FSD1L (fibronectin type III and SPRY domain containing 1 like) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: FSD1L (fibronectin type III and SPRY domain containing 1 like) Sus scrofa
Analyze
Symbol: FSD1L
Name: fibronectin type III and SPRY domain containing 1 like
RGD ID: 13899291
Description: ASSOCIATED WITH Walker-Warburg syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: FSD1-like protein; FSD1-like protein-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1246,768,150 - 246,916,650 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11246,768,098 - 246,847,084 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21276,459,492 - 276,540,869 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
FSD1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1246,768,150 - 246,916,650 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11246,768,098 - 246,847,084 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21276,459,492 - 276,540,869 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FSD1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9105,447,796 - 105,552,433 (+)EnsemblGRCh38hg38GRCh38
GRCh389105,442,183 - 105,552,433 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh379108,210,315 - 108,314,714 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369107,250,146 - 107,351,206 (+)NCBINCBI36hg18NCBI36
Build 349105,290,006 - 105,313,976NCBI
Celera978,715,679 - 78,816,545 (+)NCBI
Cytogenetic Map9q31.2NCBI
HuRef977,811,705 - 77,912,804 (+)NCBIHuRef
CHM1_19108,357,299 - 108,461,695 (+)NCBICHM1_1
Fsd1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39453,631,383 - 53,707,009 (+)NCBIGRCm39mm39
GRCm39 Ensembl453,631,471 - 53,707,009 (+)Ensembl
GRCm38453,631,383 - 53,707,009 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl453,631,471 - 53,707,009 (+)EnsemblGRCm38mm10GRCm38
MGSCv37453,644,427 - 53,664,491 (+)NCBIGRCm37mm9NCBIm37
MGSCv36453,652,603 - 53,672,890 (+)NCBImm8
Celera453,592,477 - 53,612,542 (+)NCBICelera
Cytogenetic Map4B2NCBI
Fsd1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2568,258,877 - 68,334,931 (+)NCBI
Rnor_6.0 Ensembl570,441,123 - 70,511,659 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0570,441,075 - 70,517,131 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0574,598,681 - 74,692,987 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4571,086,200 - 71,144,622 (+)NCBIRGSC3.4rn4RGSC3.4
Celera567,153,184 - 67,229,209 (+)NCBICelera
Cytogenetic Map5q24NCBI
Fsd1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541921,003,234 - 21,068,643 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541921,003,234 - 21,076,163 (-)NCBIChiLan1.0ChiLan1.0
FSD1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19104,747,122 - 104,843,758 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9104,761,018 - 104,837,806 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0976,619,595 - 76,717,372 (+)NCBIMhudiblu_PPA_v0panPan3
FSD1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1161,316,148 - 61,388,368 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11161,316,132 - 61,389,205 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Fsd1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365596,684,014 - 6,760,237 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FSD1L
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11233,973,416 - 34,059,379 (-)NCBI
ChlSab1.1 Ensembl1233,976,030 - 34,058,808 (-)Ensembl
Fsd1l
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247585,887,509 - 5,956,480 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 3 22
Low 2 4 5 2 1 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000005969   ⟹   ENSSSCP00000005821
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1246,786,207 - 246,844,829 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000005970   ⟹   ENSSSCP00000005822
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1246,768,206 - 246,916,647 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000038218   ⟹   ENSSSCP00000040631
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1246,768,150 - 246,916,650 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000044406   ⟹   ENSSSCP00000042704
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1246,785,741 - 246,849,033 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000047525   ⟹   ENSSSCP00000042220
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1246,768,150 - 246,916,650 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000047610   ⟹   ENSSSCP00000055472
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1246,768,150 - 246,916,650 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000051125   ⟹   ENSSSCP00000054939
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1246,768,176 - 246,844,863 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000052340   ⟹   ENSSSCP00000044140
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1246,785,741 - 246,843,905 (+)Ensembl
RefSeq Acc Id: XM_003480570   ⟹   XP_003480618
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11246,768,098 - 246,844,910 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005660313   ⟹   XP_005660370
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11246,768,147 - 246,847,084 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005660314   ⟹   XP_005660371
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11246,768,147 - 246,844,896 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003480618 (Get FASTA)   NCBI Sequence Viewer  
  XP_005660370 (Get FASTA)   NCBI Sequence Viewer  
  XP_005660371 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003480618   ⟸   XM_003480570
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005660370   ⟸   XM_005660313
- Peptide Label: isoform X1
- UniProtKB: A0A287AFN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005660371   ⟸   XM_005660314
- Peptide Label: isoform X2
- UniProtKB: A0A287AJF2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000005821   ⟸   ENSSSCT00000005969
RefSeq Acc Id: ENSSSCP00000005822   ⟸   ENSSSCT00000005970
RefSeq Acc Id: ENSSSCP00000042704   ⟸   ENSSSCT00000044406
RefSeq Acc Id: ENSSSCP00000054939   ⟸   ENSSSCT00000051125
RefSeq Acc Id: ENSSSCP00000044140   ⟸   ENSSSCT00000052340
RefSeq Acc Id: ENSSSCP00000040631   ⟸   ENSSSCT00000038218
RefSeq Acc Id: ENSSSCP00000042220   ⟸   ENSSSCT00000047525
RefSeq Acc Id: ENSSSCP00000055472   ⟸   ENSSSCT00000047610
Protein Domains
B30.2/SPRY   COS   Fibronectin type-III


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000005426 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000005821 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000005822 UniProtKB/TrEMBL
  ENSSSCP00000040631 UniProtKB/TrEMBL
  ENSSSCP00000042220 UniProtKB/TrEMBL
  ENSSSCP00000042704 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000044140 UniProtKB/TrEMBL
  ENSSSCP00000054939 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000055472 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005969 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000005970 UniProtKB/TrEMBL
  ENSSSCT00000038218 UniProtKB/TrEMBL
  ENSSSCT00000044406 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000047525 UniProtKB/TrEMBL
  ENSSSCT00000047610 UniProtKB/TrEMBL
  ENSSSCT00000051125 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000052340 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  Bbox_C UniProtKB/TrEMBL
  Butyrophylin_SPRY UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  COS_domain UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  SPRY/PRY_FSD1 UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
NCBI Gene FSD1L ENTREZGENE
Pfam fn3 UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
PRINTS BUTYPHLNCDUF UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  COS UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
SMART BBC UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt A0A287A9Y4_PIG UniProtKB/TrEMBL
  A0A287AEH5_PIG UniProtKB/TrEMBL
  A0A287AFN3 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AJF2 ENTREZGENE, UniProtKB/TrEMBL
  A0A287BEG6_PIG UniProtKB/TrEMBL
  A0A287BHD3_PIG UniProtKB/TrEMBL
  A0A480ETQ2_PIG UniProtKB/TrEMBL
  F1SP51_PIG UniProtKB/TrEMBL
  F1SP52_PIG UniProtKB/TrEMBL
VGNC ID VGNC:88252 ENTREZGENE