VAMP4 (vesicle associated membrane protein 4)

Gene: VAMP4 (vesicle associated membrane protein 4) Sus scrofa

Analyze

Symbol:

VAMP4

Name:

vesicle associated membrane protein 4

RGD ID:

13902591

Description:

INVOLVED IN cellular response to type II interferon (ortholog); Golgi to plasma membrane protein transport (ortholog); regulation of Golgi to plasma membrane protein transport (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autoimmune lymphoproliferative syndrome (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN phagocytic vesicle (ortholog); presynaptic endosome membrane (ortholog)

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

vesicle-associated membrane protein 4

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	114,138,330 - 114,174,979 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	114,138,350 - 114,174,996 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	125,606,175 - 125,638,921 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

1q24 Deletion Syndrome (ISO)

autoimmune lymphoproliferative syndrome (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

parathyroid carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to type II interferon (ISO)

endocytic recycling (IEA)

Golgi ribbon formation (IEA)

Golgi to plasma membrane protein transport (ISO)

regulation of Golgi to plasma membrane protein transport (ISO)

regulation of synaptic vesicle endocytosis (ISO)

SNARE complex assembly (IEA)

synaptic vesicle to endosome fusion (ISO)

vesicle-mediated transport (IEA)

Cellular Component

cell surface (IEA)

Golgi apparatus (IEA)

membrane (IEA)

phagocytic vesicle (ISO)

presynaptic endosome membrane (ISO)

SNARE complex (IEA)

trans-Golgi network (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:15679890	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

VAMP4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	114,138,330 - 114,174,979 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	114,138,350 - 114,174,996 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	125,606,175 - 125,638,921 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

VAMP4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	171,700,160 - 171,742,065 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	171,700,160 - 171,742,074 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	171,669,300 - 171,711,205 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	169,938,783 - 169,977,837 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	144,778,698 - 144,820,780 (-)	NCBI		Celera
Cytogenetic Map	1	q24.3	NCBI
HuRef	1	142,893,046 - 142,935,123 (-)	NCBI		HuRef
CHM1_1	1	173,091,387 - 173,133,527 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	171,056,627 - 171,098,537 (-)	NCBI		T2T-CHM13v2.0

Vamp4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	162,398,084 - 162,426,651 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	162,398,084 - 162,426,653 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	162,570,515 - 162,599,082 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	162,570,515 - 162,599,084 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	164,500,959 - 164,529,209 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	164,407,503 - 164,435,753 (+)	NCBI		MGSCv36	mm8
Celera	1	165,015,226 - 165,045,414 (+)	NCBI		Celera
Cytogenetic Map	1	H2.1	NCBI
cM Map	1	70.29	NCBI

Vamp4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	77,453,135 - 77,475,909 (+)	NCBI		GRCr8
mRatBN7.2	13	74,919,872 - 74,942,791 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	74,919,880 - 74,933,686 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	77,495,346 - 77,520,525 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	78,802,728 - 78,825,319 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	76,062,597 - 76,085,190 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	80,460,699 - 80,483,597 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	80,460,694 - 80,483,600 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	85,352,779 - 85,375,559 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	78,247,189 - 78,269,770 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	78,261,180 - 78,280,664 (+)	NCBI
Celera	13	74,670,256 - 74,692,771 (+)	NCBI		Celera
Cytogenetic Map	13	q22	NCBI

Vamp4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	12,223,736 - 12,260,317 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	12,223,736 - 12,260,506 (-)	NCBI	ChiLan1.0	ChiLan1.0

VAMP4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	78,013,280 - 78,058,507 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	77,687,698 - 77,732,898 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	147,192,001 - 147,233,945 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	150,903,134 - 150,944,815 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	150,903,134 - 150,944,815 (-)	Ensembl	panpan1.1		panPan2

VAMP4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	27,278,200 - 27,303,499 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	27,278,231 - 27,302,225 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	26,797,085 - 26,827,670 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	27,078,744 - 27,107,216 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	27,051,313 - 27,107,216 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	26,900,757 - 26,958,730 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	26,935,355 - 26,993,045 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	27,207,418 - 27,232,436 (+)	NCBI		UU_Cfam_GSD_1.0

Vamp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	97,634,092 - 97,669,945 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	15,480,879 - 15,516,945 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	15,480,865 - 15,515,851 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VAMP4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	57,381,143 - 57,421,886 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	57,384,757 - 57,421,893 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	59,006,290 - 59,051,034 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vamp4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624771	9,986,835 - 10,034,112 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in VAMP4
1374 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	1	2	3	4		23		2	2
Low	9	2		1	2		2	1	1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001244707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005653719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013977625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021102024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK237186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK395657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY609450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU928019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01040155	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000016865 ⟹ ENSSSCP00000016414

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	9	114,138,330 - 114,174,976 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000038558 ⟹ ENSSSCP00000046512

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	9	114,138,330 - 114,174,979 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000057061 ⟹ ENSSSCP00000032203

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	9	114,138,354 - 114,175,364 (-)	Ensembl

RefSeq Acc Id:

NM_001244707 ⟹ NP_001231636

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	9	114,142,246 - 114,174,968 (-)	NCBI

Sequence:

