GLI2 (GLI family zinc finger 2) - Rat Genome Database

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Gene: GLI2 (GLI family zinc finger 2) Sus scrofa
Analyze
Symbol: GLI2
Name: GLI family zinc finger 2
RGD ID: 13900403
Description: ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); zinc ion binding (ortholog); INVOLVED IN anatomical structure formation involved in morphogenesis (ortholog); anterior/posterior pattern specification (ortholog); axon guidance (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); Animal Disease Models (ortholog); Anorectal Malformations (ortholog); FOUND IN axoneme (inferred); ciliary tip (inferred); cilium (inferred); INTERACTS WITH dibromine; zearalenone
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: zinc finger protein GLI2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1530,313,817 - 30,579,306 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11530,312,528 - 30,580,272 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21535,267,097 - 35,303,278 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
dibromine  (EXP)
zearalenone  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
anatomical structure formation involved in morphogenesis  (IEA,ISO)
anterior/posterior pattern specification  (IEA,ISO)
axon guidance  (IEA,ISO)
branching morphogenesis of an epithelial tube  (IEA,ISO)
cell differentiation  (IEA,ISO)
cell population proliferation  (IEA,ISO)
cellular response to organic cyclic compound  (IEA,ISO)
cellular response to virus  (ISO)
cerebellar cortex morphogenesis  (IEA,ISO)
chondrocyte differentiation  (IEA,ISO)
cochlea morphogenesis  (IEA,ISO)
developmental growth  (IEA,ISO)
dorsal/ventral neural tube patterning  (IEA,ISO)
dorsal/ventral pattern formation  (IEA,ISO)
embryonic digestive tract development  (IEA,ISO)
embryonic digit morphogenesis  (IEA,ISO)
epidermal cell differentiation  (ISO)
epithelial cell proliferation  (IEA,ISO)
floor plate formation  (IEA,ISO)
gene expression  (IEA,ISO)
hair follicle morphogenesis  (ISO)
head development  (IEA,ISO)
heart development  (IEA,ISO)
hindbrain development  (IEA,ISO)
hindgut morphogenesis  (IEA,ISO)
in utero embryonic development  (IEA,ISO)
kidney development  (IEA,ISO)
lung development  (IEA,ISO)
mammary gland development  (IEA,ISO)
mammary gland duct morphogenesis  (IEA,ISO)
morphogenesis of an epithelium  (IEA,ISO)
negative regulation of apoptotic process  (IEA,ISO)
negative regulation of chondrocyte differentiation  (IEA,ISO)
negative regulation of smoothened signaling pathway  (IEA,ISO)
negative regulation of transcription by RNA polymerase II  (IEA,ISO)
neural tube development  (IEA,ISO)
neuron development  (IEA,ISO)
neuron differentiation  (IEA,ISO)
notochord regression  (IEA,ISO)
odontogenesis of dentin-containing tooth  (IEA,ISO)
osteoblast development  (IEA,ISO)
osteoblast differentiation  (IEA,ISO)
pattern specification process  (IEA,ISO)
pituitary gland development  (IEA,ISO)
positive regulation of cell population proliferation  (IEA,ISO)
positive regulation of collagen biosynthetic process  (ISO)
positive regulation of DNA replication  (ISO)
positive regulation of DNA-templated transcription  (IEA,ISO)
positive regulation of epithelial cell proliferation  (IEA,ISO)
positive regulation of neuron differentiation  (IEA,ISO)
positive regulation of stem cell proliferation  (IEA,ISO)
positive regulation of transcription by RNA polymerase II  (IEA,ISO)
prostate gland development  (ISO)
prostatic bud formation  (IEA,ISO)
proximal/distal pattern formation  (IEA,ISO)
regulation of smoothened signaling pathway  (IEA,ISO)
regulation of transcription by RNA polymerase II  (IBA,IEA)
response to mechanical stimulus  (ISO)
skeletal system development  (IEA,ISO)
smoothened signaling pathway  (IBA,IEA,ISO)
smoothened signaling pathway involved in dorsal/ventral neural tube patterning  (IEA,ISO)
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification  (IEA,ISO)
smoothened signaling pathway involved in ventral spinal cord interneuron specification  (IEA,ISO)
spinal cord dorsal/ventral patterning  (IEA,ISO)
spinal cord motor neuron differentiation  (IEA,ISO)
spinal cord ventral commissure morphogenesis  (IEA,ISO)
stem cell proliferation  (IEA,ISO)
tube development  (IEA,ISO)
ventral midline development  (IEA,ISO)
ventral spinal cord development  (IEA,ISO)

