PGR (progesterone receptor) - Rat Genome Database

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Gene: PGR (progesterone receptor) Sus scrofa
Analyze
Symbol: PGR
Name: progesterone receptor
RGD ID: 13903714
Description: ENCODES a protein that exhibits enzyme binding (ortholog); hormone binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN smooth muscle relaxation of the bladder outlet; cellular response to follicle-stimulating hormone stimulus (ortholog); cellular response to gonadotropin stimulus (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); Animal Mammary Neoplasms (ortholog); ataxia telangiectasia (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); cytoplasm (ortholog); INTERACTS WITH 17beta-estradiol
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: p4 receptor; PR
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl932,035,684 - 32,129,221 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1932,035,684 - 32,129,776 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2936,044,789 - 36,138,540 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap9p13-p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:1714838   PMID:9814919   PMID:12672823   PMID:15147732   PMID:15620808   PMID:18547755   PMID:19788520   PMID:20478671  


Genomics

Comparative Map Data
PGR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl932,035,684 - 32,129,221 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1932,035,684 - 32,129,776 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2936,044,789 - 36,138,540 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap9p13-p11NCBI
PGR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl11101,029,624 - 101,129,813 (-)EnsemblGRCh38hg38GRCh38
GRCh3811101,029,624 - 101,130,681 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3711100,900,355 - 101,000,544 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611100,414,313 - 100,506,465 (-)NCBINCBI36hg18NCBI36
Build 3411100,414,312 - 100,506,465NCBI
Celera1198,069,715 - 98,169,894 (-)NCBI
Cytogenetic Map11q22.1NCBI
HuRef1196,837,449 - 96,937,628 (-)NCBIHuRef
CHM1_111100,783,609 - 100,883,736 (-)NCBICHM1_1
Pgr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3998,890,017 - 8,968,612 (+)NCBIGRCm39mm39
GRCm39 Ensembl98,899,834 - 8,968,612 (+)Ensembl
GRCm3898,898,900 - 8,968,611 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl98,899,833 - 8,968,611 (+)EnsemblGRCm38mm10GRCm38
MGSCv3798,899,833 - 8,968,611 (+)NCBIGRCm37mm9NCBIm37
MGSCv3698,862,303 - 8,926,995 (+)NCBImm8
Celera96,279,529 - 6,348,253 (+)NCBICelera
Cytogenetic Map9A1NCBI
Pgr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.286,073,216 - 6,131,552 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl86,072,673 - 6,131,344 (+)Ensembl
Rnor_6.087,128,656 - 7,187,796 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl87,128,656 - 7,187,796 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.087,113,895 - 7,172,761 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.485,784,717 - 5,845,901 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.185,784,716 - 5,845,901 (+)NCBI
Celera87,609,728 - 7,668,047 (+)NCBICelera
Cytogenetic Map8q11NCBI
Pgr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554124,643,839 - 4,693,478 (-)NCBIChiLan1.0ChiLan1.0
PGR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11199,508,571 - 99,598,020 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01195,997,677 - 96,098,866 (-)NCBIMhudiblu_PPA_v0panPan3
PGR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.121447,197 - 552,511 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl21447,319 - 552,511 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha21461,376 - 566,187 (+)NCBI
ROS_Cfam_1.021609,104 - 717,242 (+)NCBI
UMICH_Zoey_3.121392,996 - 497,928 (+)NCBI
UNSW_CanFamBas_1.021478,480 - 583,792 (+)NCBI
UU_Cfam_GSD_1.021532,736 - 637,643 (+)NCBI
Pgr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494784,948,508 - 85,038,416 (-)NCBI
SpeTri2.0NW_0049365516,498,553 - 6,573,212 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PGR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1192,420,970 - 92,519,128 (-)NCBI
ChlSab1.1 Ensembl192,430,453 - 92,517,296 (-)Ensembl
Vero_WHO_p1.0NW_02366604333,353,079 - 33,447,583 (+)NCBI
Pgr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248781,714,196 - 1,769,302 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system renal system reproductive system
High
Medium 1
Low 1 3 17 2 1
Below cutoff 4 1 3 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000016339   ⟹   ENSSSCP00000015900
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl932,035,684 - 32,129,221 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000049229   ⟹   ENSSSCP00000053422
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl932,035,684 - 32,129,221 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000083485   ⟹   ENSSSCP00000065048
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl932,035,684 - 32,129,221 (-)Ensembl
RefSeq Acc Id: NM_001166488   ⟹   NP_001159960
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1932,035,684 - 32,129,221 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002346934
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1932,036,382 - 32,129,776 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001159960 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD13858 (Get FASTA)   NCBI Sequence Viewer  
  AAS66300 (Get FASTA)   NCBI Sequence Viewer  
  ACX50402 (Get FASTA)   NCBI Sequence Viewer  
  CAB76371 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001159960   ⟸   NM_001166488
- UniProtKB: D0EWS6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000053422   ⟸   ENSSSCT00000049229
RefSeq Acc Id: ENSSSCP00000065048   ⟸   ENSSSCT00000083485
RefSeq Acc Id: ENSSSCP00000015900   ⟸   ENSSSCT00000016339
Protein Domains
NR LBD   Nuclear receptor


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000014977 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070011544 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000015900 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000053422 UniProtKB/TrEMBL
  ENSSSCP00000065048 UniProtKB/TrEMBL
  ENSSSCP00070018605 UniProtKB/TrEMBL
  ENSSSCP00070018616 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000016339 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000049229 UniProtKB/TrEMBL
  ENSSSCT00000083485 UniProtKB/TrEMBL
  ENSSSCT00070022481 UniProtKB/TrEMBL
  ENSSSCT00070022493 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/TrEMBL
InterPro NHR_like_dom_sf UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/TrEMBL
  Progest_rcpt UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/TrEMBL
KEGG Report ssc:396805 UniProtKB/TrEMBL
NCBI Gene PGR ENTREZGENE
Pfam Hormone_recep UniProtKB/TrEMBL
  Prog_receptor UniProtKB/TrEMBL
  zf-C4 UniProtKB/TrEMBL
PRINTS PROGESTRONER UniProtKB/TrEMBL
  STRDHORMONER UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/TrEMBL
SMART HOLI UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/TrEMBL
Superfamily-SCOP SSF48508 UniProtKB/TrEMBL
UniProt A0A287BA88_PIG UniProtKB/TrEMBL
  A0A4X1TNQ0_PIG UniProtKB/TrEMBL
  A0A4X1TTN2_PIG UniProtKB/TrEMBL
  A0A5G2QKJ6_PIG UniProtKB/TrEMBL
  D0EWS6 ENTREZGENE, UniProtKB/TrEMBL
  F1SV76_PIG UniProtKB/TrEMBL
VGNC ID VGNC:91362 ENTREZGENE