FAM117A (family with sequence similarity 117 member A)

Gene: FAM117A (family with sequence similarity 117 member A) Sus scrofa

Analyze

Symbol:

FAM117A

Name:

family with sequence similarity 117 member A

RGD ID:

13901933

Description:

ASSOCIATED WITH genetic disease (ortholog); trichodontoosseous syndrome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

protein FAM117A

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	25,890,775 - 25,945,442 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	25,890,871 - 25,945,436 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	25,897,505 - 25,951,892 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

trichodontoosseous syndrome (ISO)

References

Genomics

Comparative Map Data

FAM117A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	25,890,775 - 25,945,442 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	25,890,871 - 25,945,436 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	25,897,505 - 25,951,892 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FAM117A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	49,710,332 - 49,789,110 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	49,710,332 - 49,789,180 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	47,787,694 - 47,841,493 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	45,142,686 - 45,196,517 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	44,242,675 - 44,296,502 (-)	NCBI		Celera
Cytogenetic Map	17	q21.33	NCBI
HuRef	17	43,152,687 - 43,206,551 (-)	NCBI		HuRef
CHM1_1	17	47,852,701 - 47,905,467 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	50,573,432 - 50,652,200 (-)	NCBI		T2T-CHM13v2.0

Fam117a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	95,227,844 - 95,272,698 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	95,227,844 - 95,272,698 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	95,337,018 - 95,381,872 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	95,337,018 - 95,381,872 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	95,198,332 - 95,243,186 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	95,153,108 - 95,197,960 (+)	NCBI		MGSCv36	mm8
Celera	11	104,958,729 - 105,005,810 (+)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	59.01	NCBI

Fam117a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	80,778,229 - 80,822,119 (+)	NCBI		GRCr8
mRatBN7.2	10	80,281,411 - 80,325,345 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	80,281,408 - 80,325,343 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	85,229,563 - 85,273,798 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	84,727,620 - 84,771,843 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	80,120,191 - 80,163,994 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	83,154,800 - 83,198,679 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	83,154,423 - 83,198,679 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	82,964,187 - 83,008,066 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	84,022,262 - 84,067,048 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	79,053,730 - 79,097,433 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

Fam117a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	11,824,773 - 11,868,387 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	11,825,081 - 11,868,387 (+)	NCBI	ChiLan1.0	ChiLan1.0

FAM117A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	65,895,154 - 65,973,582 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	70,701,702 - 70,780,147 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	43,797,399 - 43,851,382 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	48,527,231 - 48,580,906 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	48,528,161 - 48,580,886 (-)	Ensembl	panpan1.1		panPan2

FAM117A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	25,778,612 - 25,821,517 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	25,778,597 - 25,821,491 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	25,236,454 - 25,279,362 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	26,573,273 - 26,616,202 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	26,573,478 - 26,616,177 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	25,341,180 - 25,384,012 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	25,600,148 - 25,643,000 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	25,729,470 - 25,772,378 (-)	NCBI		UU_Cfam_GSD_1.0

Fam117a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	25,205,792 - 25,269,852 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	11,824,547 - 11,869,349 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	11,824,577 - 11,869,347 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAM117A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	70,104,910 - 70,158,716 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	70,105,840 - 70,158,652 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	41,213,734 - 41,267,566 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fam117a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	5,795,281 - 5,839,573 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624795	5,795,281 - 5,839,606 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in FAM117A
2046 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium
Low	9	4	3	5	2	20	2	3	3
Below cutoff	1					3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003358095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK397026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01038098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000019105 ⟹ ENSSSCP00000018599

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	12	25,890,775 - 25,945,442 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000088902 ⟹ ENSSSCP00000067598

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	12	25,890,777 - 25,902,372 (-)	Ensembl

RefSeq Acc Id:

XM_003358095 ⟹ XP_003358143

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	25,890,871 - 25,945,436 (-)	NCBI

Sequence:

