NMT2 (N-myristoyltransferase 2) - Rat Genome Database

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Gene: NMT2 (N-myristoyltransferase 2) Sus scrofa
Analyze
Symbol: NMT2
Name: N-myristoyltransferase 2
RGD ID: 13888850
Description: ENCODES a protein that exhibits acyltransferase activity (inferred); glycylpeptide N-tetradecanoyltransferase activity (inferred); myristoyltransferase activity (inferred); ASSOCIATED WITH genetic disease (ortholog); hypoparathyroidism-deafness-renal disease syndrome (ortholog); ovarian cyst (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); Golgi apparatus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glycylpeptide N-tetradecanoyltransferase 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1046,647,179 - 46,722,518 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11046,647,167 - 46,722,519 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21051,413,843 - 51,452,192 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:15265077   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NMT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1046,647,179 - 46,722,518 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11046,647,167 - 46,722,519 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21051,413,843 - 51,452,192 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NMT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381015,105,700 - 15,168,693 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1015,102,584 - 15,168,693 (-)EnsemblGRCh38hg38GRCh38
GRCh371015,147,769 - 15,210,692 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361015,187,777 - 15,250,701 (-)NCBINCBI36Build 36hg18NCBI36
Build 341015,189,908 - 15,250,663NCBI
Celera1015,076,403 - 15,139,333 (-)NCBICelera
Cytogenetic Map10p13NCBI
HuRef1015,057,910 - 15,120,095 (-)NCBIHuRef
CHM1_11015,147,883 - 15,211,224 (-)NCBICHM1_1
T2T-CHM13v2.01015,119,744 - 15,183,186 (-)NCBIT2T-CHM13v2.0
Nmt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3923,285,249 - 3,329,914 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl23,285,249 - 3,329,914 (+)EnsemblGRCm39 Ensembl
GRCm3823,284,212 - 3,328,877 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl23,284,212 - 3,328,877 (+)EnsemblGRCm38mm10GRCm38
MGSCv3723,201,560 - 3,243,641 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3623,201,560 - 3,243,641 (+)NCBIMGSCv36mm8
Celera23,236,029 - 3,278,108 (+)NCBICelera
Cytogenetic Map2A1NCBI
cM Map21.84NCBI
Nmt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81779,826,999 - 79,874,088 (-)NCBIGRCr8
mRatBN7.21774,917,833 - 74,964,788 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1774,917,833 - 74,961,080 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1778,387,298 - 78,427,998 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01782,222,677 - 82,263,377 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01776,270,622 - 76,311,323 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01778,919,235 - 78,966,013 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1778,921,793 - 78,962,476 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01780,562,797 - 80,603,205 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41786,039,838 - 86,080,243 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11786,050,670 - 86,091,076 (-)NCBI
Celera1774,299,989 - 74,340,407 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
Nmt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542919,282,568 - 19,356,322 (+)NCBIChiLan1.0ChiLan1.0
NMT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2827,945,852 - 28,009,310 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11027,949,828 - 28,014,637 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01015,420,625 - 15,485,107 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11015,703,478 - 15,738,643 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1015,703,478 - 15,765,434 (-)Ensemblpanpan1.1panPan2
NMT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1221,569,692 - 21,609,585 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl221,556,246 - 21,609,325 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha218,655,969 - 18,722,862 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0221,843,939 - 21,910,835 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl221,843,885 - 21,910,598 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1219,044,352 - 19,111,422 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0219,879,441 - 19,946,308 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0220,506,014 - 20,572,902 (+)NCBIUU_Cfam_GSD_1.0
