LANCL2 (LanC like glutathione S-transferase 2) - Rat Genome Database

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Gene: LANCL2 (LanC like glutathione S-transferase 2) Sus scrofa
Analyze
Symbol: LANCL2
Name: LanC like glutathione S-transferase 2
RGD ID: 13888770
Description: ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (inferred); phosphatidylinositol-4-phosphate binding (inferred); phosphatidylinositol-5-phosphate binding (inferred); INVOLVED IN carbohydrate metabolic process (inferred); negative regulation of DNA-templated transcription (inferred); peptide modification (inferred); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cortical actin cytoskeleton (inferred); cytosol (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LanC like 2; lanC-like protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1848,550,944 - 48,593,455 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11848,550,752 - 48,593,055 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LANCL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1848,550,944 - 48,593,455 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11848,550,752 - 48,593,055 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LANCL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38755,365,337 - 55,433,737 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl755,365,337 - 55,433,737 (+)EnsemblGRCh38hg38GRCh38
GRCh37755,433,030 - 55,501,430 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36755,400,635 - 55,468,929 (+)NCBINCBI36Build 36hg18NCBI36
Build 34755,207,349 - 55,275,644NCBI
Celera755,536,348 - 55,604,629 (+)NCBICelera
Cytogenetic Map7p11.2NCBI
HuRef755,268,359 - 55,336,642 (+)NCBIHuRef
CHM1_1755,435,807 - 55,504,119 (+)NCBICHM1_1
T2T-CHM13v2.0755,525,667 - 55,594,061 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2755,437,426 - 55,505,717 (+)NCBI
Lancl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39657,679,440 - 57,716,434 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl657,679,525 - 57,716,424 (+)EnsemblGRCm39 Ensembl
GRCm38657,702,455 - 57,739,449 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl657,702,540 - 57,739,439 (+)EnsemblGRCm38mm10GRCm38
MGSCv37657,652,449 - 57,689,443 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36657,632,214 - 57,668,060 (+)NCBIMGSCv36mm8
Celera658,446,120 - 58,483,175 (+)NCBICelera
Cytogenetic Map6B3NCBI
cM Map627.82NCBI
Lancl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8488,771,974 - 88,813,920 (-)NCBIGRCr8
mRatBN7.2487,441,821 - 87,483,707 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl487,441,823 - 87,482,800 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx492,665,021 - 92,704,609 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0488,440,426 - 88,480,014 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0486,803,501 - 86,843,013 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0488,524,212 - 88,565,113 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl488,525,695 - 88,565,292 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04153,346,850 - 153,387,979 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4487,197,364 - 87,236,803 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1487,439,372 - 87,480,274 (-)NCBI
Celera482,209,185 - 82,248,518 (-)NCBICelera
Cytogenetic Map4q24NCBI
Lancl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955456204,434 - 229,371 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955456204,434 - 250,143 (-)NCBIChiLan1.0ChiLan1.0
LANCL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2660,198,037 - 60,264,349 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17108,522,754 - 108,589,074 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0755,958,850 - 56,025,166 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1756,268,426 - 56,335,549 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl756,268,426 - 56,335,549 (+)Ensemblpanpan1.1panPan2
