UVSSA (UV stimulated scaffold protein A) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: UVSSA (UV stimulated scaffold protein A) Sus scrofa
Analyze
Symbol: UVSSA
Name: UV stimulated scaffold protein A
RGD ID: 13903063
Description: ENCODES a protein that exhibits RNA polymerase II complex binding (inferred); INVOLVED IN protein ubiquitination (inferred); response to UV (inferred); transcription-coupled nucleotide-excision repair (inferred); ASSOCIATED WITH cherubism (ortholog); genetic disease (ortholog); UV-sensitive syndrome (ortholog); FOUND IN chromosome (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UV-stimulated scaffold protein A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8573,426 - 601,944 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18573,299 - 602,617 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IBA,IEA)
nucleoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
UVSSA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8573,426 - 601,944 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18573,299 - 602,617 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
UVSSA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3841,342,011 - 1,395,989 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl41,345,691 - 1,395,989 (+)EnsemblGRCh38hg38GRCh38
GRCh3741,340,996 - 1,381,837 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3641,331,104 - 1,371,732 (+)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map4p16.3NCBI
HuRef41,308,628 - 1,349,495 (+)NCBIHuRef
CHM1_141,340,917 - 1,381,652 (+)NCBICHM1_1
T2T-CHM13v2.041,340,627 - 1,394,173 (+)NCBIT2T-CHM13v2.0
Uvssa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39533,535,868 - 33,578,243 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl533,535,893 - 33,577,098 (+)EnsemblGRCm39 Ensembl
GRCm38533,378,523 - 33,420,899 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl533,378,549 - 33,419,754 (+)EnsemblGRCm38mm10GRCm38
MGSCv37533,721,345 - 33,762,403 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36533,695,553 - 33,739,362 (+)NCBIMGSCv36mm8
Celera530,857,971 - 30,898,922 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map517.6NCBI
Uvssa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81481,535,179 - 81,576,444 (-)NCBIGRCr8
mRatBN7.21477,309,188 - 77,351,922 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1477,314,056 - 77,351,903 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1481,767,777 - 81,803,602 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01483,008,324 - 83,044,153 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01479,453,658 - 79,489,481 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01482,621,028 - 82,658,912 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1482,623,050 - 82,658,891 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1480,605,796 - 80,625,363 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01483,306,349 - 83,344,222 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41483,163,555 - 83,199,401 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11483,172,596 - 83,201,792 (+)NCBI
Celera1476,235,354 - 76,271,195 (-)NCBICelera
Cytogenetic Map14q21NCBI
Uvssa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955514728,522 - 756,348 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955514725,257 - 754,274 (+)NCBIChiLan1.0ChiLan1.0
UVSSA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v231,675,775 - 1,730,773 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan141,647,029 - 1,697,904 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v041,492,716 - 1,532,114 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.141,373,342 - 1,414,370 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl41,373,562 - 1,413,982 (+)Ensemblpanpan1.1panPan2
UVSSA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1362,647,992 - 62,674,830 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl362,649,207 - 62,674,884 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha365,164,269 - 65,191,104 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0363,123,038 - 63,149,871 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl363,122,139 - 63,149,785 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1362,615,036 - 62,641,849 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0362,818,473 - 62,845,272 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0363,177,842 - 63,204,679 (-)NCBIUU_Cfam_GSD_1.0
Uvssa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528568,216,400 - 68,250,638 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647721,918,062 - 21,950,904 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647721,918,091 - 21,950,895 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UVSSA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12747,378,310 - 47,418,861 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2747,378,770 - 47,417,559 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660513,676,911 - 3,758,293 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Uvssa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475525,903,377 - 25,930,043 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475525,904,273 - 25,930,564 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in UVSSA
448 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 4 3 5 2 22 2 3 3
Below cutoff 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000052715   ⟹   ENSSSCP00000051880
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8574,304 - 596,807 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000059145   ⟹   ENSSSCP00000057216
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8573,426 - 601,944 (+)Ensembl
RefSeq Acc Id: XM_021100878   ⟹   XP_020956537
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18573,301 - 602,617 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100879   ⟹   XP_020956538
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18574,065 - 602,617 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100880   ⟹   XP_020956539
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18573,500 - 602,617 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100881   ⟹   XP_020956540
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18573,500 - 602,617 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100882   ⟹   XP_020956541
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18573,438 - 602,617 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021100883   ⟹   XP_020956542
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18573,299 - 591,720 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020956542   ⟸   XM_021100883
- Peptide Label: isoform X2
- UniProtKB: A0A8D2BND6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956537   ⟸   XM_021100878
- Peptide Label: isoform X1
- UniProtKB: A0A8D2BND6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956541   ⟸   XM_021100882
- Peptide Label: isoform X1
- UniProtKB: A0A8D2BND6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956540   ⟸   XM_021100881
- Peptide Label: isoform X1
- UniProtKB: A0A8D2BND6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956539   ⟸   XM_021100880
- Peptide Label: isoform X1
- UniProtKB: A0A8D2BND6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956538   ⟸   XM_021100879
- Peptide Label: isoform X1
- UniProtKB: A0A8D2BND6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000057216   ⟸   ENSSSCT00000059145
RefSeq Acc Id: ENSSSCP00000051880   ⟸   ENSSSCT00000052715

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000037035 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00060054879 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000059145 ENTREZGENE
  ENSSSCT00000059145.3 UniProtKB/TrEMBL
  ENSSSCT00060074744.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.90 UniProtKB/TrEMBL
InterPro ENTH_VHS UniProtKB/TrEMBL
  UVSSA UniProtKB/TrEMBL
  UVSSA_C UniProtKB/TrEMBL
  UVSSA_N_a-solenoid_rpt UniProtKB/TrEMBL
NCBI Gene UVSSA ENTREZGENE
PANTHER PTHR28670 UniProtKB/TrEMBL
  UV-STIMULATED SCAFFOLD PROTEIN A UniProtKB/TrEMBL
Pfam DUF2043 UniProtKB/TrEMBL
  UVSSA_N UniProtKB/TrEMBL
UniProt A0A287BM16_PIG UniProtKB/TrEMBL
  A0A8D2BND6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94790 ENTREZGENE