MYBBP1A (MYB binding protein 1a) - Rat Genome Database

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Gene: MYBBP1A (MYB binding protein 1a) Sus scrofa
Analyze
Symbol: MYBBP1A
Name: MYB binding protein 1a
RGD ID: 13903772
Description: ENCODES a protein that exhibits sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); regulation of G1 to G0 transition (ortholog); respiratory electron transport chain (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Meniere's disease (ortholog); Prostatic Neoplasms (ortholog); FOUND IN B-WICH complex (inferred); cytoplasm (inferred); intracellular membrane-bounded organelle (inferred); INTERACTS WITH ammonia; deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myb-binding protein 1A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1250,491,044 - 50,506,050 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11250,491,042 - 50,506,085 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21252,489,615 - 52,504,655 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
ammonia  (EXP)
deoxynivalenol  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MYBBP1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1250,491,044 - 50,506,050 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11250,491,042 - 50,506,085 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21252,489,615 - 52,504,655 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MYBBP1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,538,904 - 4,555,384 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,538,897 - 4,555,386 (-)EnsemblGRCh38hg38GRCh38
GRCh37174,442,199 - 4,458,679 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,388,940 - 4,405,430 (-)NCBINCBI36Build 36hg18NCBI36
Build 34174,388,949 - 4,405,393NCBI
Celera174,454,387 - 4,470,874 (-)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef174,331,585 - 4,348,073 (-)NCBIHuRef
CHM1_1174,451,000 - 4,467,488 (-)NCBICHM1_1
T2T-CHM13v2.0174,428,802 - 4,445,280 (-)NCBIT2T-CHM13v2.0
Mybbp1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,332,153 - 72,342,596 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1172,332,181 - 72,342,594 (+)EnsemblGRCm39 Ensembl
GRCm381172,441,327 - 72,451,770 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,441,355 - 72,451,768 (+)EnsemblGRCm38mm10GRCm38
MGSCv371172,254,880 - 72,265,052 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361172,257,573 - 72,267,745 (+)NCBIMGSCv36mm8
Celera1179,961,852 - 79,972,017 (+)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1144.29NCBI
Mybbp1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81057,555,458 - 57,565,819 (+)NCBIGRCr8
mRatBN7.21057,056,897 - 57,067,258 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1057,056,874 - 57,067,255 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1061,720,100 - 61,730,461 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01061,208,580 - 61,218,941 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01056,707,662 - 56,718,023 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01059,000,400 - 59,010,794 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1059,000,397 - 59,010,903 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01058,739,440 - 58,749,828 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41059,325,648 - 59,335,604 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11059,339,270 - 59,349,227 (+)NCBI
Celera1056,183,820 - 56,193,776 (+)NCBICelera
Cytogenetic Map10q24NCBI
Mybbp1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546712,390,037 - 12,404,971 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546712,390,371 - 12,405,055 (+)NCBIChiLan1.0ChiLan1.0
MYBBP1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,155,536 - 12,172,025 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,123,960 - 14,140,372 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0174,593,741 - 4,610,203 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1174,586,431 - 4,603,097 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl174,586,431 - 4,603,097 (-)Ensemblpanpan1.1panPan2
MYBBP1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1530,528,141 - 30,538,815 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl530,526,720 - 30,539,483 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha530,724,027 - 30,735,636 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0530,628,664 - 30,640,227 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl530,628,666 - 30,640,228 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1530,594,735 - 30,607,922 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0530,553,266 - 30,564,853 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0530,726,713 - 30,738,313 (-)NCBIUU_Cfam_GSD_1.0
