CLMN (calmin) - Rat Genome Database

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Gene: CLMN (calmin) Sus scrofa
Analyze
Symbol: CLMN
Name: calmin
RGD ID: 13885697
Description: ENCODES a protein that exhibits actin binding (inferred); actin filament binding (inferred); INVOLVED IN negative regulation of cell population proliferation (ortholog); neuron projection development (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred); meiotic nuclear membrane microtubule tethering complex (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: calmin (calponin-like, transmembrane)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7116,476,791 - 116,590,265 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17116,476,789 - 116,590,181 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27123,684,763 - 123,805,701 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:12226715   PMID:14681463   PMID:17145712   PMID:17407547   PMID:30032202  


Genomics

Comparative Map Data
CLMN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7116,476,791 - 116,590,265 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17116,476,789 - 116,590,181 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27123,684,763 - 123,805,701 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLMN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381495,181,940 - 95,319,908 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1495,181,940 - 95,319,908 (-)EnsemblGRCh38hg38GRCh38
GRCh371495,648,277 - 95,786,245 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361494,727,618 - 94,855,955 (-)NCBINCBI36Build 36hg18NCBI36
Build 341494,727,617 - 94,855,955NCBI
Celera1475,704,392 - 75,842,388 (-)NCBICelera
Cytogenetic Map14q32.13NCBI
HuRef1475,832,322 - 75,892,735 (-)NCBIHuRef
CHM1_11495,586,508 - 95,724,496 (-)NCBICHM1_1
T2T-CHM13v2.01489,412,156 - 89,550,109 (-)NCBIT2T-CHM13v2.0
Clmn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912104,729,373 - 104,831,335 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12104,729,376 - 104,831,335 (-)EnsemblGRCm39 Ensembl
GRCm3812104,763,114 - 104,865,082 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12104,763,117 - 104,865,076 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712106,001,324 - 106,103,286 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612105,172,807 - 105,266,126 (-)NCBIMGSCv36mm8
Celera12105,993,908 - 106,097,084 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1254.91NCBI
Clmn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86129,470,613 - 129,572,079 (-)NCBIGRCr8
mRatBN7.26123,707,710 - 123,807,283 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6123,713,507 - 123,807,272 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6123,844,782 - 123,937,370 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06124,140,054 - 124,232,635 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06123,513,746 - 123,607,046 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06128,473,592 - 128,567,267 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6128,473,570 - 128,567,198 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06137,670,952 - 137,764,459 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46128,859,942 - 128,954,839 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16128,864,551 - 128,958,576 (-)NCBI
Celera6121,188,986 - 121,223,785 (-)NCBICelera
Cytogenetic Map6q32NCBI
Clmn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543817,258,145 - 17,333,333 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543817,258,145 - 17,335,443 (+)NCBIChiLan1.0ChiLan1.0
