AKR1C4 (aldo-keto reductase family 1 member C4) - Rat Genome Database

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Gene: AKR1C4 (aldo-keto reductase family 1 member C4) Sus scrofa
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Symbol: AKR1C4 (Ensembl: AKR1C8)
Name: aldo-keto reductase family 1 member C4
RGD ID: 13890146
Description: ENCODES a protein that exhibits aldo-keto reductase (NADPH) activity (ortholog); INVOLVED IN prostaglandin biosynthetic process; ASSOCIATED WITH schizophrenia (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: akr; AKR1C6; AKR1CL1; aldo-keto reductase family 1 member C1; aldo-keto reductase family 1 member C2; aldo-keto reductase family 1, member C-like 1; aldo-keto reductase family 1, member C4 (chlordecone reductase, 3-alpha hydroxysteroid dehydrogenase, type I, dihydrodiol dehydrogenase 4); PGFS; prostaglandin F synthase; putative aldo-keto reductase family 1 member C4
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1065,559,508 - 65,572,895 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11065,559,508 - 65,572,892 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21072,009,208 - 72,022,624 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (IEA)

References
Additional References at PubMed
PMID:14681463   PMID:16223862   PMID:16970816   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
AKR1C4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1065,559,508 - 65,572,895 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11065,559,508 - 65,572,892 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21072,009,208 - 72,022,624 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AKR1C8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38105,115,813 - 5,185,150 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl105,153,920 - 5,185,187 (-)EnsemblGRCh38hg38GRCh38
GRCh37105,196,120 - 5,227,113 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36105,186,655 - 5,217,150 (-)NCBINCBI36Build 36hg18NCBI36
Celera105,136,630 - 5,167,354 (-)NCBICelera
Cytogenetic Map10p15.1NCBI
HuRef105,130,352 - 5,162,234 (-)NCBIHuRef
CHM1_1105,196,989 - 5,227,724 (-)NCBICHM1_1
T2T-CHM13v2.0105,115,808 - 5,186,948 (-)NCBIT2T-CHM13v2.0
Akr1c15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81771,091,398 - 71,117,985 (-)NCBIGRCr8
mRatBN7.21766,181,493 - 66,208,090 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1766,181,493 - 66,208,061 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1769,666,632 - 69,693,099 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01773,495,475 - 73,521,932 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01767,538,462 - 67,564,923 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01769,835,338 - 69,862,093 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1769,835,330 - 69,862,110 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01771,538,483 - 71,565,238 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41777,341,133 - 77,367,689 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11777,352,006 - 77,428,271 (-)NCBI
Celera1765,696,635 - 65,722,901 (-)NCBICelera
Cytogenetic Map17q12.2NCBI

Variants

.
Variants in AKR1C4
277 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001038626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021064068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002336114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB115919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB527066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEMK02000074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF473815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK233519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK236062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK236723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK238454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK347824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK347833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK348430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK398162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK398224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY863054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU928586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU972427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ494489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01031487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LT594964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSSCT00000093260   ⟹   ENSSSCP00000076632
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1065,559,698 - 65,572,834 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000098087   ⟹   ENSSSCP00000078818
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1065,559,508 - 65,572,895 (+)Ensembl
RefSeq Acc Id: NM_001038626   ⟹   NP_001033715
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11065,559,508 - 65,572,892 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021064068   ⟹   XP_020919727
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11065,559,778 - 65,572,840 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002336114
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11065,559,513 - 65,572,840 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001033715   ⟸   NM_001038626
- UniProtKB: A0A8D0NQB7 (UniProtKB/TrEMBL),   Q1KLB1 (UniProtKB/TrEMBL),   Q2TJA5 (UniProtKB/TrEMBL),   A0A480JHS0 (UniProtKB/TrEMBL),   A0A8D1CTR5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919727   ⟸   XM_021064068
- Peptide Label: isoform X1
- UniProtKB: A0A8D1NHD3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000076632   ⟸   ENSSSCT00000093260
RefSeq Acc Id: ENSSSCP00000078818   ⟸   ENSSSCT00000098087

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000063387 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015040227 UniProtKB/TrEMBL
  ENSSSCG00035037179 UniProtKB/TrEMBL
  ENSSSCG00040028431 UniProtKB/TrEMBL
  ENSSSCG00050068376 UniProtKB/TrEMBL
  ENSSSCG00065066501 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000093260.1 UniProtKB/TrEMBL
  ENSSSCT00000098087 ENTREZGENE
  ENSSSCT00000098087.1 UniProtKB/TrEMBL
  ENSSSCT00015055933.1 UniProtKB/TrEMBL
  ENSSSCT00035049377.1 UniProtKB/TrEMBL
  ENSSSCT00040038128.1 UniProtKB/TrEMBL
  ENSSSCT00040038248.1 UniProtKB/TrEMBL
  ENSSSCT00040038452.1 UniProtKB/TrEMBL
  ENSSSCT00040038565.1 UniProtKB/TrEMBL
  ENSSSCT00040038613.1 UniProtKB/TrEMBL
  ENSSSCT00050093307.1 UniProtKB/TrEMBL
  ENSSSCT00065091530.1 UniProtKB/TrEMBL
Gene3D-CATH 3.20.20.100 UniProtKB/TrEMBL
InterPro AKR1C UniProtKB/TrEMBL
  Aldo/ket_reductase_CS UniProtKB/TrEMBL
  Aldo/keto_reductase UniProtKB/TrEMBL
  NADP_OxRdtase_dom UniProtKB/TrEMBL
  NADP_OxRdtase_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:654406 UniProtKB/TrEMBL
NCBI Gene AKR1C4 ENTREZGENE
PANTHER ALDO-KETO REDUCTASE FAMILY 1 MEMBER C15 UniProtKB/TrEMBL
  ALDO-KETO REDUCTASE FAMILY 1 MEMBER C4 UniProtKB/TrEMBL
  ALDO/KETO REDUCTASE UniProtKB/TrEMBL
Pfam Aldo_ket_red UniProtKB/TrEMBL
PIRSF AKR UniProtKB/TrEMBL
PRINTS ALDKETRDTASE UniProtKB/TrEMBL
PROSITE ALDOKETO_REDUCTASE_1 UniProtKB/TrEMBL
  ALDOKETO_REDUCTASE_2 UniProtKB/TrEMBL
  ALDOKETO_REDUCTASE_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF51430 UniProtKB/TrEMBL
UniProt A0A480JHS0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0NQB7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1CTR5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1E2B9_PIG UniProtKB/TrEMBL
  A0A8D1E2R3_PIG UniProtKB/TrEMBL
  A0A8D1E4D2_PIG UniProtKB/TrEMBL
  A0A8D1E518_PIG UniProtKB/TrEMBL
  A0A8D1NHD3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FBI8_PIG UniProtKB/TrEMBL
  Q1HE49_PIG UniProtKB/TrEMBL
  Q1KLB1 ENTREZGENE
  Q2TJA5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q1KLB1 UniProtKB/TrEMBL