RPL21 (ribosomal protein L21) - Rat Genome Database

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Gene: RPL21 (ribosomal protein L21) Sus scrofa
Analyze
Symbol: RPL21
Name: ribosomal protein L21
RGD ID: 13903599
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH genetic disease (ortholog); hypotrichosis (ortholog); hypotrichosis 12 (ortholog); FOUND IN cytosolic large ribosomal subunit (ortholog); cytosolic ribosome (ortholog); ribosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L21
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl114,731,986 - 4,738,489 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1114,731,747 - 4,736,177 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2114,197,563 - 4,201,966 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:28057907   PMID:30032202  


Genomics

Comparative Map Data
RPL21
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl114,731,986 - 4,738,489 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1114,731,747 - 4,736,177 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2114,197,563 - 4,201,966 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPL21
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381327,251,558 - 27,256,568 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1327,251,362 - 27,256,691 (+)EnsemblGRCh38hg38GRCh38
GRCh371327,825,695 - 27,830,705 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361326,723,692 - 26,728,705 (+)NCBINCBI36Build 36hg18NCBI36
Build 341326,723,705 - 26,728,700NCBI
Celera138,894,559 - 8,899,578 (+)NCBICelera
Cytogenetic Map13q12.2NCBI
HuRef138,647,762 - 8,652,781 (+)NCBIHuRef
CHM1_11327,794,141 - 27,799,154 (+)NCBICHM1_1
T2T-CHM13v2.01326,472,273 - 26,477,291 (+)NCBIT2T-CHM13v2.0
Rpl21
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395146,769,955 - 146,773,842 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5146,769,700 - 146,773,842 (+)EnsemblGRCm39 Ensembl
GRCm385146,832,890 - 146,837,032 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5146,832,890 - 146,837,032 (+)EnsemblGRCm38mm10GRCm38
MGSCv375147,644,466 - 147,648,608 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365147,143,494 - 147,147,379 (+)NCBIMGSCv36mm8
Celera5144,819,590 - 144,823,759 (+)NCBICelera
Cytogenetic Map5G3NCBI
cM Map586.5NCBI
Rpl21
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,382,516 - 13,386,153 (-)NCBIGRCr8
mRatBN7.2128,268,641 - 8,272,278 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1326,396,173 - 26,396,732 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl388,512,435 - 88,512,917 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl128,267,196 - 8,272,281 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx129,070,396 - 9,073,473 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0129,693,575 - 9,696,652 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0128,717,016 - 8,720,093 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0129,996,919 - 9,999,998 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl129,996,951 - 9,998,779 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1330,799,969 - 30,800,451 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 EnsemblX10,430,847 - 10,431,400 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl391,870,208 - 91,870,690 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01212,104,705 - 12,107,784 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4128,716,675 - 8,719,754 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1128,746,602 - 8,749,682 (-)NCBI
Celera1210,086,177 - 10,089,256 (-)NCBICelera
Cytogenetic Map12p11NCBI
Rpl21
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554976,678,965 - 6,681,419 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554976,676,584 - 6,681,776 (+)NCBIChiLan1.0ChiLan1.0
RPL21
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21426,847,690 - 26,852,933 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11317,956,448 - 17,965,606 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0138,541,343 - 8,546,709 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11326,886,986 - 26,892,281 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1326,886,986 - 26,892,281 (+)Ensemblpanpan1.1panPan2
RPL21
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12512,326,376 - 12,331,398 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2512,326,376 - 12,331,398 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2512,389,740 - 12,394,762 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02512,458,136 - 12,463,158 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2512,458,141 - 12,463,107 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12512,349,127 - 12,354,148 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02512,343,987 - 12,349,005 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02512,388,862 - 12,393,884 (-)NCBIUU_Cfam_GSD_1.0
Rpl21
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945173,413,856 - 173,428,685 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647222,523,470 - 22,538,299 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL21
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.136,445,194 - 6,457,763 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605737,952,260 - 37,957,387 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl21
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477611,262,473 - 11,267,929 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477611,262,214 - 11,267,951 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RPL21
257 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000045322   ⟹   ENSSSCP00000058298
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl114,731,986 - 4,738,489 (+)Ensembl
RefSeq Acc Id: XM_003482864   ⟹   XP_003482912
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1114,731,747 - 4,736,177 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003482865   ⟹   XP_003482913
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1114,732,005 - 4,736,177 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065514   ⟹   XP_020921173
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1114,732,256 - 4,736,177 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065515   ⟹   XP_020921174
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1114,732,461 - 4,736,177 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065516   ⟹   XP_020921175
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1114,732,163 - 4,736,177 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003482912   ⟸   XM_003482864
- UniProtKB: P49666 (UniProtKB/Swiss-Prot),   F1RTJ9 (UniProtKB/Swiss-Prot),   A0A480W0S0 (UniProtKB/TrEMBL),   A0A8D0I3Y3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003482913   ⟸   XM_003482865
- UniProtKB: P49666 (UniProtKB/Swiss-Prot),   F1RTJ9 (UniProtKB/Swiss-Prot),   A0A480W0S0 (UniProtKB/TrEMBL),   A0A8D0I3Y3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020921175   ⟸   XM_021065516
- UniProtKB: P49666 (UniProtKB/Swiss-Prot),   F1RTJ9 (UniProtKB/Swiss-Prot),   A0A480W0S0 (UniProtKB/TrEMBL),   A0A8D0I3Y3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020921173   ⟸   XM_021065514
- UniProtKB: P49666 (UniProtKB/Swiss-Prot),   F1RTJ9 (UniProtKB/Swiss-Prot),   A0A480W0S0 (UniProtKB/TrEMBL),   A0A8D0I3Y3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020921174   ⟸   XM_021065515
- UniProtKB: P49666 (UniProtKB/Swiss-Prot),   F1RTJ9 (UniProtKB/Swiss-Prot),   A0A480W0S0 (UniProtKB/TrEMBL),   A0A8D0I3Y3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000058298   ⟸   ENSSSCT00000045322


