LOC100519092 (olfactory receptor 8S1-like) - Rat Genome Database

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Pathways
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Gene: LOC100519092 (olfactory receptor 8S1-like) Sus scrofa
Analyze
No known orthologs.
Symbol: LOC100519092
Name: olfactory receptor 8S1-like
RGD ID: 13896197
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1579,051,441 - 79,052,376 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Variants

.
Variants in LOC100519092
24 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system
High
Medium
Low
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003481728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003481728   ⟹   XP_003481776
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1579,051,441 - 79,052,376 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003481776   ⟸   XM_003481728
- UniProtKB: A0A4X1TB81 (UniProtKB/TrEMBL),   A0A287AW51 (UniProtKB/TrEMBL),   A0A4X1SJD8 (UniProtKB/TrEMBL),   A0A8D1XER9 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000033668 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005030890 UniProtKB/TrEMBL
  ENSSSCG00015051582 UniProtKB/TrEMBL
  ENSSSCG00025049450 UniProtKB/TrEMBL
  ENSSSCG00030046983 UniProtKB/TrEMBL
  ENSSSCG00035056727 UniProtKB/TrEMBL
  ENSSSCG00040038770 UniProtKB/TrEMBL
  ENSSSCG00045032532 UniProtKB/TrEMBL
  ENSSSCG00050020820 UniProtKB/TrEMBL
  ENSSSCG00055021176 UniProtKB/TrEMBL
  ENSSSCG00060039787 UniProtKB/TrEMBL
  ENSSSCG00065009092 UniProtKB/TrEMBL
  ENSSSCG00070001594 UniProtKB/TrEMBL
  ENSSSCG00070007961 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000059909 ENTREZGENE
  ENSSSCT00000059909.2 UniProtKB/TrEMBL
  ENSSSCT00005049195.1 UniProtKB/TrEMBL
  ENSSSCT00015068644.1 UniProtKB/TrEMBL
  ENSSSCT00025067314.1 UniProtKB/TrEMBL
  ENSSSCT00030065515.1 UniProtKB/TrEMBL
  ENSSSCT00035075799.1 UniProtKB/TrEMBL
  ENSSSCT00040051811.1 UniProtKB/TrEMBL
  ENSSSCT00045055521.1 UniProtKB/TrEMBL
  ENSSSCT00050028067.1 UniProtKB/TrEMBL
  ENSSSCT00055041577.1 UniProtKB/TrEMBL
  ENSSSCT00060053871.1 UniProtKB/TrEMBL
  ENSSSCT00065012112.1 UniProtKB/TrEMBL
  ENSSSCT00070002969.1 UniProtKB/TrEMBL
  ENSSSCT00070015331.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report ssc:100519092 UniProtKB/TrEMBL
NCBI Gene LOC100519092 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A287AW51 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SJD8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TB81 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1XER9 ENTREZGENE, UniProtKB/TrEMBL