CLMN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21596,331,347 - 96,472,667 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11495,547,854 - 95,689,173 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01475,805,572 - 75,946,432 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11495,141,770 - 95,180,329 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1495,141,807 - 95,184,042 (-)Ensemblpanpan1.1panPan2
CLMN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1864,087,259 - 64,142,561 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl864,088,613 - 64,120,756 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha863,665,167 - 63,770,741 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0864,345,543 - 64,460,888 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl864,353,143 - 64,460,865 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1864,020,545 - 64,135,735 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0864,079,395 - 64,194,759 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0864,404,347 - 64,519,672 (-)NCBIUU_Cfam_GSD_1.0
Clmn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864010,345,613 - 10,409,459 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936846633,597 - 662,991 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936846633,560 - 662,945 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLMN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12473,029,029 - 73,166,695 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2473,030,179 - 73,166,627 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605360,221,222 - 60,352,620 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clmn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247347,716,030 - 7,797,796 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247347,716,202 - 7,797,790 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CLMN
6228 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 1 1
Low 10 2 3 5 1 20 1 1 1
Below cutoff 2 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000002772   ⟹   ENSSSCP00000002701
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl7116,476,791 - 116,590,265 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000076828   ⟹   ENSSSCP00000064347
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl7116,477,018 - 116,590,235 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000096092   ⟹   ENSSSCP00000078190
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl7116,476,940 - 116,489,816 (-)Ensembl
RefSeq Acc Id: NM_001243882   ⟹   NP_001230811
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.17116,476,789 - 116,590,181 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001230811   ⟸   NM_001243882
- UniProtKB: A0A4X1SE06 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000002701   ⟸   ENSSSCT00000002772
RefSeq Acc Id: ENSSSCP00000064347   ⟸   ENSSSCT00000076828
RefSeq Acc Id: ENSSSCP00000078190   ⟸   ENSSSCT00000096092
Protein Domains
Calponin-homology (CH)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000002494 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005042951 UniProtKB/TrEMBL
  ENSSSCG00015034574 UniProtKB/TrEMBL
  ENSSSCG00025074414 UniProtKB/TrEMBL
  ENSSSCG00030009241 UniProtKB/TrEMBL
  ENSSSCG00035024970 UniProtKB/TrEMBL
  ENSSSCG00040065523 UniProtKB/TrEMBL
  ENSSSCG00045008878 UniProtKB/TrEMBL
  ENSSSCG00050023394 UniProtKB/TrEMBL
  ENSSSCG00055030073 UniProtKB/TrEMBL
  ENSSSCG00060034607 UniProtKB/TrEMBL
  ENSSSCG00065063395 UniProtKB/TrEMBL
  ENSSSCG00070000219 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000002772 ENTREZGENE
  ENSSSCT00000002772.4 UniProtKB/TrEMBL
  ENSSSCT00000076828.2 UniProtKB/TrEMBL
  ENSSSCT00000096092.1 UniProtKB/TrEMBL
  ENSSSCT00005069050.1 UniProtKB/TrEMBL
  ENSSSCT00005069076.1 UniProtKB/TrEMBL