show sequence

GGTTCGCTGTGAGGCGGAGGCAGGCAAGCGGTCGGGCGGGCGGGCGGGTGATGGCGGGGGCCGC
AGCGGGCGGCCGAGGCGGAGGTGCCTGGGGGCCGGGGCGTGGAGGGTCCGGGGGGCTCCGGCGT
GGCTGCTCTCCCCCAGCCCCCGCCGGCTCCCCCAGGGCTGGGCTTCAGCCGCTCAGGGCCACAG
TCCCTTTCCAGCTGCAGCAGCCGCACCAGCGCCGGGACGGGGGTGGCCGCGCAGCCAGCGTCCC
GTGTTCTGTGGCCCCTGAAAAGCCAGTGTGCAGGCCTCAGCCGCCCCAGGTCCGACGTACCTTC
TCCTTGGACACCATCCTCAGCTCCTACCTTCTGGGCCAGTGGCCACGAGATGCTGATGGGGCCT
TCACCTGCTGTACCAATGACAAGGCCACCCAGACCCCCCTGTCCTGGCAAGAGCTTGAAGGTGA
GCGCTCCAGCTCCTGCACACACAAGCGCTCAGCGTCCTGGGGCAGCACAGACCACCGAAAAGAG
ATCACCAAGTTGAAGCAACAGCTGCAGCGGACAAAGCTGAGCCGCAGTGGGAAGGAGAAGGAAC
GGGGCTCCCCCCTCCAAGGGGACCATGCTGTGCGGGGAGCGCTGATGGCGTCCCCTCCCAGCTT
CCCCTCAGGGTCCCCTGTCCTGCGACTCAGCCCCTGCCTGCACCGGAGCCTGGAAGGGCTCAAC
CAAGAGCTGGAGGAGGTGTTTGTGAAGGAGCAGGGCGAAGAGGAGCTGCTGCGGATCCTTGAAA
TCCCTGACGGGCACCGCGCCCCGGCTCCCCCCCAGAGCGGCAGCTGTGACCATCCCCTCCTCCT
CCTGGAGCCTGGAAACCTTGCCAGCTCTCCCTCCATGCCCCTGGCATCCCCCCAGCCTTCTGGC
CAGACCAGCCGTGAGGAACACCGGGGTGCCACTGAGGAGCTGGCATCCATCCCCACCGACAAAG
CTTCCTCTCCAGGCCACCCCGCCTTCCTTGAAGATGGCAGCCCATCTCCAGTCCTTGCCTTTGC
CGCCTCCCCGCGGCCCAATCACAGCTACGTCTTCAAACGGGAGCCCCCAGAAGGCTGTGAGAGA
GTGCGGGTGTTTGAAGAGGCCACGTCCCCAGGTCCCGACCTGGCCTTCCTGACTTCCTGTCCTG
ACAAGAACAAAGTCCATTTCAACCCGACCGGCTCGGCCTTCTGCCCTGTCAGCCTGATGAAGCC
CCTCTTCCCCAGCATGGGCTTCATCTTCCGTAACTGCCCCTCGAGCCCGGGGTCCCCCCTCCCC
CCTGCCAGCCCCAGACCACCGGCTCGGAAGGATCCAGAGGCCTCCAAGGCTTCCTCGCTGCCCT
TTGAGCCGTGGCAGCGCAGCCCGCCGTCGGAAGAGCCCGTGCTCTTCCAGAGCTCGCTGGTGGT
CTGAGGCCCCCACCCCCACTTGACCATGGAGACCAGTGCCTTGGTGGCAGGCCCTTCCCTAGCT
CCCCTGAGATGGGGGACGAAGGAGCCCTTCCCTCTCGGCCTTCGAGCACTTTCATTTATTGTGT
CAAAGCCCTGGGTCCTCTTTCTCGTGGACACCAGCCCCTCCGCGTGTGAGGGGACCTGCCTTCT
CCACTAGCAGCTGGGCAGCTCACAAGTCACACCTGTGTTCTTGCCACCTCTCTCACTGGGTGGA
AAAACGCACCCCGAAGGCCTCGGGTCCCCCACCCCTGGGTCTGAGTCCAAGTGACTGCGTCCGG
GGCCCTTGTCTTTATCATGGAGCAAGCTGGCCATGATGGAAGGAGGGGGGACCCCCCCACACAC
ATTTCCTTGCCTCTCCTCCCCAGACACAGCAGGGGGGACCGGAAGGCAGATACCCCGTCCTCTC
AGCCCCCAGCCCCACGCCTCCCTCTCATTGGAGGAGCTGACCAAAGCAGCCCTAAAGGGCCAGA
ACACTTGACCAATCCAGCTGCTGGCAGAGGGGGAACCAAGCGTTTTTCCTAAGTGGCATTTTCA
TCTCGCTTTCACCCTACAATTGTCTTAAGCAGCAGCCCAGCCTGCCCAGCCCCAGGTGGGTCTT
GGGGGAGGGGGAGAGCTGGCATTCCTCCAGGTGGCAAGTGGCGACTCTCGACCCTCCACCTGCC
CCAGGACTGGGTTGGATTAGAAAAATGCCTATTTTTCTTGTATCGATGTAGAAACTCTATTTTC
TCCCAAAGACACTATTTTTGCAGCTGTTTGAAGTTTGTATATTTTCCGTACTGCAGAGCTTACA
CAAAATTGAAGAAGAATGTTGATGTTCAGGTTTTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003358143	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000018599
	ENSSSCP00000018599.1
	ENSSSCP00000067598.2
	ENSSSCP00015033646.1
	ENSSSCP00025046127.1
	ENSSSCP00030007552.1
	ENSSSCP00035013792.1
	ENSSSCP00035013795.1
	ENSSSCP00040023271.1
	ENSSSCP00045032236.1
	ENSSSCP00055030606.1
	ENSSSCP00060004037.1
	ENSSSCP00060004039.1
	ENSSSCP00065025294.1
	ENSSSCP00070031307.1

