STK38 (serine/threonine kinase 38) - Rat Genome Database

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Gene: STK38 (serine/threonine kinase 38) Sus scrofa
Analyze
Symbol: STK38
Name: serine/threonine kinase 38
RGD ID: 13888711
Description: ENCODES a protein that exhibits histone reader activity (ortholog); UFM1-modified protein reader activity (ortholog); INVOLVED IN DNA damage checkpoint signaling (ortholog); DNA damage response (ortholog); postsynapse organization (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); genetic disease (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN glutamatergic synapse (ortholog); site of double-strand break (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/threonine-protein kinase 38
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl732,206,541 - 32,253,624 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1732,206,532 - 32,253,673 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2737,107,044 - 37,154,525 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
STK38
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl732,206,541 - 32,253,624 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1732,206,532 - 32,253,673 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2737,107,044 - 37,154,525 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STK38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38636,493,892 - 36,547,479 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl636,493,892 - 36,547,479 (-)EnsemblGRCh38hg38GRCh38
GRCh37636,461,669 - 36,515,256 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36636,569,647 - 36,623,225 (-)NCBINCBI36Build 36hg18NCBI36
Build 34636,569,647 - 36,623,225NCBI
Celera638,016,709 - 38,070,290 (-)NCBICelera
Cytogenetic Map6p21.31NCBI
HuRef636,180,534 - 36,234,118 (-)NCBIHuRef
CHM1_1636,463,467 - 36,517,045 (-)NCBICHM1_1
T2T-CHM13v2.0636,314,555 - 36,368,143 (-)NCBIT2T-CHM13v2.0
Stk38
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391729,189,854 - 29,226,979 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1729,189,854 - 29,226,969 (-)EnsemblGRCm39 Ensembl
GRCm381728,970,880 - 29,008,010 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1728,970,880 - 29,007,995 (-)EnsemblGRCm38mm10GRCm38
MGSCv371729,107,830 - 29,144,882 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361728,698,474 - 28,735,604 (-)NCBIMGSCv36mm8
Celera1729,526,832 - 29,564,008 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1715.03NCBI
Stk38
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8207,035,923 - 7,070,657 (-)NCBIGRCr8
mRatBN7.2207,034,245 - 7,067,803 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl207,034,242 - 7,068,198 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx207,746,129 - 7,779,641 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0207,107,989 - 7,141,501 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0207,582,947 - 7,616,454 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0206,224,300 - 6,257,613 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl206,224,296 - 6,257,604 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0208,472,801 - 8,506,196 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4207,257,546 - 7,264,441 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1207,257,777 - 7,264,668 (-)NCBI
Celera208,585,884 - 8,592,779 (-)NCBICelera
Cytogenetic Map20p12NCBI
Stk38
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554374,142,285 - 4,186,373 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554374,142,285 - 4,186,376 (-)NCBIChiLan1.0ChiLan1.0
STK38
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2550,963,053 - 51,016,986 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1646,832,690 - 46,886,644 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0636,056,585 - 36,110,531 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1637,255,183 - 37,308,102 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl637,255,183 - 37,308,102 (-)Ensemblpanpan1.1panPan2
STK38
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1125,594,090 - 5,636,581 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl125,595,840 - 5,636,692 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha125,613,974 - 5,655,643 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0125,942,106 - 5,984,662 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl125,942,112 - 5,984,782 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1125,597,466 - 5,640,022 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0125,675,922 - 5,718,477 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0125,775,775 - 5,817,428 (-)NCBIUU_Cfam_GSD_1.0
