GOLPH3L (golgi phosphoprotein 3 like) - Rat Genome Database

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Gene: GOLPH3L (golgi phosphoprotein 3 like) Sus scrofa
Analyze
Symbol: GOLPH3L
Name: golgi phosphoprotein 3 like
RGD ID: 13896673
Description: ENCODES a protein that exhibits cargo adaptor activity (ortholog); INVOLVED IN protein targeting to Golgi apparatus (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); immunodeficiency 42 (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); Golgi apparatus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Golgi phosphoprotein 3-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,470,463 - 98,510,633 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,470,463 - 98,510,635 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24107,719,118 - 107,758,543 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GOLPH3L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,470,463 - 98,510,633 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,470,463 - 98,510,635 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24107,719,118 - 107,758,543 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GOLPH3L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381150,646,230 - 150,697,154 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1150,646,230 - 150,697,154 (-)EnsemblGRCh38hg38GRCh38
GRCh371150,618,706 - 150,669,630 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361148,885,330 - 148,936,257 (-)NCBINCBI36Build 36hg18NCBI36
Build 341147,431,778 - 147,482,706NCBI
Celera1123,734,457 - 123,785,433 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1121,996,544 - 122,048,138 (-)NCBIHuRef
CHM1_11152,014,434 - 152,065,394 (-)NCBICHM1_1
T2T-CHM13v2.01149,770,312 - 149,822,032 (-)NCBIT2T-CHM13v2.0
Golph3l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39395,496,280 - 95,526,553 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl395,496,245 - 95,526,553 (+)EnsemblGRCm39 Ensembl
GRCm38395,588,915 - 95,619,247 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,588,934 - 95,619,247 (+)EnsemblGRCm38mm10GRCm38
MGSCv37395,392,856 - 95,423,169 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36395,674,363 - 95,704,646 (+)NCBIMGSCv36mm8
Celera397,020,564 - 97,050,880 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.74NCBI
Golph3l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82185,840,879 - 185,872,037 (+)NCBIGRCr8
mRatBN7.22183,151,941 - 183,183,094 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2183,153,301 - 183,183,083 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2190,818,181 - 190,846,933 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02188,613,698 - 188,642,408 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02183,450,708 - 183,479,459 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02197,720,259 - 197,749,060 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2197,715,761 - 197,750,115 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02217,210,324 - 217,236,006 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2175,684,192 - 175,712,842 (+)NCBICelera
Cytogenetic Map2q34NCBI
Golph3l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955413150,864 - 183,657 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955413154,696 - 183,657 (+)NCBIChiLan1.0ChiLan1.0
GOLPH3L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2199,129,911 - 99,180,807 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1198,883,544 - 98,934,437 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01126,002,787 - 126,053,672 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11129,652,118 - 129,703,379 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1129,652,118 - 129,703,379 (-)Ensemblpanpan1.1panPan2
GOLPH3L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11759,819,152 - 59,859,650 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1759,819,157 - 59,859,602 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1759,263,685 - 59,305,397 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01760,833,163 - 60,875,319 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1760,833,162 - 60,875,356 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11759,663,181 - 59,705,339 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01759,748,888 - 59,789,094 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01760,475,048 - 60,517,186 (-)NCBIUU_Cfam_GSD_1.0
Golph3l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505821,859,696 - 21,901,507 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936580890,063 - 931,951 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936580890,078 - 931,907 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GOLPH3L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366603812,581,975 - 12,631,877 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Golph3l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477218,342,520 - 18,377,653 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477218,342,613 - 18,378,037 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GOLPH3L
864 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 2 3 5 2 20 2 3 3
