DOCK5 (dedicator of cytokinesis 5) - Rat Genome Database

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Gene: DOCK5 (dedicator of cytokinesis 5) Sus scrofa
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Symbol: DOCK5
Name: dedicator of cytokinesis 5
RGD ID: 13904682
Description: ENCODES a protein that exhibits GTPase activator activity (inferred); guanyl-nucleotide exchange factor activity (inferred); small GTPase binding (inferred); INVOLVED IN bone remodeling (ortholog); podosome assembly (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2E (ortholog); genetic disease (ortholog); prostate cancer (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dedicator of cytokinesis protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl149,197,293 - 9,436,249 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1149,197,280 - 9,438,715 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21410,412,335 - 10,593,481 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA)
cytosol  (IEA)
plasma membrane  (IBA,IEA)
podosome  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
DOCK5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl149,197,293 - 9,436,249 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1149,197,280 - 9,438,715 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21410,412,335 - 10,593,481 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DOCK5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38825,184,689 - 25,415,711 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl825,184,689 - 25,418,082 (+)EnsemblGRCh38hg38GRCh38
GRCh37825,042,204 - 25,273,227 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36825,098,204 - 25,326,536 (+)NCBINCBI36Build 36hg18NCBI36
Build 34825,098,203 - 25,326,535NCBI
Celera824,006,779 - 24,231,488 (+)NCBICelera
Cytogenetic Map8p21.2NCBI
HuRef823,646,114 - 23,815,584 (+)NCBIHuRef
CHM1_1825,243,660 - 25,472,059 (+)NCBICHM1_1
T2T-CHM13v2.0825,463,647 - 25,690,937 (+)NCBIT2T-CHM13v2.0
Dock5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391467,989,377 - 68,171,021 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1467,989,584 - 68,170,891 (-)EnsemblGRCm39 Ensembl
GRCm381467,751,928 - 67,933,572 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1467,752,135 - 67,933,442 (-)EnsemblGRCm38mm10GRCm38
MGSCv371468,369,985 - 68,551,629 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361466,705,258 - 66,886,902 (-)NCBIMGSCv36mm8
Celera1465,509,536 - 65,693,300 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1434.66NCBI
Dock5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81546,155,124 - 46,334,127 (-)NCBIGRCr8
mRatBN7.21541,979,728 - 42,158,733 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1541,979,729 - 42,158,649 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1543,844,391 - 44,023,294 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01544,994,614 - 45,173,520 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01543,439,945 - 43,618,862 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01544,449,108 - 44,627,774 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1544,453,308 - 44,627,765 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01546,969,497 - 47,148,088 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41547,313,859 - 47,491,774 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11547,330,683 - 47,462,329 (-)NCBI
Celera1541,643,960 - 41,822,851 (-)NCBICelera
Cytogenetic Map15p12NCBI
Dock5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540348,146,084 - 48,338,218 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540348,146,616 - 48,338,218 (+)NCBIChiLan1.0ChiLan1.0
DOCK5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2743,723,728 - 43,956,881 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1819,438,094 - 19,671,268 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0824,463,582 - 24,696,736 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1821,372,756 - 21,605,877 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl821,372,756 - 21,605,877 (+)Ensemblpanpan1.1panPan2
DOCK5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12532,046,165 - 32,257,011 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2532,046,527 - 32,283,658 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2532,630,797 - 32,841,994 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02532,245,463 - 32,457,029 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2532,248,523 - 32,457,282 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12532,201,136 - 32,412,574 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02532,050,626 - 32,261,933 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02532,216,436 - 32,428,154 (-)NCBIUU_Cfam_GSD_1.0
Dock5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494310,038,136 - 10,219,086 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367571,289,954 - 1,576,984 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367571,289,941 - 1,419,257 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DOCK5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1823,310,524 - 23,540,174 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl823,310,673 - 23,540,478 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605218,627,353 - 18,861,082 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dock5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475820,255,062 - 20,440,370 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475820,255,036 - 20,444,194 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DOCK5
12429 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 1 7
Low 2 4 3 4 2 16 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000010579   ⟹   ENSSSCP00000010303
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl149,197,293 - 9,436,249 (+)Ensembl
RefSeq Acc Id: XM_021073736   ⟹   XP_020929395
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1149,197,280 - 9,438,715 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020929395 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000010303
  ENSSSCP00000010303.5
  ENSSSCP00045029116.1
  ENSSSCP00065021308.1
RefSeq Acc Id: XP_020929395   ⟸   XM_021073736
- UniProtKB: A0A480V619 (UniProtKB/TrEMBL),   A0A8D1L1H2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000010303   ⟸   ENSSSCT00000010579
Protein Domains
C2 DOCK-type   DOCKER   SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009650 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00045024599 UniProtKB/TrEMBL
  ENSSSCG00065036105 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010579 ENTREZGENE
  ENSSSCT00000010579.5 UniProtKB/TrEMBL
  ENSSSCT00045041938.1 UniProtKB/TrEMBL
  ENSSSCT00065049232.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.350 UniProtKB/TrEMBL
  1.20.58.740 UniProtKB/TrEMBL
  1.25.40.410 UniProtKB/TrEMBL
  2.60.40.150 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  DHR-1_domain UniProtKB/TrEMBL
  DHR-2 UniProtKB/TrEMBL
  DOCK UniProtKB/TrEMBL
  DOCK1/DOCK5 UniProtKB/TrEMBL
  DOCK1_5_SH3 UniProtKB/TrEMBL
  DOCK_C_lobe_A UniProtKB/TrEMBL
  DOCK_C_lobe_C UniProtKB/TrEMBL
  DOCK_N UniProtKB/TrEMBL
  DOCK_N_sub1 UniProtKB/TrEMBL
  DOCKER_Lobe_A UniProtKB/TrEMBL
  DOCKER_Lobe_B UniProtKB/TrEMBL
  DOCKER_Lobe_C UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
NCBI Gene DOCK5 ENTREZGENE
PANTHER PTHR45653 UniProtKB/TrEMBL
  PTHR45653:SF3 UniProtKB/TrEMBL
Pfam DHR-2 UniProtKB/TrEMBL
  DHR-2_Lobe_B UniProtKB/TrEMBL
  DHR-2_Lobe_C UniProtKB/TrEMBL
  DOCK-C2 UniProtKB/TrEMBL
  DOCK_N UniProtKB/TrEMBL
  SH3_1 UniProtKB/TrEMBL
PROSITE DHR_1 UniProtKB/TrEMBL
  DHR_2 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART SH3 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
UniProt A0A480V619 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1L1H2 ENTREZGENE, UniProtKB/TrEMBL
  F1RJU3_PIG UniProtKB/TrEMBL
VGNC ID VGNC:87395 ENTREZGENE