show sequence

GATGAGCGGGGGCGCAGCTGCGGCGGAGCGGCTGACGCCGGGTCCGCGCCCACTGTATCCCCCT
CCCTGTTTTCTCCCTCCGCTTCCCACTCCTTCCCCCGCCCGCCCAGAGCTGCCCGCCCGGGAGA
GCTGCTCAGAGCTACCGGGGAGATTCAGGTGGTGAAGACTTAATCTGCTGGGAAGTAGAAGAGT
ACTTCTTCACTTGAAAAATGCCTCCCAAGTTCAAGCGCCACCTAAATGATGATGATGTCACTGG
TTCTGTGAAAAGTGAAAGGAGAAATCTTTTAGAAGATGATTCAGATGAAGAAGAGGACTTTTTT
CTAAGGGGACCATCTGGACCAAGATTTGGACCTAGAAATGATAAAATTAAGCATGTTCAGAATC
AGGTGGATGAAGTCATTGATGTCATGCAAGAAAATATTACAAAGGTAATTGAAAGAGGGGAGAG
ACTAGATGAACTACAGGACAAATCAGAAAGCTTATCGGATAATGCAACAGCTTTTAGCAACAGA
TCCAAACAACTTCGAAGGCAAATGTGGTGGCGCGGATGCAAAATAAAAGCCATCATGGCTTTGG
TTGCTGCTATCCTTTTGTTAGTGATTATCATTCTTGTAGTTGTGAAATACCATACTTGATTTGA
TGACAGATCTTCATTAAACAAAATCTGGGACAGTAATAAAAGATTGCTGCATAATTTAAATGAA
ACCCATGTATATAACTTTCAAAGCTTCTTTTTCAAGAAATTAAGAGGCAAGTGTCACTTCAAAT
TGGAGCACTGAGAATATCCAGTTATCTTCTCCCCTTCCAACAAAATGTGTTTTTAATAATTATG
TTTAAGGCAAAGATAATAGCAACCTCGATTTTACCATATTCCAAGGGTCTGATTTGAAACTAGA
TACTTGCCAGTTCACTATCTGTGTATATAATTTAACACTGATAACAATATTTCATACTGTTATT
TTAATGGCATAAAGACTTGGATTCATTGCATCAAGTTGGGAGTCAGACTGGTGGTCAGGGAGCC
TCTGTAGAGTACCAAATCATTATGCTGAAAGACATGTATAACCATTCGACCAATCTTTGCAAGA
TTTTTCTCATGTTACAATTGCTTTGCAAGCAATTTTCACAGGTTTATGGGTATAGCAAAAGCTA
AATGTTATAAACGTTGCTGCCTTTCAGCTATAACTAAAAACATTCCAGTAAACCTGTTTTTGAC
TGTTTAAGGAAA

hide sequence

RefSeq Acc Id:

XM_005653719 ⟹ XP_005653776

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	9	114,138,350 - 114,174,996 (-)	NCBI

Sequence:

