BIVM (basic, immunoglobulin-like variable motif containing) - Rat Genome Database

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Gene: BIVM (basic, immunoglobulin-like variable motif containing) Sus scrofa
Analyze
Symbol: BIVM
Name: basic, immunoglobulin-like variable motif containing
RGD ID: 13894849
Description: ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); Evans Syndrome, Immunodeficiency, and Premature Immunosenescence associated with Tripeptidyl-Peptidase II Deficiency (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: basic immunoglobulin-like variable motif-containing protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1171,110,857 - 71,138,863 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11171,110,463 - 71,138,861 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21178,484,667 - 78,490,802 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:17407547   PMID:30032202  


Genomics

Comparative Map Data
BIVM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1171,110,857 - 71,138,863 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11171,110,463 - 71,138,861 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21178,484,667 - 78,490,802 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BIVM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813102,799,119 - 102,841,533 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13102,799,119 - 102,841,533 (+)EnsemblGRCh38hg38GRCh38
GRCh3713103,451,469 - 103,493,883 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3613102,249,400 - 102,291,882 (+)NCBINCBI36Build 36hg18NCBI36
Build 3413102,249,399 - 102,291,882NCBI
Celera1384,295,880 - 84,338,368 (+)NCBICelera
Cytogenetic Map13q33.1NCBI
HuRef1384,043,740 - 84,086,115 (+)NCBIHuRef
CHM1_113103,420,845 - 103,463,337 (+)NCBICHM1_1
T2T-CHM13v2.013102,017,295 - 102,059,729 (+)NCBIT2T-CHM13v2.0
Bivm
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39144,158,032 - 44,183,931 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl144,158,117 - 44,183,930 (+)EnsemblGRCm39 Ensembl
GRCm38144,118,957 - 44,144,771 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl144,118,957 - 44,144,770 (+)EnsemblGRCm38mm10GRCm38
MGSCv37144,176,813 - 44,201,616 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36144,064,553 - 44,089,316 (+)NCBIMGSCv36mm8
Celera144,463,412 - 44,488,697 (+)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map123.54NCBI
Bivm
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8953,760,885 - 53,797,125 (+)NCBIGRCr8
mRatBN7.2946,268,758 - 46,305,038 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl946,269,252 - 46,305,024 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx954,785,200 - 54,820,438 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0959,907,996 - 59,943,235 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0958,188,236 - 58,229,864 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0950,884,888 - 50,921,133 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl950,892,605 - 50,919,791 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0950,551,839 - 50,588,094 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4943,207,509 - 43,242,930 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera943,973,403 - 44,008,270 (+)NCBICelera
Cytogenetic Map9q22NCBI
Bivm
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554048,325,187 - 8,354,350 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554048,327,295 - 8,358,453 (-)NCBIChiLan1.0ChiLan1.0
BIVM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214104,316,431 - 104,359,185 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113102,986,201 - 103,028,740 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01383,959,365 - 84,002,223 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113103,096,344 - 103,138,551 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13103,096,344 - 103,174,182 (+)Ensemblpanpan1.1panPan2
BIVM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12252,296,126 - 52,335,744 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2252,096,201 - 52,114,368 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02252,743,777 - 52,783,503 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2252,743,770 - 52,783,499 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12252,416,737 - 52,434,896 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02252,432,874 - 52,451,220 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02252,474,086 - 52,492,288 (+)NCBIUU_Cfam_GSD_1.0
Bivm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945187,678,780 - 187,714,475 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364728,239,064 - 8,267,493 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364728,237,680 - 8,273,335 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BIVM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1381,360,868 - 81,401,813 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl381,368,637 - 81,403,182 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604637,897,826 - 37,938,520 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bivm
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247938,662,713 - 8,692,575 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247938,661,320 - 8,698,081 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BIVM
1421 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1
Low 10 4 3 4 2 22 2 3 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001252098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021065131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021065132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021065133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021065134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021065135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK232672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK393584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK395736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN161877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU469267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN130596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DY417526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DY430731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EW272731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EW297513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FS690117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01059903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSSCT00000010452   ⟹   ENSSSCP00000010181
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1171,110,857 - 71,138,859 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000062126   ⟹   ENSSSCP00000043242
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1171,112,845 - 71,138,863 (+)Ensembl
RefSeq Acc Id: NM_001252098   ⟹   NP_001239027
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11171,110,857 - 71,138,861 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065131   ⟹   XP_020920790
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11171,114,561 - 71,138,861 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065132   ⟹   XP_020920791
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11171,110,463 - 71,138,861 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065133   ⟹   XP_020920792
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11171,111,781 - 71,138,861 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065134   ⟹   XP_020920793
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11171,112,806 - 71,138,861 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065135   ⟹   XP_020920794
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11171,115,693 - 71,138,861 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020920791   ⟸   XM_021065132
- Peptide Label: isoform X2
- UniProtKB: A0A8D0Y2C0 (UniProtKB/TrEMBL),   A0A287AHA7 (UniProtKB/TrEMBL),   A0A4X1U9D0 (UniProtKB/TrEMBL),   A0A8D1WDS1 (UniProtKB/TrEMBL),   F1RLP6 (UniProtKB/TrEMBL),   A0A8D0J677 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239027   ⟸   NM_001252098
- UniProtKB: A0A8D1WDS1 (UniProtKB/TrEMBL),   F1RLP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020920792   ⟸   XM_021065133
- Peptide Label: isoform X2
- UniProtKB: A0A8D0Y2C0 (UniProtKB/TrEMBL),   A0A287AHA7 (UniProtKB/TrEMBL),   A0A4X1U9D0 (UniProtKB/TrEMBL),   A0A8D1WDS1 (UniProtKB/TrEMBL),   F1RLP6 (UniProtKB/TrEMBL),   A0A8D0J677 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020920793   ⟸   XM_021065134
- Peptide Label: isoform X2
- UniProtKB: A0A8D0Y2C0 (UniProtKB/TrEMBL),   A0A287AHA7 (UniProtKB/TrEMBL),   A0A4X1U9D0 (UniProtKB/TrEMBL),   A0A8D1WDS1 (UniProtKB/TrEMBL),   F1RLP6 (UniProtKB/TrEMBL),   A0A8D0J677 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020920790   ⟸   XM_021065131
- Peptide Label: isoform X1
- UniProtKB: A0A8D0NG28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020920794   ⟸   XM_021065135
- Peptide Label: isoform X2
- UniProtKB: A0A8D0Y2C0 (UniProtKB/TrEMBL),   A0A287AHA7 (UniProtKB/TrEMBL),   A0A4X1U9D0 (UniProtKB/TrEMBL),   A0A8D1WDS1 (UniProtKB/TrEMBL),   F1RLP6 (UniProtKB/TrEMBL),   A0A8D0J677 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000043242   ⟸   ENSSSCT00000062126
RefSeq Acc Id: ENSSSCP00000010181   ⟸   ENSSSCT00000010452