LANCL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1186,131,536 - 6,237,232 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl186,197,989 - 6,234,856 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha186,035,458 - 6,082,375 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0186,232,306 - 6,279,253 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl186,231,806 - 6,280,793 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1186,222,155 - 6,269,095 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0186,196,304 - 6,243,241 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0186,302,518 - 6,349,674 (+)NCBIUU_Cfam_GSD_1.0
Lancl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118109,623,089 - 109,672,284 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936678219,991 - 265,627 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936678217,272 - 268,780 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LANCL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1213,435,435 - 3,503,802 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl213,434,909 - 3,501,335 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606219,087,225 - 19,155,311 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lancl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624740485,874 - 514,638 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624740487,173 - 514,484 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LANCL2
1702 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 4
Low 10 4 3 5 2 19 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000032270   ⟹   ENSSSCP00000024018
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1848,557,855 - 48,588,826 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000044577   ⟹   ENSSSCP00000046065
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1848,550,944 - 48,593,455 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000045186   ⟹   ENSSSCP00000040515
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1848,558,760 - 48,590,365 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000059496   ⟹   ENSSSCP00000038014
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1848,552,782 - 48,588,815 (+)Ensembl
RefSeq Acc Id: XM_021079342   ⟹   XP_020935001
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11848,550,752 - 48,593,055 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021079343   ⟹   XP_020935002
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11848,557,601 - 48,593,055 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021079344   ⟹   XP_020935003
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11848,550,752 - 48,590,367 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020935001   ⟸   XM_021079342
- Peptide Label: isoform X1
- UniProtKB: A0A287AQ33 (UniProtKB/TrEMBL),   A0A8D1PPR2 (UniProtKB/TrEMBL),   A0A8D0UH74 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935003   ⟸   XM_021079344
- Peptide Label: isoform X3
- UniProtKB: A0A8D1AX74 (UniProtKB/TrEMBL),   A0A480PU73 (UniProtKB/TrEMBL),   A0A8D1MUM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935002   ⟸   XM_021079343
- Peptide Label: isoform X2
- UniProtKB: A0A8D1B0S3 (UniProtKB/TrEMBL),   A0A8D2A1P5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000046065   ⟸   ENSSSCT00000044577
RefSeq Acc Id: ENSSSCP00000038014   ⟸   ENSSSCT00000059496
RefSeq Acc Id: ENSSSCP00000040515   ⟸   ENSSSCT00000045186
RefSeq Acc Id: ENSSSCP00000024018   ⟸   ENSSSCT00000032270


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000023801 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025008761 UniProtKB/TrEMBL
  ENSSSCG00030045357 UniProtKB/TrEMBL
  ENSSSCG00035069235 UniProtKB/TrEMBL
  ENSSSCG00040059780 UniProtKB/TrEMBL
  ENSSSCG00045031316 UniProtKB/TrEMBL
  ENSSSCG00050046582 UniProtKB/TrEMBL
  ENSSSCG00055005928 UniProtKB/TrEMBL
