LRRC74B (leucine rich repeat containing 74B) - Rat Genome Database

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Gene: LRRC74B (leucine rich repeat containing 74B) Sus scrofa
Analyze
Symbol: LRRC74B
Name: leucine rich repeat containing 74B
RGD ID: 13885520
Description: ASSOCIATED WITH autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); chromosome 22q11.2 microduplication syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leucine-rich repeat-containing protein 74B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1450,602,701 - 50,623,116 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11450,602,524 - 50,623,367 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21454,051,037 - 54,071,849 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LRRC74B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1450,602,701 - 50,623,116 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11450,602,524 - 50,623,367 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21454,051,037 - 54,071,849 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRRC74B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382221,045,946 - 21,064,168 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2221,045,946 - 21,064,168 (+)EnsemblGRCh38hg38GRCh38
GRCh372221,400,235 - 21,418,457 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,730,249 - 19,748,457 (+)NCBINCBI36Build 36hg18NCBI36
Celera224,891,551 - 4,909,746 (+)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef224,668,533 - 4,686,730 (+)NCBIHuRef
CHM1_12221,400,451 - 21,418,648 (+)NCBICHM1_1
T2T-CHM13v2.02221,454,733 - 21,472,942 (+)NCBIT2T-CHM13v2.0
Lrrc74b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391617,362,329 - 17,379,159 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1617,362,329 - 17,379,111 (-)EnsemblGRCm39 Ensembl
GRCm381617,544,465 - 17,561,328 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1617,544,465 - 17,561,247 (-)EnsemblGRCm38mm10GRCm38
MGSCv371617,544,558 - 17,561,340 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361617,458,027 - 17,474,810 (-)NCBIMGSCv36mm8
Celera1618,117,575 - 18,134,567 (-)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1610.87NCBI
Lrrc74b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81196,954,648 - 96,974,290 (+)NCBIGRCr8
mRatBN7.21183,450,588 - 83,468,906 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1183,450,624 - 83,468,922 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01187,417,604 - 87,434,745 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1187,418,205 - 87,434,482 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01190,468,905 - 90,485,820 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,441,996 - 85,458,851 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1182,218,955 - 82,236,559 (+)NCBICelera
Cytogenetic Map11q23NCBI
Lrrc74b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544219,272,433 - 19,287,527 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544219,272,350 - 19,296,090 (+)NCBIChiLan1.0ChiLan1.0
LRRC74B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22330,753,817 - 30,776,849 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12233,302,742 - 33,325,166 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0223,271,045 - 3,293,410 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12219,760,186 - 19,774,303 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2219,760,186 - 19,774,303 (+)Ensemblpanpan1.1panPan2
LRRC74B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12630,440,821 - 30,456,219 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2630,441,439 - 30,456,178 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2630,428,740 - 30,446,949 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02631,879,176 - 31,897,532 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12629,925,002 - 29,943,200 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02629,549,187 - 29,567,400 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02630,638,170 - 30,656,340 (+)NCBIUU_Cfam_GSD_1.0
Lrrc74b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118140,194,844 - 140,210,516 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366192,544,463 - 2,559,122 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366192,544,492 - 2,559,122 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRC74B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1194,988,262 - 5,005,253 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl194,988,805 - 5,004,819 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023670274537 - 3,191 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrrc74b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624945656,983 - 670,865 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624945656,956 - 685,824 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LRRC74B
272 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 3 3 5 2 22 2 3 1
Below cutoff 1 1 2

Sequence


RefSeq Acc Id: ENSSSCT00000011061   ⟹   ENSSSCP00000010773
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1450,602,701 - 50,623,116 (-)Ensembl
RefSeq Acc Id: XM_013983197   ⟹   XP_013838651
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11450,602,524 - 50,623,367 (-)NCBI
Sequence:
RefSeq Acc Id: XR_307529
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11450,602,524 - 50,623,114 (-)NCBI
Sequence:
RefSeq Acc Id: XP_013838651   ⟸   XM_013983197
- UniProtKB: A0A4X1UWY4 (UniProtKB/TrEMBL),   F1RKA1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000010773   ⟸   ENSSSCT00000011061


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010100 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015012545 UniProtKB/TrEMBL
  ENSSSCG00025071071 UniProtKB/TrEMBL
  ENSSSCG00030073480 UniProtKB/TrEMBL
  ENSSSCG00035004698 UniProtKB/TrEMBL
  ENSSSCG00040056150 UniProtKB/TrEMBL
  ENSSSCG00050045928 UniProtKB/TrEMBL
  ENSSSCG00060020671 UniProtKB/TrEMBL
  ENSSSCG00065049653 UniProtKB/TrEMBL
  ENSSSCG00070020051 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011061 ENTREZGENE
  ENSSSCT00000011061.5 UniProtKB/TrEMBL
  ENSSSCT00015016536.1 UniProtKB/TrEMBL
  ENSSSCT00025097571.1 UniProtKB/TrEMBL
  ENSSSCT00030102882.1 UniProtKB/TrEMBL
  ENSSSCT00035005922.1 UniProtKB/TrEMBL
  ENSSSCT00040076079.1 UniProtKB/TrEMBL
  ENSSSCT00050062489.1 UniProtKB/TrEMBL
  ENSSSCT00060028007.1 UniProtKB/TrEMBL
  ENSSSCT00065067999.1 UniProtKB/TrEMBL
  ENSSSCT00070039747.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
NCBI Gene LRRC74B ENTREZGENE
PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN UniProtKB/TrEMBL
  LEUCINE-RICH REPEAT-CONTAINING PROTEIN 74B UniProtKB/TrEMBL
Pfam LRR_6 UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_RI UniProtKB/TrEMBL
Superfamily-SCOP RNI-like UniProtKB/TrEMBL
UniProt A0A4X1UWY4 ENTREZGENE, UniProtKB/TrEMBL
  F1RKA1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:89856 ENTREZGENE