show sequence

CGCCGGGACGCGGAGCGCCGATCGACTCGATGAGCGGGGGCGCAGCTGCGGCGGAGCGGCTGAC
GCCGGGTCCGCGCCCACTGTATCCCCCTCCCTGTTTTCTCCCTCCGCTTCCCACTCCTTCCCCC
GCCCGCCCAGAGCTGCCCGCCCGGGAGAGCTGCTCAGAGCTACCGGGGAGATTCAGGTGGTGAA
GACTTAATCTGCTGGGAAGTAGAAGAGTACTTCTTCACTTGAAAAATGCCTCCCAAGTTCAAGC
GCCACCTAAATGATGATGATGTCACTGGTTCTGTGAAAAGTGAAAGGAGAAATCTTTTAGAAGA
TGATTCAGATGAAGAAGAGGACTTTTTTCTAAGGGGACCATCTGGACCAAGATTTGGACCTAGA
AATGATAAAATTAAGCATGTTCAGAATCAGGTGGATGAAGTCATTGATGTCATGCAAGAAAATA
TTACAAAGGTAATTGAAAGAGGGGAGAGACTAGATGAACTACAGGACAAATCAGAAAGCTTATC
GGATAATGCAACAGCTTTTAGCAACAGATCCAAACAACTTCGAAGGCAAATGTGGTGGCGCGGA
TGCAAATTCTTGTAGTTGTGAAATACCATACTTGATTTGATGACAGATCTTCATTAAACAAAAT
CTGGGACAGTAATAAAAGATTGCTGCATAATTTAAATGAAACCCATGTATATAACTTTCAAAGC
TTCTTTTTCAAGAAATTAAGAGGCAAGTGTCACTTCAAATTGGAGCACTGAGAATATCCAGTTA
TCTTCTCCCCTTCCAACAAAATGTGTTTTTAATAATTATGTTTAAGGCAAAGATAATAGCAACC
TCGATTTTACCATATTCCAAGGGTCTGATTTGAAACTAGATACTTGCCAGTTCACTATCTGTGT
ATATAATTTAACACTGATAACAATATTTCATACTGTTATTTTAATGGCATAAAGACTTGGATTC
ATTGCATCAAGTTGGGAGTCAGACTGGTGGTCAGGGAGCCTCTGTAGAGTACCAAATCATTATG
CTGAAAGACATGTATAACCATTCGACCAATCTTTGCAAGATTTTTCTCATGTTACAATTGCTTT
GCAAGCAATTTTCACAGGTTTATGGGTATAGCAAAAGCTAAATGTTATAAACGTTGCTGCCTTT
CAGCTATAACTAAAAACATTCCAGTAAACCTGTTTTTGACTGTTTAAGGAAATGTGTAGTGATT
TTTTGGTGTTTGGATTATGGAAATGGGAGATTTCAATAGTGTGAAAGCGTAATATGGCACCATA
CAACGAGTAATAAAATTATTGGGGAGTTCCTGTCGTGGCTCAGTGGTTAACAAATCCAACTAGG
AACCATGAGGTTGCAGGTTCAATCCCTGGCCTTGCTCAGTGGGTTAAGGATCCGGTGTTGCTGT
GAGCCATGTGGTGTGGGTCGCAGACGCAGCTCGGATCCCGTGTAGCTGTGGCTCTGGCGTAGGC
CGGCGGCTACAGCTCCAATTGGACCCCTAGCCTGGGAACCTCCATGTGCCACGGGTGCGGCCCT
AGAAATGACAAAAAAGACCAAAAAAAATTATTGGAAAGCATCATTGGAGTATTTGAAAATTATC
AACATAAAGCTACAAGTCATGGTCCACTTTATTTTCAGTTAGCCTCCAATAAGGAAAGACCAGT
CCTCATGTGAGTATATTAAATCCACAAGTAACTTGCTTGCTAATTTTTGTAAATAGCTCTTTAA
TGTCAGCTAGCTCTTTTACAAAAAGTGTGAAAAGTAGCAAAGTCATGTGCTTAGAGTTTGCTAT
TTTTGCATTGTCTAGTTATCTCCTGGGTCATGCATGATATACATACAATCAAGTGTCAAATGAG
CCACAATAATGACTGTAAAGGGTCAGGAGTCTAGGTAAGCAGTTTGTCAGTAACCAAAGGACAA
GGTCACCATTAATCTCAGTCTGTTTTTATAATGATAAAAAGAGTTAACTTGAAAATGTGCCAGC
CTCCTTGGGTTGTTTAAGCATGTCAGAGTGAAAATACATAGTCCTCTAATGTGTGCGAGGAGGA
AGTTTCATAGTAAAATTCAAAGTTCTGTGGGAACTTGTGTACATGGACATTCTCACAATATATA
TAAAACTCTAAATTTGAAATAAGATTAATAGGAAATACCAGTGTTTAAATAAGGAAAAAATGAT
CCTTATAGGGTTCATTGTGGTCACTTTAATATCAAAAATGTATGAAACAGAATTTTTTTTTAAT
ACTACAGCATTAGTATTAAGGTGCAAAAATTTTCTGTTTTTAATGGAAAGAAATTTGAAGGGAG
AAAGCAGATTAAGAAATACTCAAGACATTTGCAAGTTATGAAGATCTAAATATAACTACTAAAT
ATTATAGTCCACTAAGAACATTTAAAAAGAGATAAAGGTCTTACCTACTATGGAGTGTTTTCTC
AGAGGTCTCTTCACTCTTTGTAATGTCAGTTAATAAATACTAAACCCTTTGACAGAGGATGATA
ACCAGGAAAATGAGCATTTTTAGAATTTCAGTAGCTACTACAGAAATGGAAATGCTATGAGTGG
ACCCAATCAGGCCCAACAGGTATATATGTGTCCTTTATTTGGGATTGGAACTAGACTCACCAGT
GGTTAATTTTCCATTATTTGGTGTAGAAGTCTGGTTTCTCCGTATCATCGGTGAAGATGAAGAT
TATTTCTCAAAGAATTCACATTTCCAGTGTTTCTTTAATAAAACTATGCTTTTAAAGAAATAAA
ATTGTAAAATTTTTTAAAAATTTAGCCATGAAAAACAAATATTTATATGACAATATCATATATA
TATATATGTCGTTCTCTTTGTATTTTAAATATATTGCTGCTGAGAATATTGGGGACAGATTTGT
CACTCAGAGCTTTGTACTAGTGGTGGCTTGATTCACAGCTTATCATTTCAGTCTTTCTTGGTTT
TCATTAATCTTGAGAACCTTAAAATGGCTAACATGGCTATTATTCTAAACTTGGAGACATGAGC
CTTCAAAAAAAGAGAAATACACTGTTCAAATTGATGCCAGGCCTACCTTCCTTCCCTCCTTAAT
CATTCTTTTTCCTTCAGCTCAGATGATCTGCCCTTAAAAAATGAAGTTTCCCCACCATCAAAAC
TTTTATTATTTAACAACGAAGATAACAGAAAAAACTTCGAGTAGCTTTGTGAGTACTAGGTGAT
ACCCAGCAAATTCAGGTCACTATTTTTATAATGCTTAAAACATACCCTCATTTTATGTTTAACT
ACTGAAATCTGTTGCCGTGCAGCAATTGTGTGATTAATCCTACTGATTATAACTTAGTAATACC
TATGGGTTTCTTCGTTGTTTGTTTTTTTAGGGCCACAACTGTCCCACAGCATATGGAAGTTCCC
ATGCTAGGGGTCGCATTGGAGTTACAGCAGCTGACCTAAGCCACAGCCACAGCAACGTGGGATC
CGAGCCACGTCTGTGACCTACACCACAGCTCACAGCAACACCGGATCCTTAACCTACTGAGCAA
GGCCAGAGATTGAACTTACATCCTCATCGATCCTAGTCAGGTTCGTTATGCGCTGAGTCACGAA
GGGAACTCCGTACCTGTGGCCTTTTGGCTCCTCTAGAACATTATCCAAAATGGAGGCAGAGTAA
TTAGTACATATCAAATACAGAAAAAGGTTTGTTAGCCCTCCAGTAGATTGCTTATTGTAGTCTC
CCTGTGCCATCACTCTGCTTTGAAAAACTATAACTTCATTTTTTATAGCACAAATTGTCATCTT
TCAATTCTGTGTAGCATGTGGGTATCCTGAAAAGGGTTATATATGTACAAACTGAGCAAAAAGG
ATTTCTCATTGTCTGTACGCTCTTATACATGCTTGATGGCCTGTCAGCATTGTTGCCCACACTG
TCTACATCTATATATATATACTATGATTAGAAAATATGCAAGAGATTTTTTTTCATGTTGAGAG
TGAACGCCATTAGAAGATGTCTTTAATGCATTGAGTCAGTGTTCATAAGTCAAGGAAAACTCTT
ATTAGTTTCATTTTATGTTTTCACCTGGAAATGTGATAGAAGCCAGTTTTTCCCTAAGTAGGGA
ACCAAAACCTGAATCAATCCAATTACATTTATCCATTTGTTTTTGAATGCAATATAGTGCTTAC
ATTTGTTTAGGAAATTGCCGCTAAGCAATGAGACACTGTCTGGAGCTGAAAGGTGCCCTACTTA
CCAAGCCATCCACCGTGTTTCCCATGGCGTAGACAAATTCCTTAGACTGATGTAGGGCTTCGGG
CTTCTGTTTATGTTGGTCTTATTCTTTTTCTCAAGGTCAAGTAGAATAAGGGATAGGTGACACA
AATTGTGATTCTGGCTCCTATTTTATTTAAGAAGCTGCTTGGAACAAGTCAGTAGGAACTGAAA
GGAAAGCATGACCGACTTGATTAAGGGGGACACATGTAAGCTTGGCAAAGCACAGATCACATCA
TATTTGTGTCCCCACAGCACCCAGCATGATGCTCTGTACCTGGCACTTGCTAGGTGAACATGCC
TAGGAAATCACAAAGGCACCAAGTGTGCTCGTACCTAAGTGTGCGTCAGCATCCGGGTCGTTAC
TGCAGGGATGACATGATTGACATAATACGGGGTCTACTGCATTTACTGGGAGATAGCAGTGCTT
CTTATAAAAATTGGGTAAAGAAAAATTCTGACATTATAGTACTCCATTAGGTTATTTTCATTTG
AAAAGTCTTAAAATCAAATAACCTATTAATTAAATACTTTAAGGCTACAAAGTAAATTGCACAA
ATCAGATTTTAGTCAGTAACATGTCAGAAATCAAACTGTAAGAAAGCTCAAGCATTTCGTTTTA
TGCCTGGGGTGTATGTCATTGTTTAAAATTCTACACTATTTAACCATTTTGATAAGTGCCTTTG
ATGTTTTTAAGGGGGATACGAGCAATGTAAATGATGTCCATCCTGTACCTTTCCCAAGTCTTCG
TAACCACTGTTATACCAGTGTTGCCTAGTCCTTAGTGTTCATACCAGATATTTATTTGTAGCCC
CTCCATGGTAAATAGTAAAATAAACCATTTCATAGAAAATAAAA

hide sequence

RefSeq Acc Id:

XM_013977625 ⟹ XP_013833079

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	9	114,138,350 - 114,174,286 (-)	NCBI