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009534 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005021757 UniProtKB/TrEMBL
  ENSSSCG00015033998 UniProtKB/TrEMBL
  ENSSSCG00025013679 UniProtKB/TrEMBL
  ENSSSCG00030070420 UniProtKB/TrEMBL
  ENSSSCG00035004449 UniProtKB/TrEMBL
  ENSSSCG00040021877 UniProtKB/TrEMBL
  ENSSSCG00045016501 UniProtKB/TrEMBL
  ENSSSCG00050007072 UniProtKB/TrEMBL
  ENSSSCG00055026021 UniProtKB/TrEMBL
  ENSSSCG00060064753 UniProtKB/TrEMBL
  ENSSSCG00065044765 UniProtKB/TrEMBL
  ENSSSCG00070015031 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010452 ENTREZGENE
  ENSSSCT00000010452.4 UniProtKB/TrEMBL
  ENSSSCT00000062126 ENTREZGENE
  ENSSSCT00000062126.3 UniProtKB/TrEMBL
  ENSSSCT00005034334.1 UniProtKB/TrEMBL
  ENSSSCT00005034371.1 UniProtKB/TrEMBL
  ENSSSCT00005034387.1 UniProtKB/TrEMBL
  ENSSSCT00005034394.1 UniProtKB/TrEMBL
  ENSSSCT00015045081.1 UniProtKB/TrEMBL
  ENSSSCT00015045226.1 UniProtKB/TrEMBL
  ENSSSCT00025018168.1 UniProtKB/TrEMBL
  ENSSSCT00025018209.1 UniProtKB/TrEMBL
  ENSSSCT00030098492.1 UniProtKB/TrEMBL
  ENSSSCT00030098526.1 UniProtKB/TrEMBL
  ENSSSCT00035005568.1 UniProtKB/TrEMBL
  ENSSSCT00035005574.1 UniProtKB/TrEMBL
  ENSSSCT00040029350.1 UniProtKB/TrEMBL
  ENSSSCT00040029364.1 UniProtKB/TrEMBL
  ENSSSCT00045028061.1 UniProtKB/TrEMBL
  ENSSSCT00045028130.1 UniProtKB/TrEMBL
  ENSSSCT00050009664.1 UniProtKB/TrEMBL
  ENSSSCT00055051373.1 UniProtKB/TrEMBL
  ENSSSCT00055051428.1 UniProtKB/TrEMBL
  ENSSSCT00060088375.1 UniProtKB/TrEMBL
  ENSSSCT00060088378.1 UniProtKB/TrEMBL
  ENSSSCT00065061243.1 UniProtKB/TrEMBL
  ENSSSCT00065061250.1 UniProtKB/TrEMBL
  ENSSSCT00070029650.1 UniProtKB/TrEMBL
  ENSSSCT00070029682.1 UniProtKB/TrEMBL
  ENSSSCT00070029695.1 UniProtKB/TrEMBL
  ENSSSCT00070029701.1 UniProtKB/TrEMBL
NCBI Gene BIVM ENTREZGENE
PANTHER DNA EXCISION REPAIR PROTEIN ERCC-5 UniProtKB/TrEMBL
  DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED UniProtKB/TrEMBL
UniProt A0A287AHA7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U7C8_PIG UniProtKB/TrEMBL
  A0A4X1U9D0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0J677 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0NG28 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0Y2C0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1DUF6_PIG UniProtKB/TrEMBL
  A0A8D1WDS1 ENTREZGENE, UniProtKB/TrEMBL
  F1RLP6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:109180 ENTREZGENE