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009303 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCG00005006832 UniProtKB/TrEMBL
  ENSSSCG00015073419 UniProtKB/TrEMBL
  ENSSSCG00025050118 UniProtKB/Swiss-Prot
  ENSSSCG00030017902 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00035068194 UniProtKB/Swiss-Prot
  ENSSSCG00040013019 UniProtKB/Swiss-Prot
  ENSSSCG00050003555 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00055023820 UniProtKB/Swiss-Prot
  ENSSSCG00060029569 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00065062470 UniProtKB/Swiss-Prot
  ENSSSCG00070010348 UniProtKB/Swiss-Prot
  ENSSSCG00070023559 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000045322 ENTREZGENE
  ENSSSCT00000045322.2 UniProtKB/Swiss-Prot
  ENSSSCT00005010284.1 UniProtKB/TrEMBL
  ENSSSCT00005010315.1 UniProtKB/TrEMBL
  ENSSSCT00005010361.1 UniProtKB/TrEMBL
  ENSSSCT00015098682.1 UniProtKB/TrEMBL
  ENSSSCT00025068392.1 UniProtKB/Swiss-Prot
  ENSSSCT00030024711.1 UniProtKB/TrEMBL
  ENSSSCT00030024726.1 UniProtKB/Swiss-Prot
  ENSSSCT00035092027.1 UniProtKB/Swiss-Prot
  ENSSSCT00040017272.1 UniProtKB/Swiss-Prot
  ENSSSCT00050004751.1 UniProtKB/TrEMBL
  ENSSSCT00050004765.1 UniProtKB/Swiss-Prot
  ENSSSCT00055046935.1 UniProtKB/Swiss-Prot
  ENSSSCT00060039949.1 UniProtKB/TrEMBL
  ENSSSCT00060039953.1 UniProtKB/Swiss-Prot
  ENSSSCT00065085728.1 UniProtKB/Swiss-Prot
  ENSSSCT00070020149.1 UniProtKB/Swiss-Prot
  ENSSSCT00070046981.1 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.30.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.10.250.3260 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ribosomal_L21_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L21e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L21e_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Translation_prot_SH3-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:100736809 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene RPL21 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L21 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR20981 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_L21e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L21E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50104 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A480W0S0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0I3Y3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0PXX5_PIG UniProtKB/TrEMBL
  F1RTJ9 ENTREZGENE
  P49666 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary F1RTJ9 UniProtKB/Swiss-Prot