Sequence:

show sequence

GTTTTGTGAATAATATCTCCAGGCTTTGGCCAACCAAGTCAGTTATTTCCATGAAGCTGCACGA
ACCAGGCTGTCGATGAGAGATGAGGAAGAGGAGTCAGAAAGGGAACGAGGCTGAGAAAACGGAA
GCCTCTGCCAGATTCAAGCTTTTTGTGAAATGAAGTACTGGGAGTTGTGGTTTGCTTGTTTTTG
TAAAGCAAAAAAGAATACAGCATTTATTAAACAACAGGTGGTGAAGACTTAATCTGCTGGGAAG
TAGAAGAGTACTTCTTCACTTGAAAAATGCCTCCCAAGTTCAAGCGCCACCTAAATGATGATGA
TGTCACTGGTTCTGTGAAAAGTGAAAGGAGAAATCTTTTAGAAGATGATTCAGATGAAGAAGAG
GACTTTTTTCTAAGGGGACCATCTGGACCAAGATTTGGACCTAGAAATGATAAAATTAAGCATG
TTCAGAATCAGGTGGATGAAGTCATTGATGTCATGCAAGAAAATATTACAAAGGTAATTGAAAG
AGGGGAGAGACTAGATGAACTACAGGACAAATCAGAAAGCTTATCGGATAATGCAACAGCTTTT
AGCAACAGATCCAAACAACTTCGAAGGCAAATGTGGTGGCGCGGATGCAAAATAAAAGCCATCA
TGGCTTTGGTTGCTGCTATCCTTTTGTTAGTGATTATCATTCTTGTAGTTGTGAAATACCATAC
TTGATTTGATGACAGATCTTCATTAAACAAAATCTGGGACAGTAATAAAAGATTGCTGCATAAT
TTAAATGAAACCCATGTATATAACTTTCAAAGCTTCTTTTTCAAGAAATTAAGAGGCAAGTGTC
ACTTCAAATTGGAGCACTGAGAATATCCAGTTATCTTCTCCCCTTCCAACAAAATGTGTTTTTA
ATAATTATGTTTAAGGCAAAGATAATAGCAACCTCGATTTTACCATATTCCAAGGGTCTGATTT
GAAACTAGATACTTGCCAGTTCACTATCTGTGTATATAATTTAACACTGATAACAATATTTCAT
ACTGTTATTTTAATGGCATAAAGACTTGGATTCATTGCATCAAGTTGGGAGTCAGACTGGTGGT
CAGGGAGCCTCTGTAGAGTACCAAATCATTATGCTGAAAGACATGTATAACCATTCGACCAATC
TTTGCAAGATTTTTCTCATGTTACAATTGCTTTGCAAGCAATTTTCACAGGTTTATGGGTATAG
CAAAAGCTAAATGTTATAAACGTTGCTGCCTTTCAGCTATAACTAAAAACATTCCAGTAAACCT
GTTTTTGACTGTTTAAGGAAATGTGTAGTGATTTTTTGGTGTTTGGATTATGGAAATGGGAGAT
TTCAATAGTGTGAAAGCGTAATATGGCACCATACAACGAGTAATAAAATTATTGGGGAGTTCCT
GTCGTGGCTCAGTGGTTAACAAATCCAACTAGGAACCATGAGGTTGCAGGTTCAATCCCTGGCC
TTGCTCAGTGGGTTAAGGATCCGGTGTTGCTGTGAGCCATGTGGTGTGGGTCGCAGACGCAGCT
CGGATCCCGTGTAGCTGTGGCTCTGGCGTAGGCCGGCGGCTACAGCTCCAATTGGACCCCTAGC
CTGGGAACCTCCATGTGCCACGGGTGCGGCCCTAGAAATGACAAAAAAGACCAAAAAAAATTAT
TGGAAAGCATCATTGGAGTATTTGAAAATTATCAACATAAAGCTACAAGTCATGGTCCACTTTA
TTTTCAGTTAGCCTCCAATAAGGAAAGACCAGTCCTCATGTGAGTATATTAAATCCACAAGTAA
CTTGCTTGCTAATTTTTGTAAATAGCTCTTTAATGTCAGCTAGCTCTTTTACAAAAAGTGTGAA
AAGTAGCAAAGTCATGTGCTTAGAGTTTGCTATTTTTGCATTGTCTAGTTATCTCCTGGGTCAT
GCATGATATACATACAATCAAGTGTCAAATGAGCCACAATAATGACTGTAAAGGGTCAGGAGTC
TAGGTAAGCAGTTTGTCAGTAACCAAAGGACAAGGTCACCATTAATCTCAGTCTGTTTTTATAA
TGATAAAAAGAGTTAACTTGAAAATGTGCCAGCCTCCTTGGGTTGTTTAAGCATGTCAGAGTGA
AAATACATAGTCCTCTAATGTGTGCGAGGAGGAAGTTTCATAGTAAAATTCAAAGTTCTGTGGG
AACTTGTGTACATGGACATTCTCACAATATATATAAAACTCTAAATTTGAAATAAGATTAATAG
GAAATACCAGTGTTTAAATAAGGAAAAAATGATCCTTATAGGGTTCATTGTGGTCACTTTAATA
TCAAAAATGTATGAAACAGAATTTTTTTTTAATACTACAGCATTAGTATTAAGGTGCAAAAATT
TTCTGTTTTTAATGGAAAGAAATTTGAAGGGAGAAAGCAGATTAAGAAATACTCAAGACATTTG
CAAGTTATGAAGATCTAAATATAACTACTAAATATTATAGTCCACTAAGAACATTTAAAAAGAG
ATAAAGGTCTTACCTACTATGGAGTGTTTTCTCAGAGGTCTCTTCACTCTTTGTAATGTCAGTT