RefSeq Acc Id:

XP_003358143 ⟸ XM_003358095

- UniProtKB:

F1RVT4 (UniProtKB/TrEMBL), A0A8D0VMA2 (UniProtKB/TrEMBL), A0A4X1URX1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAGAAAGGRGGGAWGPGRGGSGGLRRGCSPPAPAGSPRAGLQPLRATVPFQLQQPHQRRDGGGR
AASVPCSVAPEKPVCRPQPPQVRRTFSLDTILSSYLLGQWPRDADGAFTCCTNDKATQTPLSWQ
ELEGERSSSCTHKRSASWGSTDHRKEITKLKQQLQRTKLSRSGKEKERGSPLQGDHAVRGALMA
SPPSFPSGSPVLRLSPCLHRSLEGLNQELEEVFVKEQGEEELLRILEIPDGHRAPAPPQSGSCD
HPLLLLEPGNLASSPSMPLASPQPSGQTSREEHRGATEELASIPTDKASSPGHPAFLEDGSPSP
VLAFAASPRPNHSYVFKREPPEGCERVRVFEEATSPGPDLAFLTSCPDKNKVHFNPTGSAFCPV
SLMKPLFPSMGFIFRNCPSSPGSPLPPASPRPPARKDPEASKASSLPFEPWQRSPPSEEPVLFQ
SSLVV

hide sequence

RefSeq Acc Id:

ENSSSCP00000067598 ⟸ ENSSSCT00000088902

RefSeq Acc Id:

ENSSSCP00000018599 ⟸ ENSSSCT00000019105

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000017551	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015062267	UniProtKB/TrEMBL
	ENSSSCG00025075388	UniProtKB/TrEMBL
	ENSSSCG00030012259	UniProtKB/TrEMBL
	ENSSSCG00035026402	UniProtKB/TrEMBL
	ENSSSCG00040041892	UniProtKB/TrEMBL
	ENSSSCG00045027286	UniProtKB/TrEMBL
	ENSSSCG00055019670	UniProtKB/TrEMBL
	ENSSSCG00060008537	UniProtKB/TrEMBL
	ENSSSCG00065042688	UniProtKB/TrEMBL
	ENSSSCG00070018970	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000019105	ENTREZGENE
	ENSSSCT00000019105.4	UniProtKB/TrEMBL
	ENSSSCT00000088902.2	UniProtKB/TrEMBL
	ENSSSCT00015083153.1	UniProtKB/TrEMBL
	ENSSSCT00025103967.1	UniProtKB/TrEMBL
	ENSSSCT00030016839.1	UniProtKB/TrEMBL
	ENSSSCT00035034821.1	UniProtKB/TrEMBL
	ENSSSCT00035034826.1	UniProtKB/TrEMBL
	ENSSSCT00040055978.1	UniProtKB/TrEMBL
	ENSSSCT00045046448.1	UniProtKB/TrEMBL
	ENSSSCT00055038517.1	UniProtKB/TrEMBL
	ENSSSCT00060010936.1	UniProtKB/TrEMBL
	ENSSSCT00060010938.1	UniProtKB/TrEMBL
	ENSSSCT00065058359.1	UniProtKB/TrEMBL
	ENSSSCT00070037439.1	UniProtKB/TrEMBL
InterPro	Glcci1/FAM117	UniProtKB/TrEMBL
KEGG Report	ssc:100623099	UniProtKB/TrEMBL
NCBI Gene	FAM117A	ENTREZGENE
PANTHER	PROTEIN FAM117A	UniProtKB/TrEMBL
	PTHR14972	UniProtKB/TrEMBL
Pfam	FAM117	UniProtKB/TrEMBL
UniProt	A0A4X1URX1	ENTREZGENE, UniProtKB/TrEMBL
	A0A5G2RAG1_PIG	UniProtKB/TrEMBL
	A0A8D0TFQ1_PIG	UniProtKB/TrEMBL
	A0A8D0VMA2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1R8S7_PIG	UniProtKB/TrEMBL
	F1RVT4	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:87892	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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