  ENSSSCG00060001071 UniProtKB/TrEMBL
  ENSSSCG00065074619 UniProtKB/TrEMBL
  ENSSSCG00070014861 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000044577 ENTREZGENE
  ENSSSCT00000044577.3 UniProtKB/TrEMBL
  ENSSSCT00000045186 ENTREZGENE
  ENSSSCT00000045186.3 UniProtKB/TrEMBL
  ENSSSCT00025011645.1 UniProtKB/TrEMBL
  ENSSSCT00025011663.1 UniProtKB/TrEMBL
  ENSSSCT00025011708.1 UniProtKB/TrEMBL
  ENSSSCT00025011741.1 UniProtKB/TrEMBL
  ENSSSCT00025011766.1 UniProtKB/TrEMBL
  ENSSSCT00030063345.1 UniProtKB/TrEMBL
  ENSSSCT00030063363.1 UniProtKB/TrEMBL
  ENSSSCT00030063391.1 UniProtKB/TrEMBL
  ENSSSCT00030063419.1 UniProtKB/TrEMBL
  ENSSSCT00030063436.1 UniProtKB/TrEMBL
  ENSSSCT00035093487.1 UniProtKB/TrEMBL
  ENSSSCT00035093505.1 UniProtKB/TrEMBL
  ENSSSCT00035093539.1 UniProtKB/TrEMBL
  ENSSSCT00035093557.1 UniProtKB/TrEMBL
  ENSSSCT00040081396.1 UniProtKB/TrEMBL
  ENSSSCT00040081512.1 UniProtKB/TrEMBL
  ENSSSCT00040081617.1 UniProtKB/TrEMBL
  ENSSSCT00040081725.1 UniProtKB/TrEMBL
  ENSSSCT00040081799.1 UniProtKB/TrEMBL
  ENSSSCT00040081865.1 UniProtKB/TrEMBL
  ENSSSCT00040081942.1 UniProtKB/TrEMBL
  ENSSSCT00045053384.1 UniProtKB/TrEMBL
  ENSSSCT00045053555.1 UniProtKB/TrEMBL
  ENSSSCT00045053672.1 UniProtKB/TrEMBL
  ENSSSCT00045053777.1 UniProtKB/TrEMBL
  ENSSSCT00050063405.1 UniProtKB/TrEMBL
  ENSSSCT00050063415.1 UniProtKB/TrEMBL
  ENSSSCT00055011558.1 UniProtKB/TrEMBL
  ENSSSCT00055011603.1 UniProtKB/TrEMBL
  ENSSSCT00055011648.1 UniProtKB/TrEMBL
  ENSSSCT00055011703.1 UniProtKB/TrEMBL
  ENSSSCT00055011771.1 UniProtKB/TrEMBL
  ENSSSCT00060001278.1 UniProtKB/TrEMBL
  ENSSSCT00060001279.1 UniProtKB/TrEMBL
  ENSSSCT00060001281.1 UniProtKB/TrEMBL
  ENSSSCT00060001285.1 UniProtKB/TrEMBL
  ENSSSCT00065102817.1 UniProtKB/TrEMBL
  ENSSSCT00065102841.1 UniProtKB/TrEMBL
  ENSSSCT00065102888.1 UniProtKB/TrEMBL
  ENSSSCT00070029195.1 UniProtKB/TrEMBL
  ENSSSCT00070029208.1 UniProtKB/TrEMBL
  ENSSSCT00070029221.1 UniProtKB/TrEMBL
  ENSSSCT00070029224.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.10.10 UniProtKB/TrEMBL
InterPro 6hp_glycosidase-like_sf UniProtKB/TrEMBL
  LANC-like UniProtKB/TrEMBL
  LanC-like_prot_euk UniProtKB/TrEMBL
NCBI Gene LANCL2 ENTREZGENE
PANTHER LANC-LIKE PROTEIN UniProtKB/TrEMBL
  LANC-LIKE PROTEIN 2 UniProtKB/TrEMBL
Pfam LANC_like UniProtKB/TrEMBL
PRINTS LANCEUKARYTE UniProtKB/TrEMBL
  LANCSUPER UniProtKB/TrEMBL
SMART LANC_like UniProtKB/TrEMBL
Superfamily-SCOP LanC-like UniProtKB/TrEMBL
UniProt A0A287A9G0_PIG UniProtKB/TrEMBL
  A0A287AQ33 ENTREZGENE, UniProtKB/TrEMBL
  A0A480PU73 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U3U0_PIG UniProtKB/TrEMBL
  A0A4X1U681_PIG UniProtKB/TrEMBL
  A0A4X1U886_PIG UniProtKB/TrEMBL
  A0A4X1U8Y0_PIG UniProtKB/TrEMBL
  A0A8D0UH74 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0X092_PIG UniProtKB/TrEMBL
  A0A8D0X0C3_PIG UniProtKB/TrEMBL
  A0A8D0X0J5_PIG UniProtKB/TrEMBL
  A0A8D0X3B0_PIG UniProtKB/TrEMBL
  A0A8D1AX74 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1B0S3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1FB14_PIG UniProtKB/TrEMBL
  A0A8D1FFM6_PIG UniProtKB/TrEMBL
  A0A8D1IR94_PIG UniProtKB/TrEMBL
  A0A8D1IRX4_PIG UniProtKB/TrEMBL
  A0A8D1IZH0_PIG UniProtKB/TrEMBL
  A0A8D1KGS5_PIG UniProtKB/TrEMBL
  A0A8D1KGW4_PIG UniProtKB/TrEMBL
  A0A8D1KH97_PIG UniProtKB/TrEMBL
  A0A8D1KHC2_PIG UniProtKB/TrEMBL
  A0A8D1MUM2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PNL6_PIG UniProtKB/TrEMBL
  A0A8D1PNQ7_PIG UniProtKB/TrEMBL
  A0A8D1PPR2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PXQ9_PIG UniProtKB/TrEMBL
  A0A8D1SG66_PIG UniProtKB/TrEMBL
  A0A8D2A1P5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2A1P6_PIG UniProtKB/TrEMBL
UniProt Secondary I3LIW1 UniProtKB/TrEMBL
VGNC ID VGNC:89633 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-20 LANCL2  LanC like glutathione S-transferase 2  LANCL2  LanC like 2  Symbol and/or name change 19259463 PROVISIONAL