FSD1L (fibronectin type III and SPRY domain containing 1 like) - Rat Genome Database
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Gene: FSD1L (fibronectin type III and SPRY domain containing 1 like) Sus scrofa
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Symbol: FSD1L
Name: fibronectin type III and SPRY domain containing 1 like
RGD ID: 13899291
Description: ASSOCIATED WITH Walker-Warburg syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: FSD1-like protein; FSD1-like protein-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1246,768,150 - 246,916,650 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11246,768,098 - 246,847,084 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21276,459,492 - 276,540,869 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
FSD1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1246,768,150 - 246,916,650 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11246,768,098 - 246,847,084 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21276,459,492 - 276,540,869 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FSD1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9105,447,796 - 105,552,433 (+)EnsemblGRCh38hg38GRCh38
GRCh389105,442,183 - 105,552,433 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh379108,210,315 - 108,314,714 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369107,250,146 - 107,351,206 (+)NCBINCBI36hg18NCBI36
Build 349105,290,006 - 105,313,976NCBI
Celera978,715,679 - 78,816,545 (+)NCBI
Cytogenetic Map9q31.2NCBI
HuRef977,811,705 - 77,912,804 (+)NCBIHuRef
CHM1_19108,357,299 - 108,461,695 (+)NCBICHM1_1
Fsd1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39453,631,383 - 53,707,009 (+)NCBIGRCm39mm39
GRCm39 Ensembl453,631,471 - 53,707,009 (+)Ensembl
GRCm38453,631,383 - 53,707,009 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl453,631,471 - 53,707,009 (+)EnsemblGRCm38mm10GRCm38
MGSCv37453,644,427 - 53,664,491 (+)NCBIGRCm37mm9NCBIm37
MGSCv36453,652,603 - 53,672,890 (+)NCBImm8
Celera453,592,477 - 53,612,542 (+)NCBICelera
Cytogenetic Map4B2NCBI
Fsd1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2568,258,877 - 68,334,931 (+)NCBI
Rnor_6.0 Ensembl570,441,123 - 70,511,659 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0570,441,075 - 70,517,131 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0574,598,681 - 74,692,987 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4571,086,200 - 71,144,622 (+)NCBIRGSC3.4rn4RGSC3.4
Celera567,153,184 - 67,229,209 (+)NCBICelera
Cytogenetic Map5q24NCBI
Fsd1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541921,003,234 - 21,068,643 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541921,003,234 - 21,076,163 (-)NCBIChiLan1.0ChiLan1.0
FSD1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19104,747,122 - 104,843,758 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9104,761,018 - 104,837,806 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0976,619,595 - 76,717,372 (+)NCBIMhudiblu_PPA_v0panPan3
FSD1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1161,316,148 - 61,388,368 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11161,316,132 - 61,389,205 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Fsd1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365596,684,014 - 6,760,237 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FSD1L
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11233,973,416 - 34,059,379 (-)NCBI
ChlSab1.1 Ensembl1233,976,030 - 34,058,808 (-)Ensembl
Fsd1l
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247585,887,509 - 5,956,480 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 3 22
Low 2 4 5 2 1 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000005969   ⟹   ENSSSCP00000005821
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1246,786,207 - 246,844,829 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000005970   ⟹   ENSSSCP00000005822
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1246,768,206 - 246,916,647 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000038218   ⟹   ENSSSCP00000040631
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1246,768,150 - 246,916,650 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000044406   ⟹   ENSSSCP00000042704
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1246,785,741 - 246,849,033 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000047525   ⟹   ENSSSCP00000042220
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1246,768,150 - 246,916,650 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000047610   ⟹   ENSSSCP00000055472
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1246,768,150 - 246,916,650 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000051125   ⟹   ENSSSCP00000054939
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1246,768,176 - 246,844,863 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000052340   ⟹   ENSSSCP00000044140
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1246,785,741 - 246,843,905 (+)Ensembl
RefSeq Acc Id: XM_003480570   ⟹   XP_003480618
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11246,768,098 - 246,844,910 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005660313   ⟹   XP_005660370
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11246,768,147 - 246,847,084 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005660314   ⟹   XP_005660371
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11246,768,147 - 246,844,896 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003480618 (Get FASTA)   NCBI Sequence Viewer  
  XP_005660370 (Get FASTA)   NCBI Sequence Viewer  
  XP_005660371 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003480618   ⟸   XM_003480570
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005660370   ⟸   XM_005660313
- Peptide Label: isoform X1
- UniProtKB: A0A287AFN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005660371   ⟸   XM_005660314
- Peptide Label: isoform X2
- UniProtKB: A0A287AJF2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000005821   ⟸   ENSSSCT00000005969
RefSeq Acc Id: ENSSSCP00000005822   ⟸   ENSSSCT00000005970
RefSeq Acc Id: ENSSSCP00000042704   ⟸   ENSSSCT00000044406
RefSeq Acc Id: ENSSSCP00000054939   ⟸   ENSSSCT00000051125
RefSeq Acc Id: ENSSSCP00000044140   ⟸   ENSSSCT00000052340
RefSeq Acc Id: ENSSSCP00000040631   ⟸   ENSSSCT00000038218
RefSeq Acc Id: ENSSSCP00000042220   ⟸   ENSSSCT00000047525
RefSeq Acc Id: ENSSSCP00000055472   ⟸   ENSSSCT00000047610
Protein Domains
B30.2/SPRY   COS   Fibronectin type-III


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000005426 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000005821 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000005822 UniProtKB/TrEMBL
  ENSSSCP00000040631 UniProtKB/TrEMBL
  ENSSSCP00000042220 UniProtKB/TrEMBL
  ENSSSCP00000042704 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000044140 UniProtKB/TrEMBL
  ENSSSCP00000054939 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000055472 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005969 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000005970 UniProtKB/TrEMBL
  ENSSSCT00000038218 UniProtKB/TrEMBL
  ENSSSCT00000044406 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000047525 UniProtKB/TrEMBL
  ENSSSCT00000047610 UniProtKB/TrEMBL
  ENSSSCT00000051125 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000052340 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  Bbox_C UniProtKB/TrEMBL
  Butyrophylin_SPRY UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  COS_domain UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  SPRY/PRY_FSD1 UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
NCBI Gene FSD1L ENTREZGENE
Pfam fn3 UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
PRINTS BUTYPHLNCDUF UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  COS UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
SMART BBC UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt A0A287A9Y4_PIG UniProtKB/TrEMBL
  A0A287AEH5_PIG UniProtKB/TrEMBL
  A0A287AFN3 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AJF2 ENTREZGENE, UniProtKB/TrEMBL
  A0A287BEG6_PIG UniProtKB/TrEMBL
  A0A287BHD3_PIG UniProtKB/TrEMBL
  A0A480ETQ2_PIG UniProtKB/TrEMBL
  F1SP51_PIG UniProtKB/TrEMBL
  F1SP52_PIG UniProtKB/TrEMBL
VGNC ID VGNC:88252 ENTREZGENE