AATAAATACTAAACCCTTTGACAGAGGATGATAACCAGGAAAATGAGCATTTTTAGAATTTCAG
TAGCTACTACAGAAATGGAAATGCTATGAGTGGACCCAATCAGGCCCAACAGGTATATATGTGT
CCTTTATTTGGGATTGGAACTAGACTCACCAGTGGTTAATTTTCCATTATTTGGTGTAGAAGTC
TGGTTTCTCCGTATCATCGGTGAAGATGAAGATTATTTCTCAAAGAATTCACATTTCCAGTGTT
TCTTTAATAAAACTATGCTTTTAAAGAAATAAAATTGTAAAATTTTTTAAAAATTTAGCCATGA
AAAACAAATATTTATATGACAATATCATATATATATATATGTCGTTCTCTTTGTATTTTAAATA
TATTGCTGCTGAGAATATTGGGGACAGATTTGTCACTCAGAGCTTTGTACTAGTGGTGGCTTGA
TTCACAGCTTATCATTTCAGTCTTTCTTGGTTTTCATTAATCTTGAGAACCTTAAAATGGCTAA
CATGGCTATTATTCTAAACTTGGAGACATGAGCCTTCAAAAAAAGAGAAATACACTGTTCAAAT
TGATGCCAGGCCTACCTTCCTTCCCTCCTTAATCATTCTTTTTCCTTCAGCTCAGATGATCTGC
CCTTAAAAAATGAAGTTTCCCCACCATCAAAACTTTTATTATTTAACAACGAAGATAACAGAAA
AAACTTCGAGTAGCTTTGTGAGTACTAGGTGATACCCAGCAAATTCAGGTCACTATTTTTATAA
TGCTTAAAACATACCCTCATTTTATGTTTAACTACTGAAATCTGTTGCCGTGCAGCAATTGTGT
GATTAATCCTACTGATTATAACTTAGTAATACCTATGGGTTTCTTCGTTGTTTGTTTTTTTAGG
GCCACAACTGTCCCACAGCATATGGAAGTTCCCATGCTAGGGGTCGCATTGGAGTTACAGCAGC
TGACCTAAGCCACAGCCACAGCAACGTGGGATCCGAGCCACGTCTGTGACCTACACCACAGCTC
ACAGCAACACCGGATCCTTAACCTACTGAGCAAGGCCAGAGATTGAACTTACATCCTCATCGAT
CCTAGTCAGGTTCGTTATGCGCTGAGTCACGAAGGGAACTCCGTACCTGTGGCCTTTTGGCTCC
TCTAGAACATTATCCAAAATGGAGGCAGAGTAATTAGTACATATCAAATACAGAAAAAGGTTTG
TTAGCCCTCCAGTAGATTGCTTATTGTAGTCTCCCTGTGCCATCACTCTGCTTTGAAAAACTAT
AACTTCATTTTTTATAGCACAAATTGTCATCTTTCAATTCTGTGTAGCATGTGGGTATCCTGAA
AAGGGTTATATATGTACAAACTGAGCAAAAAGGATTTCTCATTGTCTGTACGCTCTTATACATG
CTTGATGGCCTGTCAGCATTGTTGCCCACACTGTCTACATCTATATATATATACTATGATTAGA
AAATATGCAAGAGATTTTTTTTCATGTTGAGAGTGAACGCCATTAGAAGATGTCTTTAATGCAT
TGAGTCAGTGTTCATAAGTCAAGGAAAACTCTTATTAGTTTCATTTTATGTTTTCACCTGGAAA
TGTGATAGAAGCCAGTTTTTCCCTAAGTAGGGAACCAAAACCTGAATCAATCCAATTACATTTA
TCCATTTGTTTTTGAATGCAATATAGTGCTTACATTTGTTTAGGAAATTGCCGCTAAGCAATGA
GACACTGTCTGGAGCTGAAAGGTGCCCTACTTACCAAGCCATCCACCGTGTTTCCCATGGCGTA
GACAAATTCCTTAGACTGATGTAGGGCTTCGGGCTTCTGTTTATGTTGGTCTTATTCTTTTTCT
CAAGGTCAAGTAGAATAAGGGATAGGTGACACAAATTGTGATTCTGGCTCCTATTTTATTTAAG
AAGCTGCTTGGAACAAGTCAGTAGGAACTGAAAGGAAAGCATGACCGACTTGATTAAGGGGGAC
ACATGTAAGCTTGGCAAAGCACAGATCACATCATATTTGTGTCCCCACAGCACCCAGCATGATG
CTCTGTACCTGGCACTTGCTAGGTGAACATGCCTAGGAAATCACAAAGGCACCAAGTGTGCTCG
TACCTAAGTGTGCGTCAGCATCCGGGTCGTTACTGCAGGGATGACATGATTGACATAATACGGG
GTCTACTGCATTTACTGGGAGATAGCAGTGCTTCTTATAAAAATTGGGTAAAGAAAAATTCTGA
CATTATAGTACTCCATTAGGTTATTTTCATTTGAAAAGTCTTAAAATCAAATAACCTATTAATT
AAATACTTTAAGGCTACAAAGTAAATTGCACAAATCAGATTTTAGTCAGTAACATGTCAGAAAT
CAAACTGTAAGAAAGCTCAAGCATTTCGTTTTATGCCTGGGGTGTATGTCATTGTTTAAAATTC
TACACTATTTAACCATTTTGATAAGTGCCTTTGATGTTTTTAAGGGGGATACGAGCAATGTAAA
TGATGTCCATCCTGTACCTTTCCCAAGTCTTCGTAACCACTGTTATACCAGTGTTGCCTAGTCC
TTAGTGTTCATACCAGATATTTATTTGTAGCCCCTCCATGGTAAATAGTAAAATAAACCATTTC
ATAGAAAATAAAA