Nmt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934416,153,648 - 16,198,536 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365745,651,758 - 5,698,033 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365745,653,153 - 5,698,027 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NMT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1915,081,828 - 15,145,935 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl915,080,787 - 15,145,899 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605120,627,625 - 20,708,754 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nmt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624805408,378 - 457,887 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NMT2
4099 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 8 2 3 5 1 23 2 3 3
Below cutoff 2 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000022429   ⟹   ENSSSCP00000027420
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1046,647,179 - 46,722,518 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000045566   ⟹   ENSSSCP00000052112
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1046,593,611 - 46,719,063 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000066012   ⟹   ENSSSCP00000043056
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1046,647,271 - 46,720,848 (+)Ensembl
RefSeq Acc Id: XM_021064836   ⟹   XP_020920495
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11046,647,190 - 46,720,980 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021064837   ⟹   XP_020920496
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11046,647,167 - 46,722,519 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002336349
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11046,647,191 - 46,718,744 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002336350
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11046,647,186 - 46,719,065 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002336351
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11046,647,186 - 46,720,980 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020920496   ⟸   XM_021064837
- Peptide Label: isoform X2
- UniProtKB: A0A4X1U5I9 (UniProtKB/TrEMBL),   I3LTH3 (UniProtKB/TrEMBL),   A0A8D1TUG9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020920495   ⟸   XM_021064836
- Peptide Label: isoform X1
- UniProtKB: A0A8D1XNN5 (UniProtKB/TrEMBL),   A0A8D1TUG9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000052112   ⟸   ENSSSCT00000045566
RefSeq Acc Id: ENSSSCP00000027420   ⟸   ENSSSCT00000022429
RefSeq Acc Id: ENSSSCP00000043056   ⟸   ENSSSCT00000066012
Protein Domains
Glycylpeptide N-tetradecanoyltransferase C-terminal   Glycylpeptide N-tetradecanoyltransferase N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000026499 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015057338 UniProtKB/TrEMBL
  ENSSSCG00025032591 UniProtKB/TrEMBL
  ENSSSCG00030028048 UniProtKB/TrEMBL
  ENSSSCG00045028715 UniProtKB/TrEMBL
  ENSSSCG00050002709 UniProtKB/TrEMBL
  ENSSSCG00055003345 UniProtKB/TrEMBL
  ENSSSCG00065016159 UniProtKB/TrEMBL
  ENSSSCG00070014728 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000022429 ENTREZGENE
  ENSSSCT00000022429.4 UniProtKB/TrEMBL
  ENSSSCT00015077059.1 UniProtKB/TrEMBL
  ENSSSCT00025044341.1 UniProtKB/TrEMBL
  ENSSSCT00025044631.1 UniProtKB/TrEMBL
  ENSSSCT00030039231.1 UniProtKB/TrEMBL
  ENSSSCT00030039242.1 UniProtKB/TrEMBL
  ENSSSCT00030039256.1 UniProtKB/TrEMBL
  ENSSSCT00045049068.1 UniProtKB/TrEMBL
  ENSSSCT00045049181.1 UniProtKB/TrEMBL
  ENSSSCT00045049343.1 UniProtKB/TrEMBL
  ENSSSCT00050003438.1 UniProtKB/TrEMBL
  ENSSSCT00050003455.1 UniProtKB/TrEMBL
  ENSSSCT00050003461.1 UniProtKB/TrEMBL
  ENSSSCT00055006553.1 UniProtKB/TrEMBL
  ENSSSCT00055006564.1 UniProtKB/TrEMBL
  ENSSSCT00055006594.1 UniProtKB/TrEMBL
  ENSSSCT00065021426.1 UniProtKB/TrEMBL
  ENSSSCT00065021434.1 UniProtKB/TrEMBL
  ENSSSCT00070028910.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.630.170 UniProtKB/TrEMBL
InterPro Acyl_CoA_acyltransferase UniProtKB/TrEMBL
  MyristoylCoA_TrFase UniProtKB/TrEMBL
  MyristoylCoA_TrFase_C UniProtKB/TrEMBL
  MyristoylCoA_TrFase_CS UniProtKB/TrEMBL
  MyristoylCoA_TrFase_N UniProtKB/TrEMBL
NCBI Gene NMT2 ENTREZGENE
PANTHER GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE 2 UniProtKB/TrEMBL
  PTHR11377 UniProtKB/TrEMBL
Pfam NMT UniProtKB/TrEMBL
  NMT_C UniProtKB/TrEMBL
PIRSF N-myristl_transf UniProtKB/TrEMBL
PROSITE NMT_1 UniProtKB/TrEMBL
  NMT_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF55729 UniProtKB/TrEMBL
UniProt A0A4X1U5I9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1JPC3_PIG UniProtKB/TrEMBL
  A0A8D1L4Q0_PIG UniProtKB/TrEMBL
  A0A8D1PF34_PIG UniProtKB/TrEMBL
  A0A8D1PKP8_PIG UniProtKB/TrEMBL
  A0A8D1TUG9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1XNN5 ENTREZGENE, UniProtKB/TrEMBL
  I3LTH3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:96448 ENTREZGENE