FCRL4 (Fc receptor like 4) - Rat Genome Database

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Gene: FCRL4 (Fc receptor like 4) Sus scrofa
Analyze
Symbol: FCRL4
Name: Fc receptor like 4
RGD ID: 13891015
Description: ENCODES a protein that exhibits transmembrane signaling receptor activity (inferred); INVOLVED IN cell surface receptor signaling pathway (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); Hydrops Fetalis (ortholog); FOUND IN cell surface (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Fc receptor-like protein 4
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl492,543,263 - 92,567,723 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1492,542,380 - 92,570,481 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24100,881,142 - 100,906,091 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FCRL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl492,543,263 - 92,567,723 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1492,542,380 - 92,570,481 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24100,881,142 - 100,906,091 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FCRL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381157,573,747 - 157,598,085 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1157,573,747 - 157,598,085 (-)EnsemblGRCh38hg38GRCh38
GRCh371157,543,537 - 157,567,875 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361155,810,163 - 155,834,494 (-)NCBINCBI36Build 36hg18NCBI36
Celera1130,614,746 - 130,639,074 (-)NCBICelera
Cytogenetic Map1q23.1NCBI
HuRef1128,901,584 - 128,925,881 (-)NCBIHuRef
CHM1_11158,939,831 - 158,964,163 (-)NCBICHM1_1
T2T-CHM13v2.01156,710,808 - 156,735,121 (-)NCBIT2T-CHM13v2.0
Fcrl4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554689,478,180 - 9,503,127 (-)NCBIChiLan1.0ChiLan1.0
FCRL4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2192,248,834 - 92,271,917 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1191,992,021 - 92,015,110 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01132,935,602 - 132,960,346 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11136,728,473 - 136,752,838 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1136,728,473 - 136,752,838 (-)Ensemblpanpan1.1panPan2
FCRL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1740,644,899 - 40,670,549 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl740,644,234 - 40,678,326 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha740,125,904 - 40,151,854 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0740,476,123 - 40,502,075 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl740,475,884 - 40,550,755 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1740,318,395 - 40,344,253 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0740,326,566 - 40,352,506 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0740,595,541 - 40,621,494 (+)NCBIUU_Cfam_GSD_1.0
FCRL4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1206,290,078 - 6,313,746 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl206,291,279 - 6,313,686 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660385,566,516 - 5,589,514 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fcrl4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247943,167,217 - 3,191,770 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247943,167,263 - 3,190,100 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FCRL4
639 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system hemolymphoid system reproductive system respiratory system
High
Medium 3 1
Low 4 2 2 1
Below cutoff 5 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000007075   ⟹   ENSSSCP00000006883
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl492,543,482 - 92,567,740 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000053228   ⟹   ENSSSCP00000032958
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl492,544,846 - 92,567,190 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000068291   ⟹   ENSSSCP00000074103
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl492,543,263 - 92,567,723 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000070538   ⟹   ENSSSCP00000061708
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl492,543,425 - 92,567,719 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000078205   ⟹   ENSSSCP00000070619
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl492,543,003 - 92,567,649 (+)Ensembl
RefSeq Acc Id: XM_005663242   ⟹   XP_005663299
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1492,542,382 - 92,570,481 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013996932   ⟹   XP_013852386
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1492,542,380 - 92,570,481 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021089615   ⟹   XP_020945274
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1492,542,380 - 92,570,481 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_013852386   ⟸   XM_013996932
- Peptide Label: isoform X3
- UniProtKB: A0A5G2QI67 (UniProtKB/TrEMBL),   A0A8D0Z0M5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020945274   ⟸   XM_021089615
- Peptide Label: isoform X2
- UniProtKB: A0A8D0P6M5 (UniProtKB/TrEMBL),   A0A8D1BPT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005663299   ⟸   XM_005663242
- Peptide Label: isoform X1
- UniProtKB: A0A480EAB3 (UniProtKB/TrEMBL),   A0A8D1HHK2 (UniProtKB/TrEMBL),   A0A8D0P6M5 (UniProtKB/TrEMBL),   A0A8D1BPT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000074103   ⟸   ENSSSCT00000068291
RefSeq Acc Id: ENSSSCP00000070619   ⟸   ENSSSCT00000078205
RefSeq Acc Id: ENSSSCP00000061708   ⟸   ENSSSCT00000070538
RefSeq Acc Id: ENSSSCP00000006883   ⟸   ENSSSCT00000007075
RefSeq Acc Id: ENSSSCP00000032958   ⟸   ENSSSCT00000053228
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006458 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015050633 UniProtKB/TrEMBL
  ENSSSCG00025063478 UniProtKB/TrEMBL
  ENSSSCG00030015072 UniProtKB/TrEMBL
  ENSSSCG00035017324 UniProtKB/TrEMBL
  ENSSSCG00040001994 UniProtKB/TrEMBL
  ENSSSCG00045015402 UniProtKB/TrEMBL
  ENSSSCG00055027345 UniProtKB/TrEMBL
  ENSSSCG00065018345 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000053228.1 UniProtKB/TrEMBL
  ENSSSCT00000068291 ENTREZGENE
  ENSSSCT00000068291.2 UniProtKB/TrEMBL
  ENSSSCT00000070538 ENTREZGENE
  ENSSSCT00000070538.1 UniProtKB/TrEMBL
  ENSSSCT00015067595.1 UniProtKB/TrEMBL
  ENSSSCT00025087517.1 UniProtKB/TrEMBL
  ENSSSCT00030020812.1 UniProtKB/TrEMBL
  ENSSSCT00035022251.1 UniProtKB/TrEMBL
  ENSSSCT00035022274.1 UniProtKB/TrEMBL
  ENSSSCT00040002454.1 UniProtKB/TrEMBL
  ENSSSCT00045026174.1 UniProtKB/TrEMBL
  ENSSSCT00045026336.1 UniProtKB/TrEMBL
  ENSSSCT00055054120.1 UniProtKB/TrEMBL
  ENSSSCT00055054272.1 UniProtKB/TrEMBL
  ENSSSCT00065024391.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
NCBI Gene FCRL4 ENTREZGENE
PANTHER FC RECEPTOR-LIKE PROTEIN 4 UniProtKB/TrEMBL
  IMMUNOGLOBULIN FC RECEPTOR UniProtKB/TrEMBL
Pfam Ig_2 UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A286ZNB2_PIG UniProtKB/TrEMBL
  A0A480EAB3 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QI67 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2RGH8_PIG UniProtKB/TrEMBL
  A0A8D0P6M5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0Z0M5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1BPT9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1HHK2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:88070 ENTREZGENE