hide sequence

RefSeq Acc Id:

XM_021102024 ⟹ XP_020957683

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	9	114,138,350 - 114,174,730 (-)	NCBI

Sequence:

show sequence

CCAACGTCCGCGTCAGGCTGGGGGACCAGCCTCGGGGGTAGTGGAGGGAACCCCTAGTGGGAAA
AGGGGTTGGACCGGGGGTGCCCTGAGTGGTGAAGACTTAATCTGCTGGGAAGTAGAAGAGTACT
TCTTCACTTGAAAAATGCCTCCCAAGTTCAAGCGCCACCTAAATGATGATGATGTCACTGGTTC
TGTGAAAAGTGAAAGGAGAAATCTTTTAGAAGATGATTCAGATGAAGAAGAGGACTTTTTTCTA
AGGGGACCATCTGGACCAAGATTTGGACCTAGAAATGATAAAATTAAGCATGTTCAGAATCAGG
TGGATGAAGTCATTGATGTCATGCAAGAAAATATTACAAAGGTAATTGAAAGAGGGGAGAGACT
AGATGAACTACAGGACAAATCAGAAAGCTTATCGGATAATGCAACAGCTTTTAGCAACAGATCC
AAACAACTTCGAAGGCAAATGTGGTGGCGCGGATGCAAAATAAAAGCCATCATGGCTTTGGTTG
CTGCTATCCTTTTGTTAGTGATTATCATTCTTGTAGTTGTGAAATACCATACTTGATTTGATGA
CAGATCTTCATTAAACAAAATCTGGGACAGTAATAAAAGATTGCTGCATAATTTAAATGAAACC
CATGTATATAACTTTCAAAGCTTCTTTTTCAAGAAATTAAGAGGCAAGTGTCACTTCAAATTGG
AGCACTGAGAATATCCAGTTATCTTCTCCCCTTCCAACAAAATGTGTTTTTAATAATTATGTTT
AAGGCAAAGATAATAGCAACCTCGATTTTACCATATTCCAAGGGTCTGATTTGAAACTAGATAC
TTGCCAGTTCACTATCTGTGTATATAATTTAACACTGATAACAATATTTCATACTGTTATTTTA
ATGGCATAAAGACTTGGATTCATTGCATCAAGTTGGGAGTCAGACTGGTGGTCAGGGAGCCTCT
GTAGAGTACCAAATCATTATGCTGAAAGACATGTATAACCATTCGACCAATCTTTGCAAGATTT
TTCTCATGTTACAATTGCTTTGCAAGCAATTTTCACAGGTTTATGGGTATAGCAAAAGCTAAAT
GTTATAAACGTTGCTGCCTTTCAGCTATAACTAAAAACATTCCAGTAAACCTGTTTTTGACTGT
TTAAGGAAATGTGTAGTGATTTTTTGGTGTTTGGATTATGGAAATGGGAGATTTCAATAGTGTG
AAAGCGTAATATGGCACCATACAACGAGTAATAAAATTATTGGGGAGTTCCTGTCGTGGCTCAG
TGGTTAACAAATCCAACTAGGAACCATGAGGTTGCAGGTTCAATCCCTGGCCTTGCTCAGTGGG
TTAAGGATCCGGTGTTGCTGTGAGCCATGTGGTGTGGGTCGCAGACGCAGCTCGGATCCCGTGT
AGCTGTGGCTCTGGCGTAGGCCGGCGGCTACAGCTCCAATTGGACCCCTAGCCTGGGAACCTCC
ATGTGCCACGGGTGCGGCCCTAGAAATGACAAAAAAGACCAAAAAAAATTATTGGAAAGCATCA
TTGGAGTATTTGAAAATTATCAACATAAAGCTACAAGTCATGGTCCACTTTATTTTCAGTTAGC
CTCCAATAAGGAAAGACCAGTCCTCATGTGAGTATATTAAATCCACAAGTAACTTGCTTGCTAA
TTTTTGTAAATAGCTCTTTAATGTCAGCTAGCTCTTTTACAAAAAGTGTGAAAAGTAGCAAAGT
CATGTGCTTAGAGTTTGCTATTTTTGCATTGTCTAGTTATCTCCTGGGTCATGCATGATATACA
TACAATCAAGTGTCAAATGAGCCACAATAATGACTGTAAAGGGTCAGGAGTCTAGGTAAGCAGT
TTGTCAGTAACCAAAGGACAAGGTCACCATTAATCTCAGTCTGTTTTTATAATGATAAAAAGAG
TTAACTTGAAAATGTGCCAGCCTCCTTGGGTTGTTTAAGCATGTCAGAGTGAAAATACATAGTC
CTCTAATGTGTGCGAGGAGGAAGTTTCATAGTAAAATTCAAAGTTCTGTGGGAACTTGTGTACA
TGGACATTCTCACAATATATATAAAACTCTAAATTTGAAATAAGATTAATAGGAAATACCAGTG
TTTAAATAAGGAAAAAATGATCCTTATAGGGTTCATTGTGGTCACTTTAATATCAAAAATGTAT
GAAACAGAATTTTTTTTTAATACTACAGCATTAGTATTAAGGTGCAAAAATTTTCTGTTTTTAA
TGGAAAGAAATTTGAAGGGAGAAAGCAGATTAAGAAATACTCAAGACATTTGCAAGTTATGAAG
ATCTAAATATAACTACTAAATATTATAGTCCACTAAGAACATTTAAAAAGAGATAAAGGTCTTA
CCTACTATGGAGTGTTTTCTCAGAGGTCTCTTCACTCTTTGTAATGTCAGTTAATAAATACTAA
ACCCTTTGACAGAGGATGATAACCAGGAAAATGAGCATTTTTAGAATTTCAGTAGCTACTACAG
AAATGGAAATGCTATGAGTGGACCCAATCAGGCCCAACAGGTATATATGTGTCCTTTATTTGGG
ATTGGAACTAGACTCACCAGTGGTTAATTTTCCATTATTTGGTGTAGAAGTCTGGTTTCTCCGT
ATCATCGGTGAAGATGAAGATTATTTCTCAAAGAATTCACATTTCCAGTGTTTCTTTAATAAAA
CTATGCTTTTAAAGAAATAAAATTGTAAAATTTTTTAAAAATTTAGCCATGAAAAACAAATATT
TATATGACAATATCATATATATATATATGTCGTTCTCTTTGTATTTTAAATATATTGCTGCTGA
GAATATTGGGGACAGATTTGTCACTCAGAGCTTTGTACTAGTGGTGGCTTGATTCACAGCTTAT
CATTTCAGTCTTTCTTGGTTTTCATTAATCTTGAGAACCTTAAAATGGCTAACATGGCTATTAT
TCTAAACTTGGAGACATGAGCCTTCAAAAAAAGAGAAATACACTGTTCAAATTGATGCCAGGCC
TACCTTCCTTCCCTCCTTAATCATTCTTTTTCCTTCAGCTCAGATGATCTGCCCTTAAAAAATG
AAGTTTCCCCACCATCAAAACTTTTATTATTTAACAACGAAGATAACAGAAAAAACTTCGAGTA
GCTTTGTGAGTACTAGGTGATACCCAGCAAATTCAGGTCACTATTTTTATAATGCTTAAAACAT
ACCCTCATTTTATGTTTAACTACTGAAATCTGTTGCCGTGCAGCAATTGTGTGATTAATCCTAC
TGATTATAACTTAGTAATACCTATGGGTTTCTTCGTTGTTTGTTTTTTTAGGGCCACAACTGTC
CCACAGCATATGGAAGTTCCCATGCTAGGGGTCGCATTGGAGTTACAGCAGCTGACCTAAGCCA
CAGCCACAGCAACGTGGGATCCGAGCCACGTCTGTGACCTACACCACAGCTCACAGCAACACCG
GATCCTTAACCTACTGAGCAAGGCCAGAGATTGAACTTACATCCTCATCGATCCTAGTCAGGTT
CGTTATGCGCTGAGTCACGAAGGGAACTCCGTACCTGTGGCCTTTTGGCTCCTCTAGAACATTA
TCCAAAATGGAGGCAGAGTAATTAGTACATATCAAATACAGAAAAAGGTTTGTTAGCCCTCCAG
TAGATTGCTTATTGTAGTCTCCCTGTGCCATCACTCTGCTTTGAAAAACTATAACTTCATTTTT
TATAGCACAAATTGTCATCTTTCAATTCTGTGTAGCATGTGGGTATCCTGAAAAGGGTTATATA
TGTACAAACTGAGCAAAAAGGATTTCTCATTGTCTGTACGCTCTTATACATGCTTGATGGCCTG
TCAGCATTGTTGCCCACACTGTCTACATCTATATATATATACTATGATTAGAAAATATGCAAGA
GATTTTTTTTCATGTTGAGAGTGAACGCCATTAGAAGATGTCTTTAATGCATTGAGTCAGTGTT
CATAAGTCAAGGAAAACTCTTATTAGTTTCATTTTATGTTTTCACCTGGAAATGTGATAGAAGC
CAGTTTTTCCCTAAGTAGGGAACCAAAACCTGAATCAATCCAATTACATTTATCCATTTGTTTT
TGAATGCAATATAGTGCTTACATTTGTTTAGGAAATTGCCGCTAAGCAATGAGACACTGTCTGG
AGCTGAAAGGTGCCCTACTTACCAAGCCATCCACCGTGTTTCCCATGGCGTAGACAAATTCCTT
AGACTGATGTAGGGCTTCGGGCTTCTGTTTATGTTGGTCTTATTCTTTTTCTCAAGGTCAAGTA
GAATAAGGGATAGGTGACACAAATTGTGATTCTGGCTCCTATTTTATTTAAGAAGCTGCTTGGA
ACAAGTCAGTAGGAACTGAAAGGAAAGCATGACCGACTTGATTAAGGGGGACACATGTAAGCTT
GGCAAAGCACAGATCACATCATATTTGTGTCCCCACAGCACCCAGCATGATGCTCTGTACCTGG
CACTTGCTAGGTGAACATGCCTAGGAAATCACAAAGGCACCAAGTGTGCTCGTACCTAAGTGTG
CGTCAGCATCCGGGTCGTTACTGCAGGGATGACATGATTGACATAATACGGGGTCTACTGCATT
TACTGGGAGATAGCAGTGCTTCTTATAAAAATTGGGTAAAGAAAAATTCTGACATTATAGTACT
CCATTAGGTTATTTTCATTTGAAAAGTCTTAAAATCAAATAACCTATTAATTAAATACTTTAAG
GCTACAAAGTAAATTGCACAAATCAGATTTTAGTCAGTAACATGTCAGAAATCAAACTGTAAGA
AAGCTCAAGCATTTCGTTTTATGCCTGGGGTGTATGTCATTGTTTAAAATTCTACACTATTTAA
CCATTTTGATAAGTGCCTTTGATGTTTTTAAGGGGGATACGAGCAATGTAAATGATGTCCATCC
TGTACCTTTCCCAAGTCTTCGTAACCACTGTTATACCAGTGTTGCCTAGTCCTTAGTGTTCATA
CCAGATATTTATTTGTAGCCCCTCCATGGTAAATAGTAAAATAAACCATTTCATAGAAAATAAA
A