Cellular Component
axoneme  (IEA)
ciliary tip  (IEA)
cilium  (IEA)
cytoplasm  (IEA)
membrane  (IEA)
motile cilium  (IEA)
nuclear speck  (IEA)
nucleolus  (IEA)
nucleoplasm  (IEA)
nucleus  (IBA,IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:24213835   PMID:30032202  


Genomics

Comparative Map Data
GLI2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1530,313,817 - 30,579,306 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11530,312,528 - 30,580,272 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21535,267,097 - 35,303,278 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GLI2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382120,735,868 - 120,992,653 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2120,735,623 - 120,992,653 (+)EnsemblGRCh38hg38GRCh38
GRCh372121,493,444 - 121,750,229 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362121,266,327 - 121,466,321 (+)NCBINCBI36Build 36hg18NCBI36
Celera2114,879,848 - 115,075,199 (+)NCBICelera
Cytogenetic Map2q14.2NCBI
HuRef2113,876,969 - 114,072,693 (+)NCBIHuRef
CHM1_12121,559,011 - 121,754,271 (+)NCBICHM1_1
T2T-CHM13v2.02121,171,586 - 121,428,571 (+)NCBIT2T-CHM13v2.0
Gli2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391118,761,791 - 118,987,578 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1118,761,862 - 118,981,349 (-)EnsemblGRCm39 Ensembl
GRCm381118,834,061 - 119,054,405 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1118,834,132 - 119,053,619 (-)EnsemblGRCm38mm10GRCm38
MGSCv371120,730,638 - 120,950,196 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361120,661,607 - 120,881,165 (-)NCBIMGSCv36mm8
Celera1121,494,112 - 121,713,823 (-)NCBICelera
Cytogenetic Map1E2.3NCBI
cM Map152.17NCBI
Gli2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81332,499,678 - 32,716,418 (-)NCBIGRCr8
mRatBN7.21329,946,882 - 30,163,589 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1329,946,809 - 30,163,574 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1332,529,564 - 32,585,620 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01333,817,400 - 33,873,458 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01331,093,715 - 31,149,850 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01334,829,021 - 35,049,172 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1334,829,139 - 35,048,444 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01339,955,094 - 40,170,750 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41331,551,089 - 31,607,264 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11331,555,563 - 31,574,381 (-)NCBI
Celera1329,844,054 - 29,900,050 (-)NCBICelera
Cytogenetic Map13q11NCBI
Gli2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554598,892,869 - 9,118,499 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554598,892,917 - 9,124,672 (-)NCBIChiLan1.0ChiLan1.0
GLI2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21322,735,243 - 22,992,365 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B22,750,199 - 23,007,333 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B7,665,403 - 7,922,840 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B121,242,932 - 121,499,411 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B121,303,831 - 121,497,442 (+)Ensemblpanpan1.1panPan2
GLI2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11929,128,401 - 29,383,324 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1929,130,227 - 29,383,658 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1929,385,203 - 29,640,495 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01930,500,404 - 30,754,986 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1930,501,230 - 30,755,556 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11929,191,227 - 29,444,875 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01929,361,839 - 29,547,733 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01930,542,746 - 30,798,466 (-)NCBIUU_Cfam_GSD_1.0
Gli2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530391,769,648 - 92,002,404 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646949,617,095 - 49,673,213 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646949,616,552 - 49,788,760 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLI2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1109,302,890 - 9,561,287 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl109,304,645 - 9,369,115 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606113,127,973 - 13,388,785 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gli2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473224,159,312 - 24,328,452 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473224,159,407 - 24,381,495 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GLI2
12430 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 2 1 1 1 1
Below cutoff 7 3 3 3 1 16 2 2 1

