer
	AGR85348	(Get FASTA)	NCBI Sequence Viewer
	AGR85349	(Get FASTA)	NCBI Sequence Viewer
	AGR85350	(Get FASTA)	NCBI Sequence Viewer
	AGR85351	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000011168
	ENSSSCP00000011168.2
	ENSSSCP00015022813.1
	ENSSSCP00025004707.1
	ENSSSCP00025004718.1
	ENSSSCP00030030243.1
	ENSSSCP00030030260.1
	ENSSSCP00035014868.1
	ENSSSCP00040009378.1
	ENSSSCP00040009398.1
	ENSSSCP00045002776.1
	ENSSSCP00045002790.1
	ENSSSCP00050045190.1
	ENSSSCP00050045193.1
	ENSSSCP00055046189.1
	ENSSSCP00055046207.1
	ENSSSCP00060000964.1
	ENSSSCP00065001274.1
	ENSSSCP00070032436.1
	ENSSSCP00070032441.1
	ENSSSCP00070032451.1
GenBank Protein	P27485	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_020927762 ⟸ XM_021072103
- Peptide Label:	isoform X1
- UniProtKB:	P27485 (UniProtKB/Swiss-Prot), A0A4X1UUT1 (UniProtKB/TrEMBL), F1SC80 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEWVWALVLLAALGSAQAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFS VDENGHMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTD YDTYAVQYSCRLQNLDGTCADSYSFVFARDPHGFSPEVQKIVRQRQEELCLARQYRLITHNGYC DGKSERNIL hide sequence

RefSeq Acc Id:	NP_999222 ⟸ NM_214057
- Peptide Label:	precursor
- UniProtKB:	P27485 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MEWVWALVLLAALGSAQAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDNIVAEFS VDENGHMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIIDTD YDTYAAQYSCRLQNLDGTCADSYSFVFARDPHGFSPEVQKIVRQRQEELCLARQYRLITHNGYC DGKSERNIL hide sequence

Ensembl Acc Id:

ENSSSCP00000011168 ⟸ ENSSSCT00000011467

Ensembl Acc Id:

ENSSSCP00000038691 ⟸ ENSSSCT00000061402

Protein Domains

Lipocalin/cytosolic fatty-acid binding

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000010479	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015042675	UniProtKB/TrEMBL
	ENSSSCG00025008896	UniProtKB/TrEMBL
	ENSSSCG00030047319	UniProtKB/TrEMBL
	ENSSSCG00035028197	UniProtKB/TrEMBL
	ENSSSCG00040016649	UniProtKB/TrEMBL
	ENSSSCG00045002778	UniProtKB/TrEMBL
	ENSSSCG00050075400	UniProtKB/TrEMBL
	ENSSSCG00055029077	UniProtKB/TrEMBL
	ENSSSCG00060002466	UniProtKB/TrEMBL
	ENSSSCG00065002714	UniProtKB/TrEMBL
	ENSSSCG00070019610	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000011467	ENTREZGENE
	ENSSSCT00000011467.5	UniProtKB/TrEMBL
	ENSSSCT00015056942.1	UniProtKB/TrEMBL
	ENSSSCT00025011806.1	UniProtKB/TrEMBL
	ENSSSCT00025011834.1	UniProtKB/TrEMBL
	ENSSSCT00030066048.1	UniProtKB/TrEMBL
	ENSSSCT00030066081.1	UniProtKB/TrEMBL
	ENSSSCT00035037297.1	UniProtKB/TrEMBL
	ENSSSCT00040022400.1	UniProtKB/TrEMBL
	ENSSSCT00040022433.1	UniProtKB/TrEMBL
	ENSSSCT00045004347.1	UniProtKB/TrEMBL
	ENSSSCT00045004365.1	UniProtKB/TrEMBL
	ENSSSCT00050103373.1	UniProtKB/TrEMBL
	ENSSSCT00050103376.1	UniProtKB/TrEMBL
	ENSSSCT00055057723.1	UniProtKB/TrEMBL
	ENSSSCT00055057745.1	UniProtKB/TrEMBL
	ENSSSCT00060003018.1	UniProtKB/TrEMBL
	ENSSSCT00065003490.1	UniProtKB/TrEMBL
	ENSSSCT00070038759.1	UniProtKB/TrEMBL
	ENSSSCT00070038764.1	UniProtKB/TrEMBL
	ENSSSCT00070038775.1	UniProtKB/TrEMBL
Gene3D-CATH	2.40.128.20	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Calycin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Lipocalin_ApoD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Lipocalin_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Lipocln_cytosolic_FA-bd_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Retinol-bd/Purpurin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	ssc:397124	UniProtKB/Swiss-Prot
NCBI Gene	RBP4	ENTREZGENE
PANTHER	PTHR11873	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RETINOL-BINDING PROTEIN 4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Lipocalin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PIRSF	Lipocalin_ApoD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RBP_purpurin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS	LIPOCALIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RETINOLBNDNG	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	LIPOCALIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF50814	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A4X1UUR6_PIG	UniProtKB/TrEMBL
	A0A4X1UUS0_PIG	UniProtKB/TrEMBL
	A0A4X1UUT1	ENTREZGENE, UniProtKB/TrEMBL
	A8WE73_PIG	UniProtKB/TrEMBL
	D5LIR8_PIG	UniProtKB/TrEMBL
	F1SC80	ENTREZGENE, UniProtKB/TrEMBL
	P27485	ENTREZGENE, UniProtKB/Swiss-Prot
	S5PVD2_PIG	UniProtKB/TrEMBL
	S5QC36_PIG	UniProtKB/TrEMBL
VGNC ID	VGNC:92164	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations