MRPL38 (mitochondrial ribosomal protein L38)

Gene: MRPL38 (mitochondrial ribosomal protein L38) Sus scrofa

Analyze

Symbol:

MRPL38

Name:

mitochondrial ribosomal protein L38

RGD ID:

13886161

Description:

ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytosol (inferred); mitochondrial large ribosomal subunit (inferred); mitochondrion (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

39S ribosomal protein L38, mitochondrial; 39S ribosomal protein L38, mitochondrial-like

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	5,514,415 - 5,521,664 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	5,514,420 - 5,521,671 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	5,428,283 - 5,435,397 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytosol (IEA)

mitochondrial large ribosomal subunit (IBA,IEA)

mitochondrion (IEA)

ribosome (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

MRPL38
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	5,514,415 - 5,521,664 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	5,514,420 - 5,521,671 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	5,428,283 - 5,435,397 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MRPL38
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	75,898,644 - 75,904,884 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	75,898,644 - 75,905,093 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	73,894,725 - 73,900,965 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	71,406,319 - 71,413,069 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	71,406,318 - 71,413,069	NCBI
Celera	17	70,484,775 - 70,491,232 (-)	NCBI		Celera
Cytogenetic Map	17	q25.1	NCBI
HuRef	17	69,320,370 - 69,326,827 (-)	NCBI		HuRef
CHM1_1	17	73,959,667 - 73,966,120 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	76,791,796 - 76,798,036 (-)	NCBI		T2T-CHM13v2.0

Mrpl38
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	116,022,643 - 116,029,694 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	116,022,643 - 116,029,694 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	116,131,817 - 116,138,868 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	116,131,817 - 116,138,868 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	115,993,131 - 116,000,182 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	115,947,911 - 115,954,870 (-)	NCBI		MGSCv36	mm8
Celera	11	127,895,077 - 127,902,124 (-)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	80.91	NCBI

Mrpl38
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	101,864,242 - 101,871,048 (-)	NCBI		GRCr8
mRatBN7.2	10	101,365,353 - 101,372,159 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	101,365,353 - 101,372,171 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	106,426,832 - 106,434,716 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	105,889,928 - 105,897,812 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	101,286,272 - 101,293,078 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	104,682,372 - 104,691,357 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	104,682,374 - 104,689,178 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	103,596,443 - 103,603,249 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	106,238,696 - 106,245,499 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	106,253,199 - 106,260,003 (-)	NCBI
Celera	10	99,938,748 - 99,945,554 (-)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

Mrpl38
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955506	6,354,994 - 6,361,607 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955506	6,355,861 - 6,361,107 (+)	NCBI	ChiLan1.0	ChiLan1.0

MRPL38
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	91,942,844 - 91,949,396 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	96,767,548 - 96,774,050 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	69,847,907 - 69,854,329 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	75,399,384 - 75,405,874 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	75,399,384 - 75,405,910 (-)	Ensembl	panpan1.1		panPan2

MRPL38
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	4,706,447 - 4,712,442 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	4,706,529 - 4,712,324 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	5,386,895 - 5,392,899 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	5,376,854 - 5,382,926 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	5,376,900 - 5,382,934 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	5,416,705 - 5,422,715 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	5,526,332 - 5,532,338 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	5,586,827 - 5,592,913 (+)	NCBI		UU_Cfam_GSD_1.0

Mrpl38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	5,328,986 - 5,333,812 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936594	1,077,364 - 1,083,006 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936594	1,078,147 - 1,082,921 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MRPL38
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	45,788,374 - 45,790,155 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666077	16,535,017 - 16,541,826 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mrpl38
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	5,784,992 - 5,789,839 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624801	5,784,992 - 5,789,871 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in MRPL38
253 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium				1	1		2
Low	10	4	3	4	1	23		3	3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003131188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK391679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU928029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01019982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000018721 ⟹ ENSSSCP00000018219

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	12	5,514,415 - 5,521,664 (+)	Ensembl

RefSeq Acc Id:

XM_003131188 ⟹ XP_003131236

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	5,514,420 - 5,521,671 (+)	NCBI

Sequence:

show sequence

GGCCAGCTCTGGCCTGGAGGCAGGAGCTCGTGGATTCCGGGAAGGTCTTGGGGCTTGAGTGGGG
GCGGGGCTTTAGGGCTCGGGGCGGGGCTTTAGGGCTCGGGGCGGGGCCTGCGCCGTGCGCTCAG
GCGCGGCTCCGGCCACCTCTGCCGGGTCCTGCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG
GCCTGAGCGAAGATGGCGGCGCCCTGGTGGCGAGCCGCGCTGTGCGCAAGTCGGCGGTGGCGGG
GCTTCAGCACCTCAGCCGCCCTGAGCCGCCGGGCCGCTCCGCTGGGGCCGATGCCCAACGAGGA
CATCGATGTGAGCGACCTAGAGCGACTGAAGAAGTACCGCAGCTTCGACCGCTACCGGCGCCGG
GCGGAGCAGGAGGCGCGGAAGCCGCATTGGTGGCGGACCTACCGGGAGCATTTCGGGGAGGAGT
CAGGTCCCAAAGACAGGGTGGACATTGGGCTGCCTCCACCCAAGGTCTCTCGGACCCAACAGCT
GTTAGAGCGGAAACAGGCCCTCCGGGAGCTGCGGGCCAACGTGGAGGAGGAGCGAGCTGCTCGC
CTCCAAACAGCCCGCATCCCACTGGAGGCCGTGCGGGCCGAGTGGGAGAGGACCTGTGGCCCCT
ACCACAAGCAGCGTCTGGCCGAGTACTGCGGCCTCTATCGAGACCTGTTCCACGGTGCCACCTT
CGTGCCCCGAGTCCCCCTGCATGTGGCCTACGCCGTAGGTGAGGACGACTTGATGCCTGTGTAT
CATGGCAACGAGGTCACTCCAACAGAGGCTGCCCAGGCCCCGGAGGTGACCTATGAGGCAGACG
AGGGCTCCCTGTGGACCCTGTTGCTCACCAACTTGGATGGACACCTGCTGGAACCAGATGCCGA
GTATGTCCACTGGCTGGTAACCAACATCCCGGGCAACAGGGTGACTGAAGGACAGGAGACGTGT
CCCTACCTCCCTCCCTTCCCTGCCCGAGGCTCCGGTTTCCACCGCTTTGCCTTCCTGCTCTTCA
AGCAGGATAAGCGAATCGACTTCTCTGGGGACACCCGGCCCTCACCCTGCTACCAGCTTGCCCA
GCGGACCTTCCACACTTTCGATTTCTACAAGAAGCACCAAGATGCCATGACTCCGGCTGGCCTG
GCCTTCTTCCAATGCCGCTGGGATGACTCTGTCACCCGCGTCTTCCACCAGCTCCTGGACATGC
GAGAGCCCGTCTTTGAGTTTGTGCGGCCGCCCCCTTATCACCCTAAGCAGAAGCGCTTCCCCCA
CCGGCAGCCCCTGCGCTACCTGGACCGGTACAGAGACAGTCACGAACCCACCTATGGCATCTAC
TGACAGGCCAGAGTGCCACCCACCTCAGAGAGTAGACTGGGCCTCTTGGGCCACCCTGTCAGGC
TCTGCAGGCAGGAGCAATAGAGAAACGAGATACGGGCGCCACGGGGCCAGGCATTGGGGTTCCC
AGCCCTGCCAGAGGCAGGCCCAGAACTTGGAGTGAAGAAGGCTGGGCGGGCTTGGTAGGGAGGT
GTCCTGGAGGCTATGAATAAAGATTTTTGCTGTAGCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003131236	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000018219
	ENSSSCP00000018219.2
	ENSSSCP00015026993.1
	ENSSSCP00025023404.1
	ENSSSCP00030002961.1
	ENSSSCP00030002962.1
	ENSSSCP00030002963.1
	ENSSSCP00035027451.1
	ENSSSCP00040045606.1
	ENSSSCP00045046008.1
	ENSSSCP00050009505.1
	ENSSSCP00055018880.1
	ENSSSCP00060015590.1
	ENSSSCP00065034591.1
	ENSSSCP00070034260.1
	ENSSSCP00070034269.1

RefSeq Acc Id:

XP_003131236 ⟸ XM_003131188

- UniProtKB:

F1RW03 (UniProtKB/TrEMBL), A0A4X1UZD9 (UniProtKB/TrEMBL), A0A8D0U5H7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAPWWRAALCASRRWRGFSTSAALSRRAAPLGPMPNEDIDVSDLERLKKYRSFDRYRRRAEQE
ARKPHWWRTYREHFGEESGPKDRVDIGLPPPKVSRTQQLLERKQALRELRANVEEERAARLQTA
RIPLEAVRAEWERTCGPYHKQRLAEYCGLYRDLFHGATFVPRVPLHVAYAVGEDDLMPVYHGNE
VTPTEAAQAPEVTYEADEGSLWTLLLTNLDGHLLEPDAEYVHWLVTNIPGNRVTEGQETCPYLP
PFPARGSGFHRFAFLLFKQDKRIDFSGDTRPSPCYQLAQRTFHTFDFYKKHQDAMTPAGLAFFQ
CRWDDSVTRVFHQLLDMREPVFEFVRPPPYHPKQKRFPHRQPLRYLDRYRDSHEPTYGIY

hide sequence

RefSeq Acc Id:

ENSSSCP00000018219 ⟸ ENSSSCT00000018721

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000017196	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015050320	UniProtKB/TrEMBL
	ENSSSCG00025040585	UniProtKB/TrEMBL
	ENSSSCG00030004960	UniProtKB/TrEMBL
	ENSSSCG00035050852	UniProtKB/TrEMBL
	ENSSSCG00040073411	UniProtKB/TrEMBL
	ENSSSCG00045037651	UniProtKB/TrEMBL
	ENSSSCG00050016469	UniProtKB/TrEMBL
	ENSSSCG00055012164	UniProtKB/TrEMBL
	ENSSSCG00060027055	UniProtKB/TrEMBL
	ENSSSCG00065058130	UniProtKB/TrEMBL
	ENSSSCG00070020545	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000018721	ENTREZGENE
	ENSSSCT00000018721.5	UniProtKB/TrEMBL
	ENSSSCT00015067406.1	UniProtKB/TrEMBL
	ENSSSCT00025055074.1	UniProtKB/TrEMBL
	ENSSSCT00030006708.1	UniProtKB/TrEMBL
	ENSSSCT00030006711.1	UniProtKB/TrEMBL
	ENSSSCT00030006715.1	UniProtKB/TrEMBL
	ENSSSCT00035067745.1	UniProtKB/TrEMBL
	ENSSSCT00040101284.1	UniProtKB/TrEMBL
	ENSSSCT00045065038.1	UniProtKB/TrEMBL
	ENSSSCT00050022462.1	UniProtKB/TrEMBL
	ENSSSCT00055023864.1	UniProtKB/TrEMBL
	ENSSSCT00060036629.1	UniProtKB/TrEMBL
	ENSSSCT00065079535.1	UniProtKB/TrEMBL
	ENSSSCT00070040827.1	UniProtKB/TrEMBL
	ENSSSCT00070040836.1	UniProtKB/TrEMBL
Gene3D-CATH	3.90.280.10	UniProtKB/TrEMBL
InterPro	PEBP	UniProtKB/TrEMBL
	PEBP-like_sf	UniProtKB/TrEMBL
	PEBP_euk	UniProtKB/TrEMBL
KEGG Report	ssc:100520633	UniProtKB/TrEMBL
NCBI Gene	MRPL38	ENTREZGENE
PANTHER	39S RIBOSOMAL PROTEIN L38, MITOCHONDRIAL	UniProtKB/TrEMBL
	PTHR11362	UniProtKB/TrEMBL
Pfam	PBP	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49777	UniProtKB/TrEMBL
UniProt	A0A4X1UZD9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0K1C8_PIG	UniProtKB/TrEMBL
	A0A8D0U5H7	ENTREZGENE, UniProtKB/TrEMBL
	F1RW03	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:90363	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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