Sequence


RefSeq Acc Id: ENSSSCT00000017133   ⟹   ENSSSCP00000016673
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1530,313,817 - 30,579,306 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000103133   ⟹   ENSSSCP00000080450
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1530,314,624 - 30,579,306 (-)Ensembl
RefSeq Acc Id: NM_001315712   ⟹   NP_001302641
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11530,312,534 - 30,579,265 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005671643   ⟹   XP_005671700
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11530,312,528 - 30,509,718 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021074615   ⟹   XP_020930274
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11530,312,543 - 30,580,272 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021074616   ⟹   XP_020930275
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11530,314,621 - 30,485,930 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005671700   ⟸   XM_005671643
- Peptide Label: isoform X1
- UniProtKB: F1RXX4 (UniProtKB/TrEMBL),   A0A068A0B0 (UniProtKB/TrEMBL),   A0A8D0QV02 (UniProtKB/TrEMBL),   A0A480W7Y7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001302641   ⟸   NM_001315712
- UniProtKB: F1RXX4 (UniProtKB/TrEMBL),   A0A068A0B0 (UniProtKB/TrEMBL),   A0A8D0QV02 (UniProtKB/TrEMBL),   A0A480W7Y7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020930274   ⟸   XM_021074615
- Peptide Label: isoform X1
- UniProtKB: A0A068A0B0 (UniProtKB/TrEMBL),   A0A8D0QV02 (UniProtKB/TrEMBL),   F1RXX4 (UniProtKB/TrEMBL),   A0A480W7Y7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020930275   ⟸   XM_021074616
- Peptide Label: isoform X2
- UniProtKB: A0A8D1H727 (UniProtKB/TrEMBL),   A0A480W7Y7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000016673   ⟸   ENSSSCT00000017133
RefSeq Acc Id: ENSSSCP00000080450   ⟸   ENSSSCT00000103133
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015733 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025007284 UniProtKB/TrEMBL
  ENSSSCG00040028452 UniProtKB/TrEMBL
  ENSSSCG00045012484 UniProtKB/TrEMBL
  ENSSSCG00050000394 UniProtKB/TrEMBL
  ENSSSCG00060068433 UniProtKB/TrEMBL
  ENSSSCG00070000409 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000017133 ENTREZGENE
  ENSSSCT00000017133.4 UniProtKB/TrEMBL
  ENSSSCT00000103133.1 UniProtKB/TrEMBL
  ENSSSCT00025009693.1 UniProtKB/TrEMBL
  ENSSSCT00040038282.1 UniProtKB/TrEMBL
  ENSSSCT00045021343.1 UniProtKB/TrEMBL
  ENSSSCT00045021356.1 UniProtKB/TrEMBL
  ENSSSCT00050000433.1 UniProtKB/TrEMBL
  ENSSSCT00060093405.1 UniProtKB/TrEMBL
  ENSSSCT00070000768.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro GLI-like UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report ssc:100520334 UniProtKB/TrEMBL
NCBI Gene GLI2 ENTREZGENE
PANTHER PTHR45718 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN GLI2 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A068A0B0 ENTREZGENE
  A0A480W7Y7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SES3_PIG UniProtKB/TrEMBL
  A0A8D0QV02 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1E4J0_PIG UniProtKB/TrEMBL
  A0A8D1H6K2_PIG UniProtKB/TrEMBL
  A0A8D1H727 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FM76_PIG UniProtKB/TrEMBL
  F1RXX4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A068A0B0 UniProtKB/TrEMBL
VGNC ID VGNC:96324 ENTREZGENE