  ENSSSCT00005069105.1 UniProtKB/TrEMBL
  ENSSSCT00015045904.1 UniProtKB/TrEMBL
  ENSSSCT00015046010.1 UniProtKB/TrEMBL
  ENSSSCT00025102506.1 UniProtKB/TrEMBL
  ENSSSCT00025102620.1 UniProtKB/TrEMBL
  ENSSSCT00025102742.1 UniProtKB/TrEMBL
  ENSSSCT00030012626.1 UniProtKB/TrEMBL
  ENSSSCT00030012650.1 UniProtKB/TrEMBL
  ENSSSCT00030012670.1 UniProtKB/TrEMBL
  ENSSSCT00030012680.1 UniProtKB/TrEMBL
  ENSSSCT00030012700.1 UniProtKB/TrEMBL
  ENSSSCT00035032854.1 UniProtKB/TrEMBL
  ENSSSCT00035032865.1 UniProtKB/TrEMBL
  ENSSSCT00035032867.1 UniProtKB/TrEMBL
  ENSSSCT00035032879.1 UniProtKB/TrEMBL
  ENSSSCT00040089530.1 UniProtKB/TrEMBL
  ENSSSCT00040089734.1 UniProtKB/TrEMBL
  ENSSSCT00040089918.1 UniProtKB/TrEMBL
  ENSSSCT00040090230.1 UniProtKB/TrEMBL
  ENSSSCT00040090446.1 UniProtKB/TrEMBL
  ENSSSCT00045015012.1 UniProtKB/TrEMBL
  ENSSSCT00045015087.1 UniProtKB/TrEMBL
  ENSSSCT00045015166.1 UniProtKB/TrEMBL
  ENSSSCT00050031570.1 UniProtKB/TrEMBL
  ENSSSCT00050031592.1 UniProtKB/TrEMBL
  ENSSSCT00050031598.1 UniProtKB/TrEMBL
  ENSSSCT00050031609.1 UniProtKB/TrEMBL
  ENSSSCT00050031625.1 UniProtKB/TrEMBL
  ENSSSCT00050031653.1 UniProtKB/TrEMBL
  ENSSSCT00055059794.1 UniProtKB/TrEMBL
  ENSSSCT00055059804.1 UniProtKB/TrEMBL
  ENSSSCT00055059813.1 UniProtKB/TrEMBL
  ENSSSCT00060046899.1 UniProtKB/TrEMBL
  ENSSSCT00060046907.1 UniProtKB/TrEMBL
  ENSSSCT00060046912.1 UniProtKB/TrEMBL
  ENSSSCT00060046936.1 UniProtKB/TrEMBL
  ENSSSCT00065086994.1 UniProtKB/TrEMBL
  ENSSSCT00065087004.1 UniProtKB/TrEMBL
  ENSSSCT00065087011.1 UniProtKB/TrEMBL
  ENSSSCT00070000398.1 UniProtKB/TrEMBL
  ENSSSCT00070000402.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
InterPro Actinin_actin-bd_CS UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/TrEMBL
  CLMN_CH_first UniProtKB/TrEMBL
  CLMN_CH_second UniProtKB/TrEMBL
NCBI Gene CLMN ENTREZGENE
PANTHER CALMIN UniProtKB/TrEMBL
  MUSCLE-SPECIFIC PROTEIN 300 KDA, ISOFORM G UniProtKB/TrEMBL
Pfam PF00307 UniProtKB/TrEMBL
PROSITE ACTININ_1 UniProtKB/TrEMBL
  ACTININ_2 UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
SMART SM00033 UniProtKB/TrEMBL
Superfamily-SCOP SSF47576 UniProtKB/TrEMBL
UniProt A0A4X1SE06 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SEV3_PIG UniProtKB/TrEMBL
  A0A5G2R1F0_PIG UniProtKB/TrEMBL
  A0A8D0M066_PIG UniProtKB/TrEMBL
  A0A8D0M083_PIG UniProtKB/TrEMBL
  A0A8D0TK94_PIG UniProtKB/TrEMBL
  A0A8D0TP59_PIG UniProtKB/TrEMBL
  A0A8D0TQL0_PIG UniProtKB/TrEMBL
  A0A8D0U1F1_PIG UniProtKB/TrEMBL
  A0A8D0U1S2_PIG UniProtKB/TrEMBL
  A0A8D0V1M2_PIG UniProtKB/TrEMBL
  A0A8D0VG24_PIG UniProtKB/TrEMBL
  A0A8D0VG63_PIG UniProtKB/TrEMBL
  A0A8D0VGX6_PIG UniProtKB/TrEMBL
  A0A8D0VHA3_PIG UniProtKB/TrEMBL
  A0A8D0Z860_PIG UniProtKB/TrEMBL
  A0A8D0Z8J8_PIG UniProtKB/TrEMBL
  A0A8D0ZAP8_PIG UniProtKB/TrEMBL
  A0A8D0ZBN6_PIG UniProtKB/TrEMBL
  A0A8D1BYU4_PIG UniProtKB/TrEMBL
  A0A8D1FKV9_PIG UniProtKB/TrEMBL
  A0A8D1FL68_PIG UniProtKB/TrEMBL
  A0A8D1FT17_PIG UniProtKB/TrEMBL
  A0A8D1GXR7_PIG UniProtKB/TrEMBL
  A0A8D1GYX3_PIG UniProtKB/TrEMBL
  A0A8D1H1B8_PIG UniProtKB/TrEMBL
  A0A8D1KIK9_PIG UniProtKB/TrEMBL
  A0A8D1KJA3_PIG UniProtKB/TrEMBL
  A0A8D1LSR8_PIG UniProtKB/TrEMBL
  A0A8D1LT29_PIG UniProtKB/TrEMBL
  A0A8D1LU34_PIG UniProtKB/TrEMBL
  A0A8D1LUE7_PIG UniProtKB/TrEMBL
  A0A8D1LUG0_PIG UniProtKB/TrEMBL
  A0A8D1SBC1_PIG UniProtKB/TrEMBL
  A0A8D1SGE3_PIG UniProtKB/TrEMBL
  A0A8D1SIL1_PIG UniProtKB/TrEMBL
  A0A8D1TAI9_PIG UniProtKB/TrEMBL
  A0A8D1V6N7_PIG UniProtKB/TrEMBL
  A0A8D1V7J1_PIG UniProtKB/TrEMBL
  A0A8D1V7X1_PIG UniProtKB/TrEMBL
  A0A8D2BI10_PIG UniProtKB/TrEMBL
  A0A8D2CDU9_PIG UniProtKB/TrEMBL
  A0A8W4FG20_PIG UniProtKB/TrEMBL
  F1SAR7_PIG UniProtKB/TrEMBL
VGNC ID VGNC:86769 ENTREZGENE