Low 2 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000007286   ⟹   ENSSSCP00000007091
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl498,470,463 - 98,510,198 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000066042   ⟹   ENSSSCP00000039447
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl498,470,463 - 98,510,633 (+)Ensembl
RefSeq Acc Id: XM_005663495   ⟹   XP_005663552
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,470,463 - 98,510,631 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005663498   ⟹   XP_005663555
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,470,476 - 98,510,635 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013997188   ⟹   XP_013852642
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,470,467 - 98,510,635 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021089894   ⟹   XP_020945553
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,470,598 - 98,510,635 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005663552   ⟸   XM_005663495
- Peptide Label: isoform X1
- UniProtKB: A0A287A0S1 (UniProtKB/TrEMBL),   A0A8D1FRE1 (UniProtKB/TrEMBL),   A0A8D0TUJ2 (UniProtKB/TrEMBL),   A0A8D0IBU9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013852642   ⟸   XM_013997188
- Peptide Label: isoform X1
- UniProtKB: A0A287A0S1 (UniProtKB/TrEMBL),   A0A8D1FRE1 (UniProtKB/TrEMBL),   A0A8D0TUJ2 (UniProtKB/TrEMBL),   A0A8D0IBU9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005663555   ⟸   XM_005663498
- Peptide Label: isoform X2
- UniProtKB: A0A8D0TUJ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020945553   ⟸   XM_021089894
- Peptide Label: isoform X2
- UniProtKB: A0A8D0TUJ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000007091   ⟸   ENSSSCT00000007286
RefSeq Acc Id: ENSSSCP00000039447   ⟸   ENSSSCT00000066042


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000038558 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005012585 UniProtKB/TrEMBL
  ENSSSCG00015005566 UniProtKB/TrEMBL
  ENSSSCG00025057648 UniProtKB/TrEMBL
  ENSSSCG00030055540 UniProtKB/TrEMBL
  ENSSSCG00035057376 UniProtKB/TrEMBL
  ENSSSCG00040068851 UniProtKB/TrEMBL
  ENSSSCG00045018440 UniProtKB/TrEMBL
  ENSSSCG00050061313 UniProtKB/TrEMBL
  ENSSSCG00055025710 UniProtKB/TrEMBL
  ENSSSCG00060017827 UniProtKB/TrEMBL
  ENSSSCG00065068036 UniProtKB/TrEMBL
  ENSSSCG00070000400 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000066042 ENTREZGENE
  ENSSSCT00000066042.3 UniProtKB/TrEMBL
  ENSSSCT00005019934.1 UniProtKB/TrEMBL
  ENSSSCT00005019963.1 UniProtKB/TrEMBL
  ENSSSCT00005019984.1 UniProtKB/TrEMBL
  ENSSSCT00005020004.1 UniProtKB/TrEMBL
  ENSSSCT00005020048.1 UniProtKB/TrEMBL
  ENSSSCT00005020348.1 UniProtKB/TrEMBL
  ENSSSCT00015007402.1 UniProtKB/TrEMBL
  ENSSSCT00015007425.1 UniProtKB/TrEMBL
  ENSSSCT00015007433.1 UniProtKB/TrEMBL
  ENSSSCT00015007448.1 UniProtKB/TrEMBL
  ENSSSCT00025079040.1 UniProtKB/TrEMBL
  ENSSSCT00025079158.1 UniProtKB/TrEMBL
  ENSSSCT00025079320.1 UniProtKB/TrEMBL
  ENSSSCT00030077419.1 UniProtKB/TrEMBL
  ENSSSCT00030077476.1 UniProtKB/TrEMBL
  ENSSSCT00030077513.1 UniProtKB/TrEMBL
  ENSSSCT00030077530.1 UniProtKB/TrEMBL
  ENSSSCT00035076748.1 UniProtKB/TrEMBL
  ENSSSCT00035076753.1 UniProtKB/TrEMBL
  ENSSSCT00035076756.1 UniProtKB/TrEMBL
  ENSSSCT00040094427.1 UniProtKB/TrEMBL
  ENSSSCT00040094511.1 UniProtKB/TrEMBL
  ENSSSCT00040094709.1 UniProtKB/TrEMBL
  ENSSSCT00040094930.1 UniProtKB/TrEMBL
  ENSSSCT00045031508.1 UniProtKB/TrEMBL
  ENSSSCT00045031596.1 UniProtKB/TrEMBL
  ENSSSCT00045031640.1 UniProtKB/TrEMBL
  ENSSSCT00050083553.1 UniProtKB/TrEMBL
  ENSSSCT00050083558.1 UniProtKB/TrEMBL
  ENSSSCT00050083568.1 UniProtKB/TrEMBL
  ENSSSCT00055050952.1 UniProtKB/TrEMBL
  ENSSSCT00055051062.1 UniProtKB/TrEMBL
  ENSSSCT00060023907.1 UniProtKB/TrEMBL
  ENSSSCT00060023917.1 UniProtKB/TrEMBL
  ENSSSCT00060023925.1 UniProtKB/TrEMBL
  ENSSSCT00060023934.1 UniProtKB/TrEMBL
  ENSSSCT00065093412.1 UniProtKB/TrEMBL
  ENSSSCT00065093421.1 UniProtKB/TrEMBL
  ENSSSCT00065093432.1 UniProtKB/TrEMBL
  ENSSSCT00065093438.1 UniProtKB/TrEMBL
  ENSSSCT00065093456.1 UniProtKB/TrEMBL
  ENSSSCT00065093477.1 UniProtKB/TrEMBL
  ENSSSCT00070000738.1 UniProtKB/TrEMBL
  ENSSSCT00070000762.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.3630.10 UniProtKB/TrEMBL
InterPro Endosulphine UniProtKB/TrEMBL
  GPP34-like UniProtKB/TrEMBL
  GPP34-like_sf UniProtKB/TrEMBL
KEGG Report ssc:100153347 UniProtKB/TrEMBL
NCBI Gene GOLPH3L ENTREZGENE
PANTHER ALPHA-ENDOSULFINE UniProtKB/TrEMBL
  GOLGI PHOSPHOPROTEIN 3-LIKE UniProtKB/TrEMBL
  PTHR10358 UniProtKB/TrEMBL
  PTHR12704 UniProtKB/TrEMBL
Pfam Endosulfine UniProtKB/TrEMBL
  GPP34 UniProtKB/TrEMBL
UniProt A0A287A0S1 ENTREZGENE
  A0A4X1SEM8_PIG UniProtKB/TrEMBL
  A0A4X1SEQ5_PIG UniProtKB/TrEMBL
  A0A4X1SF67_PIG UniProtKB/TrEMBL
  A0A8D0IBU9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IQV4_PIG UniProtKB/TrEMBL
  A0A8D0MFS0_PIG UniProtKB/TrEMBL
  A0A8D0MFT0_PIG UniProtKB/TrEMBL
  A0A8D0SQI4_PIG UniProtKB/TrEMBL
  A0A8D0TUJ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1FRE1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1NDM5_PIG UniProtKB/TrEMBL
  A0A8D1RSB3_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287A0S1 UniProtKB/TrEMBL
VGNC ID VGNC:88556 ENTREZGENE