CYP26B1 (cytochrome P450 family 26 subfamily B member 1) - Rat Genome Database

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Gene: CYP26B1 (cytochrome P450 family 26 subfamily B member 1) Sus scrofa
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Symbol: CYP26B1
Name: cytochrome P450 family 26 subfamily B member 1
RGD ID: 13902019
Description: ENCODES a protein that exhibits retinoic acid 4-hydroxylase activity (ortholog); INVOLVED IN cell fate determination (ortholog); cellular response to retinoic acid (ortholog); cornification (ortholog); PARTICIPATES IN retinoic acid metabolic pathway; ASSOCIATED WITH Craniosynostosis Syndrome, Autosomal Recessive (ortholog); esophagus squamous cell carcinoma (ortholog); mouth disease (ortholog); FOUND IN cytoplasm (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cytochrome P450 26B1; LOC100521659
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl370,572,197 - 70,593,408 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1370,573,551 - 70,593,416 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2373,914,357 - 73,934,214 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
membrane  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
CYP26B1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl370,572,197 - 70,593,408 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1370,573,551 - 70,593,416 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2373,914,357 - 73,934,214 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CYP26B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl272,129,238 - 72,147,862 (-)EnsemblGRCh38hg38GRCh38
GRCh38272,129,238 - 72,147,862 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37272,356,367 - 72,374,991 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36272,209,875 - 72,228,471 (-)NCBINCBI36hg18NCBI36
Build 34272,268,021 - 72,286,618NCBI
Celera272,206,377 - 72,224,974 (-)NCBI
Cytogenetic Map2p13.2NCBI
HuRef272,092,551 - 72,111,176 (-)NCBIHuRef
CHM1_1272,285,791 - 72,304,416 (-)NCBICHM1_1
Cyp26b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39684,548,396 - 84,570,890 (-)NCBIGRCm39mm39
GRCm39 Ensembl684,548,396 - 84,570,890 (-)Ensembl
GRCm38684,571,414 - 84,593,908 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl684,571,414 - 84,593,908 (-)EnsemblGRCm38mm10GRCm38
MGSCv37684,521,408 - 84,543,902 (-)NCBIGRCm37mm9NCBIm37
MGSCv36684,537,602 - 84,559,404 (-)NCBImm8
Celera686,552,442 - 86,574,953 (-)NCBICelera
Cytogenetic Map6C3NCBI
Cyp26b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24117,041,808 - 117,058,628 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl4117,041,808 - 117,058,628 (-)Ensembl
Rnor_6.04116,261,796 - 116,278,615 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4116,261,796 - 116,278,615 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04180,848,037 - 180,865,444 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44118,734,786 - 118,751,606 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14118,979,266 - 118,996,087 (-)NCBI
Celera4106,028,365 - 106,045,185 (-)NCBICelera
Cytogenetic Map4q34NCBI
LOC102023166
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542413,336,189 - 13,355,423 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542413,336,189 - 13,355,368 (+)NCBIChiLan1.0ChiLan1.0
CYP26B1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A73,667,847 - 73,686,433 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A73,670,830 - 73,686,433 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A72,172,658 - 72,191,410 (-)NCBIMhudiblu_PPA_v0panPan3
CYP26B1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11750,633,397 - 50,653,882 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1750,633,413 - 50,653,894 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1750,280,509 - 50,301,422 (+)NCBI
ROS_Cfam_1.01751,501,857 - 51,522,773 (+)NCBI
UMICH_Zoey_3.11750,510,776 - 50,531,647 (+)NCBI
UNSW_CanFamBas_1.01750,576,538 - 50,597,422 (+)NCBI
UU_Cfam_GSD_1.01751,150,622 - 51,171,524 (+)NCBI
LOC101975674
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629212,541,815 - 12,561,209 (+)NCBI
SpeTri2.0NW_00493649116,010,394 - 16,028,852 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYP26B1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11435,030,011 - 35,057,164 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1435,038,654 - 35,057,176 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604577,009,329 - 77,029,165 (-)NCBIVero_WHO_p1.0
LOC101714280
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247621,455,828 - 1,474,201 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system renal system reproductive system respiratory system
High
Medium
Low 5 1 1 12 3 1
Below cutoff 4 4 2 4 8 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000009102   ⟹   ENSSSCP00000008873
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl370,572,197 - 70,593,408 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000058428   ⟹   ENSSSCP00000035264
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl370,574,324 - 70,593,408 (+)Ensembl
RefSeq Acc Id: XM_003125033   ⟹   XP_003125081
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1370,573,551 - 70,593,416 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003125081 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003125081   ⟸   XM_003125033
- UniProtKB: F1SLE8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000008873   ⟸   ENSSSCT00000009102
RefSeq Acc Id: ENSSSCP00000035264   ⟸   ENSSSCT00000058428


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000008311 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070029484 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000008873 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000035264 UniProtKB/TrEMBL
  ENSSSCP00070050449 UniProtKB/TrEMBL
  ENSSSCP00070050456 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000009102 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000058428 UniProtKB/TrEMBL
  ENSSSCT00070059252 UniProtKB/TrEMBL
  ENSSSCT00070059259 UniProtKB/TrEMBL
Gene3D-CATH 1.10.630.10 UniProtKB/TrEMBL
InterPro Cyt_P450 UniProtKB/TrEMBL
  Cyt_P450_CS UniProtKB/TrEMBL
  Cyt_P450_E_grp-IV UniProtKB/TrEMBL
  Cyt_P450_sf UniProtKB/TrEMBL
KEGG Report ssc:100521659 UniProtKB/TrEMBL
NCBI Gene LOC100521659 ENTREZGENE
Pfam p450 UniProtKB/TrEMBL
PRINTS EP450IV UniProtKB/TrEMBL
  P450 UniProtKB/TrEMBL
PROSITE CYTOCHROME_P450 UniProtKB/TrEMBL
Superfamily-SCOP SSF48264 UniProtKB/TrEMBL
UniProt A0A286ZUJ7_PIG UniProtKB/TrEMBL
  A0A4X1W8J5_PIG UniProtKB/TrEMBL
  F1SLE8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:103374 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-21 CYP26B1  cytochrome P450 family 26 subfamily B member 1  LOC100521659  cytochrome P450 26B1  Symbol and/or name change 19259463 PROVISIONAL