ANKMY2 (ankyrin repeat and MYND domain containing 2) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: ANKMY2 (ankyrin repeat and MYND domain containing 2) Sus scrofa
Analyze
Symbol: ANKMY2
Name: ankyrin repeat and MYND domain containing 2
RGD ID: 13897032
Description: ENCODES a protein that exhibits enzyme binding (ortholog); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy A7 (ortholog); High Myopia (ortholog); pleomorphic xanthoastrocytoma (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: ankyrin repeat and MYND domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl985,848,002 - 85,887,427 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1985,850,646 - 85,887,450 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17407547  


Genomics

Comparative Map Data
ANKMY2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl985,848,002 - 85,887,427 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1985,850,646 - 85,887,450 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ANKMY2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl716,599,779 - 16,645,817 (-)EnsemblGRCh38hg38GRCh38
GRCh38716,599,779 - 16,645,816 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37716,639,404 - 16,685,379 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36716,605,937 - 16,651,923 (-)NCBINCBI36hg18NCBI36
Build 34716,412,651 - 16,458,638NCBI
Celera716,619,158 - 16,665,198 (-)NCBI
Cytogenetic Map7p21.1NCBI
HuRef716,526,082 - 16,571,911 (-)NCBIHuRef
CHM1_1716,639,148 - 16,685,165 (-)NCBICHM1_1
CRA_TCAGchr7v2716,692,527 - 16,738,565 (-)NCBI
Ankmy2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391236,207,123 - 36,247,290 (+)NCBIGRCm39mm39
GRCm39 Ensembl1236,207,113 - 36,247,290 (+)Ensembl
GRCm381236,157,124 - 36,197,291 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1236,157,114 - 36,197,291 (+)EnsemblGRCm38mm10GRCm38
MGSCv371236,883,711 - 36,923,878 (+)NCBIGRCm37mm9NCBIm37
MGSCv361236,667,456 - 36,707,557 (+)NCBImm8
Celera1237,611,389 - 37,654,049 (+)NCBICelera
Cytogenetic Map12A3NCBI
Ankmy2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2652,888,963 - 52,930,341 (+)NCBI
Rnor_6.0 Ensembl655,648,021 - 55,689,218 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0655,646,905 - 55,689,223 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0665,261,174 - 65,303,415 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4654,881,681 - 54,923,743 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1654,883,873 - 54,926,014 (+)NCBI
Celera652,031,590 - 52,072,350 (+)NCBICelera
Cytogenetic Map6q16NCBI
Ankmy2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541019,778,736 - 19,813,150 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541019,778,736 - 19,812,731 (-)NCBIChiLan1.0ChiLan1.0
ANKMY2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1716,581,302 - 16,628,359 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl716,581,308 - 16,628,359 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0717,255,793 - 17,301,997 (-)NCBIMhudiblu_PPA_v0panPan3
ANKMY2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1431,118,013 - 31,153,874 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11431,117,375 - 31,153,916 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ankmy2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365463,124,124 - 3,159,701 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKMY2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12141,470,011 - 41,517,172 (+)NCBI
ChlSab1.1 Ensembl2141,470,033 - 41,517,608 (+)Ensembl
Ankmy2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473913,580,903 - 13,615,812 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000016735   ⟹   ENSSSCP00000016289
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl985,848,002 - 85,887,427 (-)Ensembl
RefSeq Acc Id: NM_001243401   ⟹   NP_001230330
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1985,850,646 - 85,887,450 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013991184   ⟹   XP_013846638
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1985,850,654 - 85,886,993 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001230330 (Get FASTA)   NCBI Sequence Viewer  
  XP_013846638 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001230330   ⟸   NM_001243401
- UniProtKB: F1SEJ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013846638   ⟸   XM_013991184
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSSSCP00000016289   ⟸   ENSSSCT00000016735
Protein Domains
ANK_REP_REGION   MYND-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015360 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070009059 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000016289 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070014580 UniProtKB/TrEMBL
  ENSSSCP00070014598 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000016735 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070017588 UniProtKB/TrEMBL
  ENSSSCT00070017608 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_dom UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  Znf_MYND UniProtKB/TrEMBL
KEGG Report ssc:100627896 UniProtKB/TrEMBL
NCBI Gene ANKMY2 ENTREZGENE
Pfam Ank_2 UniProtKB/TrEMBL
  zf-MYND UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  ZF_MYND_1 UniProtKB/TrEMBL
  ZF_MYND_2 UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A4X1TDY8_PIG UniProtKB/TrEMBL
  A0A4X1TE01_PIG UniProtKB/TrEMBL
  F1SEJ0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:85319 ENTREZGENE