hide sequence

Protein Sequences


Protein RefSeqs	NP_001231636	(Get FASTA)	NCBI Sequence Viewer
	XP_005653776	(Get FASTA)	NCBI Sequence Viewer
	XP_013833079	(Get FASTA)	NCBI Sequence Viewer
	XP_020957683	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000046512.2
	ENSSSCP00005009632.1
	ENSSSCP00005009652.1
	ENSSSCP00005009660.1
	ENSSSCP00005009684.1
	ENSSSCP00005009702.1
	ENSSSCP00005009724.1
	ENSSSCP00015016985.1
	ENSSSCP00015017027.1
	ENSSSCP00015017073.1
	ENSSSCP00015017102.1
	ENSSSCP00025024670.1
	ENSSSCP00025024730.1
	ENSSSCP00025024804.1
	ENSSSCP00030020470.1
	ENSSSCP00030020492.1
	ENSSSCP00030020512.1
	ENSSSCP00035025846.1
	ENSSSCP00035025849.1
	ENSSSCP00035025852.1
	ENSSSCP00035025854.1
	ENSSSCP00040044653.1
	ENSSSCP00040044687.1
	ENSSSCP00045034815.1
	ENSSSCP00045034882.1
	ENSSSCP00045034951.1
	ENSSSCP00050039673.1
	ENSSSCP00050039675.1
	ENSSSCP00050039679.1
	ENSSSCP00055013398.1
	ENSSSCP00055013451.1
	ENSSSCP00055013486.1
	ENSSSCP00060008507.1
	ENSSSCP00060008509.1
	ENSSSCP00060008512.1
	ENSSSCP00065016434.1
	ENSSSCP00065016436.1
	ENSSSCP00065016437.1
	ENSSSCP00070028935.1
	ENSSSCP00070028938.1
	ENSSSCP00070028940.1
	ENSSSCP00070028943.1

RefSeq Acc Id:	XP_005653776 ⟸ XM_005653719
- Peptide Label:	isoform X2
- UniProtKB:	F1S7S9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPPKFKRHLNDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGPRFGPRNDKIKHVQNQVDEVI DVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKFL hide sequence

RefSeq Acc Id:	XP_020957683 ⟸ XM_021102024
- Peptide Label:	isoform X1
- UniProtKB:	A0A480C275 (UniProtKB/TrEMBL), A0A4X1ULC8 (UniProtKB/TrEMBL), A0A4X1UG17 (UniProtKB/TrEMBL), A0A8D1IGL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPPKFKRHLNDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGPRFGPRNDKIKHVQNQVDEVI DVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIKAIMALVAAILL LVIIILVVVKYHT hide sequence

RefSeq Acc Id:	XP_013833079 ⟸ XM_013977625
- Peptide Label:	isoform X1
- UniProtKB:	A0A480C275 (UniProtKB/TrEMBL), A0A4X1ULC8 (UniProtKB/TrEMBL), A0A4X1UG17 (UniProtKB/TrEMBL), A0A8D1IGL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPPKFKRHLNDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGPRFGPRNDKIKHVQNQVDEVI DVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIKAIMALVAAILL LVIIILVVVKYHT hide sequence