Mybbp1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560254,792,432 - 54,805,953 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366771,095,420 - 1,108,496 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366771,095,022 - 1,108,545 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYBBP1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,019,823 - 4,036,811 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl164,016,222 - 4,036,782 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605917,624,771 - 17,641,765 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mybbp1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247867,103,811 - 7,118,569 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MYBBP1A
591 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000019459   ⟹   ENSSSCP00000018942
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1250,491,049 - 50,506,039 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000039275   ⟹   ENSSSCP00000053843
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1250,491,051 - 50,506,050 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000050473   ⟹   ENSSSCP00000036923
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1250,491,051 - 50,506,050 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000092004   ⟹   ENSSSCP00000078108
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1250,491,044 - 50,506,031 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000099114   ⟹   ENSSSCP00000076845
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1250,491,045 - 50,506,033 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000104842   ⟹   ENSSSCP00000079264
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1250,491,051 - 50,506,050 (-)Ensembl
RefSeq Acc Id: XM_005669133   ⟹   XP_005669190
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11250,491,042 - 50,506,085 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021067702   ⟹   XP_020923361
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11250,491,042 - 50,506,076 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005669190   ⟸   XM_005669133
- Peptide Label: isoform X2
- UniProtKB: A0A480KUQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020923361   ⟸   XM_021067702
- Peptide Label: isoform X1
- UniProtKB: A0A8D1UDT0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000053843   ⟸   ENSSSCT00000039275
Ensembl Acc Id: ENSSSCP00000036923   ⟸   ENSSSCT00000050473
Ensembl Acc Id: ENSSSCP00000018942   ⟸   ENSSSCT00000019459
Ensembl Acc Id: ENSSSCP00000076845   ⟸   ENSSSCT00000099114
Ensembl Acc Id: ENSSSCP00000079264   ⟸   ENSSSCT00000104842
Ensembl Acc Id: ENSSSCP00000078108   ⟸   ENSSSCT00000092004


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017882 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005041527 UniProtKB/TrEMBL
  ENSSSCG00045038186 UniProtKB/TrEMBL
  ENSSSCG00055028947 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000019459.5 UniProtKB/TrEMBL
  ENSSSCT00000039275.3 UniProtKB/TrEMBL
  ENSSSCT00000050473.2 UniProtKB/TrEMBL
  ENSSSCT00000092004 ENTREZGENE
  ENSSSCT00000092004.1 UniProtKB/TrEMBL
  ENSSSCT00000099114.1 UniProtKB/TrEMBL
  ENSSSCT00000104842.1 UniProtKB/TrEMBL
  ENSSSCT00005066954.1 UniProtKB/TrEMBL
  ENSSSCT00005067271.1 UniProtKB/TrEMBL
  ENSSSCT00005067304.1 UniProtKB/TrEMBL
  ENSSSCT00005067338.1 UniProtKB/TrEMBL
  ENSSSCT00005067427.1 UniProtKB/TrEMBL
  ENSSSCT00005067458.1 UniProtKB/TrEMBL
  ENSSSCT00045066179.1 UniProtKB/TrEMBL
  ENSSSCT00055057526.1 UniProtKB/TrEMBL
  ENSSSCT00055057661.1 UniProtKB/TrEMBL
  ENSSSCT00055057724.1 UniProtKB/TrEMBL
  ENSSSCT00055057797.1 UniProtKB/TrEMBL
  ENSSSCT00055058010.1 UniProtKB/TrEMBL
  ENSSSCT00055058051.1 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  DNA_pol_V/MYBBP1A UniProtKB/TrEMBL
NCBI Gene MYBBP1A ENTREZGENE
PANTHER MYB-BINDING PROTEIN 1A UniProtKB/TrEMBL
  PTHR13213 UniProtKB/TrEMBL
Pfam DNA_pol_phi UniProtKB/TrEMBL
PRINTS PRICHEXTENSN UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A286ZYY8_PIG UniProtKB/TrEMBL
  A0A287BBE4_PIG UniProtKB/TrEMBL
  A0A480KUQ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0KDF6_PIG UniProtKB/TrEMBL
  A0A8D0KID5_PIG UniProtKB/TrEMBL
  A0A8D0LXI8_PIG UniProtKB/TrEMBL
  A0A8D0LXK7_PIG UniProtKB/TrEMBL
  A0A8D0LXP9_PIG UniProtKB/TrEMBL
  A0A8D0LXR3_PIG UniProtKB/TrEMBL
  A0A8D1S439_PIG UniProtKB/TrEMBL
  A0A8D1S7B7_PIG UniProtKB/TrEMBL
  A0A8D1S7M8_PIG UniProtKB/TrEMBL
  A0A8D1SEY3_PIG UniProtKB/TrEMBL
  A0A8D1SJ36_PIG UniProtKB/TrEMBL
  A0A8D1UDT0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FBZ9_PIG UniProtKB/TrEMBL
  A0A8W4FIG7_PIG UniProtKB/TrEMBL
  A0A8W4FJ57_PIG UniProtKB/TrEMBL
  F1RGP1_PIG UniProtKB/TrEMBL
VGNC ID VGNC:90497 ENTREZGENE