Stk38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494641,069,180 - 41,117,761 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647622,842,477 - 22,891,057 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647622,842,477 - 22,891,057 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STK38
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11735,587,246 - 35,641,555 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1735,587,256 - 35,642,279 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604436,437,565 - 36,491,888 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stk38
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475421,227,417 - 21,271,964 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475421,220,121 - 21,271,065 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in STK38
903 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 6 2 5 2 3
Low 4 2 3 2 23 2 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000001742   ⟹   ENSSSCP00000001698
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl732,208,419 - 32,253,615 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000065030   ⟹   ENSSSCP00000045596
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl732,206,541 - 32,253,624 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000093853   ⟹   ENSSSCP00000081131
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl732,231,095 - 32,253,450 (-)Ensembl
RefSeq Acc Id: XM_001929552   ⟹   XP_001929587
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1732,206,532 - 32,253,673 (-)NCBI
Sequence:
RefSeq Acc Id: XP_001929587   ⟸   XM_001929552
- UniProtKB: F1RY93 (UniProtKB/TrEMBL),   A0A4X1SUS9 (UniProtKB/TrEMBL),   A0A0B8RS83 (UniProtKB/TrEMBL),   A0A8D0Y9Q5 (UniProtKB/TrEMBL),   A0A8D1YB09 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000001698   ⟸   ENSSSCT00000001742
RefSeq Acc Id: ENSSSCP00000045596   ⟸   ENSSSCT00000065030
RefSeq Acc Id: ENSSSCP00000081131   ⟸   ENSSSCT00000093853

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001563 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005028950 UniProtKB/TrEMBL
  ENSSSCG00015055237 UniProtKB/TrEMBL
  ENSSSCG00025007511 UniProtKB/TrEMBL
  ENSSSCG00030071206 UniProtKB/TrEMBL
  ENSSSCG00035008418 UniProtKB/TrEMBL
  ENSSSCG00040015168 UniProtKB/TrEMBL
  ENSSSCG00045028705 UniProtKB/TrEMBL
  ENSSSCG00055010490 UniProtKB/TrEMBL
  ENSSSCG00060078340 UniProtKB/TrEMBL
  ENSSSCG00065032251 UniProtKB/TrEMBL
  ENSSSCG00070003854 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000001742.5 UniProtKB/TrEMBL
  ENSSSCT00000065030 ENTREZGENE
  ENSSSCT00000065030.2 UniProtKB/TrEMBL
  ENSSSCT00000093853.1 UniProtKB/TrEMBL
  ENSSSCT00005046299.1 UniProtKB/TrEMBL
  ENSSSCT00005046319.1 UniProtKB/TrEMBL
  ENSSSCT00015073597.1 UniProtKB/TrEMBL
  ENSSSCT00025009985.1 UniProtKB/TrEMBL
  ENSSSCT00030099630.1 UniProtKB/TrEMBL
  ENSSSCT00030099656.1 UniProtKB/TrEMBL
  ENSSSCT00035010515.1 UniProtKB/TrEMBL
  ENSSSCT00035010519.1 UniProtKB/TrEMBL
  ENSSSCT00040020406.1 UniProtKB/TrEMBL
  ENSSSCT00040020415.1 UniProtKB/TrEMBL
  ENSSSCT00045049325.1 UniProtKB/TrEMBL
  ENSSSCT00045049468.1 UniProtKB/TrEMBL
  ENSSSCT00055020534.1 UniProtKB/TrEMBL
  ENSSSCT00055020566.1 UniProtKB/TrEMBL
  ENSSSCT00060108178.1 UniProtKB/TrEMBL
  ENSSSCT00065043728.1 UniProtKB/TrEMBL
  ENSSSCT00065043736.1 UniProtKB/TrEMBL
  ENSSSCT00070007259.1 UniProtKB/TrEMBL
  ENSSSCT00070007267.1 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro AGC-kinase_C UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  Pkinase_C UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
KEGG Report ssc:100153410 UniProtKB/TrEMBL
NCBI Gene STK38 ENTREZGENE
PANTHER SERINE/THREONINE-PROTEIN KINASE UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN KINASE 38 UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
  Pkinase_C UniProtKB/TrEMBL
PROSITE AGC_KINASE_CTER UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TK_X UniProtKB/TrEMBL
  S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A0B8RS83 ENTREZGENE
  A0A4X1SUS9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SUT6_PIG UniProtKB/TrEMBL
  A0A8D0Y9Q5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1CKY8_PIG UniProtKB/TrEMBL
  A0A8D1YB09 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FRC0_PIG UniProtKB/TrEMBL
  F1RY93 ENTREZGENE, UniProtKB/TrEMBL
  Q700R2_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287ANE9 UniProtKB/TrEMBL
VGNC ID VGNC:93556 ENTREZGENE