RefSeq Acc Id:	NP_001231636 ⟸ NM_001244707
- UniProtKB:	A0A480C275 (UniProtKB/TrEMBL), A0A4X1ULC8 (UniProtKB/TrEMBL), A0A4X1UG17 (UniProtKB/TrEMBL), A0A8D1IGL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPPKFKRHLNDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGPRFGPRNDKIKHVQNQVDEVI DVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIKAIMALVAAILL LVIIILVVVKYHT hide sequence

RefSeq Acc Id:

ENSSSCP00000016414 ⟸ ENSSSCT00000016865

RefSeq Acc Id:

ENSSSCP00000046512 ⟸ ENSSSCT00000038558

RefSeq Acc Id:

ENSSSCP00000032203 ⟸ ENSSSCT00000057061

Protein Domains

v-SNARE coiled-coil homology

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000015482	Ensembl, UniProtKB/TrEMBL
	ENSSSCG00005010494	UniProtKB/TrEMBL
	ENSSSCG00015032508	UniProtKB/TrEMBL
	ENSSSCG00025043030	UniProtKB/TrEMBL
	ENSSSCG00030032897	UniProtKB/TrEMBL
	ENSSSCG00035047928	UniProtKB/TrEMBL
	ENSSSCG00040072364	UniProtKB/TrEMBL
	ENSSSCG00045029350	UniProtKB/TrEMBL
	ENSSSCG00050067532	UniProtKB/TrEMBL
	ENSSSCG00055008691	UniProtKB/TrEMBL
	ENSSSCG00060015577	UniProtKB/TrEMBL
	ENSSSCG00065028813	UniProtKB/TrEMBL
	ENSSSCG00070017533	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000038558.3	UniProtKB/TrEMBL
	ENSSSCT00005016121.1	UniProtKB/TrEMBL
	ENSSSCT00005016159.1	UniProtKB/TrEMBL
	ENSSSCT00005016170.1	UniProtKB/TrEMBL
	ENSSSCT00005016213.1	UniProtKB/TrEMBL
	ENSSSCT00005016243.1	UniProtKB/TrEMBL
	ENSSSCT00005016285.1	UniProtKB/TrEMBL
	ENSSSCT00015042982.1	UniProtKB/TrEMBL
	ENSSSCT00015043093.1	UniProtKB/TrEMBL
	ENSSSCT00015043217.1	UniProtKB/TrEMBL
	ENSSSCT00015043286.1	UniProtKB/TrEMBL
	ENSSSCT00025058303.1	UniProtKB/TrEMBL
	ENSSSCT00025058426.1	UniProtKB/TrEMBL
	ENSSSCT00025058561.1	UniProtKB/TrEMBL
	ENSSSCT00030045492.1	UniProtKB/TrEMBL
	ENSSSCT00030045531.1	UniProtKB/TrEMBL
	ENSSSCT00030045568.1	UniProtKB/TrEMBL
	ENSSSCT00035063827.1	UniProtKB/TrEMBL
	ENSSSCT00035063832.1	UniProtKB/TrEMBL
	ENSSSCT00035063840.1	UniProtKB/TrEMBL
	ENSSSCT00035063845.1	UniProtKB/TrEMBL
	ENSSSCT00040099612.1	UniProtKB/TrEMBL
	ENSSSCT00040099663.1	UniProtKB/TrEMBL
	ENSSSCT00045050040.1	UniProtKB/TrEMBL
	ENSSSCT00045050132.1	UniProtKB/TrEMBL
	ENSSSCT00045050225.1	UniProtKB/TrEMBL
	ENSSSCT00050092107.1	UniProtKB/TrEMBL
	ENSSSCT00050092109.1	UniProtKB/TrEMBL
	ENSSSCT00050092114.1	UniProtKB/TrEMBL
	ENSSSCT00055016972.1	UniProtKB/TrEMBL
	ENSSSCT00055017036.1	UniProtKB/TrEMBL
	ENSSSCT00055017078.1	UniProtKB/TrEMBL
	ENSSSCT00060020728.1	UniProtKB/TrEMBL
	ENSSSCT00060020733.1	UniProtKB/TrEMBL
	ENSSSCT00060020736.1	UniProtKB/TrEMBL
	ENSSSCT00065038872.1	UniProtKB/TrEMBL
	ENSSSCT00065038875.1	UniProtKB/TrEMBL
	ENSSSCT00065038879.1	UniProtKB/TrEMBL
	ENSSSCT00070034639.1	UniProtKB/TrEMBL
	ENSSSCT00070034642.1	UniProtKB/TrEMBL
	ENSSSCT00070034644.1	UniProtKB/TrEMBL
	ENSSSCT00070034649.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.110	UniProtKB/TrEMBL
InterPro	Synaptobrevin	UniProtKB/TrEMBL
	V_SNARE_CC	UniProtKB/TrEMBL
	VAMP4	UniProtKB/TrEMBL
KEGG Report	ssc:100512732	UniProtKB/TrEMBL
NCBI Gene	VAMP4	ENTREZGENE
PANTHER	PTHR46897	UniProtKB/TrEMBL
	VESICLE-ASSOCIATED MEMBRANE PROTEIN 4	UniProtKB/TrEMBL
Pfam	Synaptobrevin	UniProtKB/TrEMBL
PRINTS	SYNAPTOBREVN	UniProtKB/TrEMBL
PROSITE	SYNAPTOBREVIN	UniProtKB/TrEMBL
	V_SNARE	UniProtKB/TrEMBL
Superfamily-SCOP	SNARE fusion complex	UniProtKB/TrEMBL
UniProt	A0A287ARM8_PIG	UniProtKB/TrEMBL
	A0A480C275	ENTREZGENE
	A0A4X1UG17	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1ULC8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0IG89_PIG	UniProtKB/TrEMBL
	A0A8D0S0Z4_PIG	UniProtKB/TrEMBL
	A0A8D0U175_PIG	UniProtKB/TrEMBL
	A0A8D1C622_PIG	UniProtKB/TrEMBL
	A0A8D1IGL0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1Q078_PIG	UniProtKB/TrEMBL
	A0A8D1Q845_PIG	UniProtKB/TrEMBL
	A0A8D1T4A4_PIG	UniProtKB/TrEMBL
	A0A8D1TN35_PIG	UniProtKB/TrEMBL
	F1S7S9	ENTREZGENE
UniProt Secondary	A0A480C275	UniProtKB/TrEMBL
VGNC ID	VGNC:94794	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar