BIVM (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 11 | 71,110,857 - 71,138,863 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 11 | 71,110,463 - 71,138,861 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 11 | 78,484,667 - 78,490,802 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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BIVM (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 13 | 102,799,119 - 102,841,533 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 13 | 102,799,119 - 102,841,533 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 13 | 103,451,469 - 103,493,883 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 13 | 102,249,400 - 102,291,882 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 13 | 102,249,399 - 102,291,882 | NCBI | | | | | Celera | 13 | 84,295,880 - 84,338,368 (+) | NCBI | | Celera | | | Cytogenetic Map | 13 | q33.1 | NCBI | | | | | HuRef | 13 | 84,043,740 - 84,086,115 (+) | NCBI | | HuRef | | | CHM1_1 | 13 | 103,420,845 - 103,463,337 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 13 | 102,017,295 - 102,059,729 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Bivm (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 1 | 44,158,032 - 44,183,931 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 1 | 44,158,117 - 44,183,930 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 1 | 44,118,957 - 44,144,771 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 1 | 44,118,957 - 44,144,770 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 1 | 44,176,813 - 44,201,616 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 1 | 44,064,553 - 44,089,316 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 1 | 44,463,412 - 44,488,697 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | C1.1 | NCBI | | | | | cM Map | 1 | 23.54 | NCBI | | | | |
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Bivm (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 9 | 53,760,885 - 53,797,125 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 9 | 46,268,758 - 46,305,038 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 9 | 46,269,252 - 46,305,024 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 9 | 54,785,200 - 54,820,438 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 9 | 59,907,996 - 59,943,235 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 9 | 58,188,236 - 58,229,864 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 9 | 50,884,888 - 50,921,133 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 9 | 50,892,605 - 50,919,791 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 9 | 50,551,839 - 50,588,094 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 9 | 43,207,509 - 43,242,930 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 9 | 43,973,403 - 44,008,270 (+) | NCBI | | Celera | | | Cytogenetic Map | 9 | q22 | NCBI | | | | |
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Bivm (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955404 | 8,325,187 - 8,354,350 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955404 | 8,327,295 - 8,358,453 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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BIVM (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 14 | 104,316,431 - 104,359,185 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 13 | 102,986,201 - 103,028,740 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 13 | 83,959,365 - 84,002,223 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 13 | 103,096,344 - 103,138,551 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 13 | 103,096,344 - 103,174,182 (+) | Ensembl | panpan1.1 | | panPan2 | |
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BIVM (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 22 | 52,296,126 - 52,335,744 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 22 | 52,096,201 - 52,114,368 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 22 | 52,743,777 - 52,783,503 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 22 | 52,743,770 - 52,783,499 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 22 | 52,416,737 - 52,434,896 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 22 | 52,432,874 - 52,451,220 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 22 | 52,474,086 - 52,492,288 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Bivm (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024404945 | 187,678,780 - 187,714,475 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936472 | 8,239,064 - 8,267,493 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936472 | 8,237,680 - 8,273,335 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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BIVM (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 3 | 81,360,868 - 81,401,813 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 3 | 81,368,637 - 81,403,182 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666046 | 37,897,826 - 37,938,520 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Bivm (Heterocephalus glaber - naked mole-rat) |
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