Gene: LRRC74B (leucine rich repeat containing 74B) Sus scrofa |
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Analyze |
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Symbol: |
LRRC74B |
Name: |
leucine rich repeat containing 74B |
RGD ID: |
13885520 |
Description: |
ASSOCIATED WITH autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); chromosome 22q11.2 microduplication syndrome (ortholog) |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
Previously known as: |
leucine-rich repeat-containing protein 74B |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
Sscrofa11.1 - Pig Sscrofa11.1 Assembly |
Position: |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 14 | 50,602,701 - 50,623,116 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 14 | 50,602,524 - 50,623,367 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 14 | 54,051,037 - 54,071,849 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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Imported Disease Annotations - ClinVar
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References
Additional References at PubMed
Genomics
Comparative Map Data
LRRC74B (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 14 | 50,602,701 - 50,623,116 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 14 | 50,602,524 - 50,623,367 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 14 | 54,051,037 - 54,071,849 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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LRRC74B (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 22 | 21,045,946 - 21,064,168 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 22 | 21,045,946 - 21,064,168 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 22 | 21,400,235 - 21,418,457 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 22 | 19,730,249 - 19,748,457 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 22 | 4,891,551 - 4,909,746 (+) | NCBI | | Celera | | | Cytogenetic Map | 22 | q11.21 | NCBI | | | | | HuRef | 22 | 4,668,533 - 4,686,730 (+) | NCBI | | HuRef | | | CHM1_1 | 22 | 21,400,451 - 21,418,648 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 22 | 21,454,733 - 21,472,942 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Lrrc74b (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 16 | 17,362,329 - 17,379,159 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 16 | 17,362,329 - 17,379,111 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 16 | 17,544,465 - 17,561,328 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 16 | 17,544,465 - 17,561,247 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 16 | 17,544,558 - 17,561,340 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 16 | 17,458,027 - 17,474,810 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 16 | 18,117,575 - 18,134,567 (-) | NCBI | | Celera | | | Cytogenetic Map | 16 | A3 | NCBI | | | | | cM Map | 16 | 10.87 | NCBI | | | | |
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Lrrc74b (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 11 | 96,954,648 - 96,974,290 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 11 | 83,450,588 - 83,468,906 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 11 | 83,450,624 - 83,468,922 (+) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 | 11 | 87,417,604 - 87,434,745 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 11 | 87,418,205 - 87,434,482 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 11 | 90,468,905 - 90,485,820 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 11 | 85,441,996 - 85,458,851 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 11 | 82,218,955 - 82,236,559 (+) | NCBI | | Celera | | | Cytogenetic Map | 11 | q23 | NCBI | | | | |
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Lrrc74b (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955442 | 19,272,433 - 19,287,527 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955442 | 19,272,350 - 19,296,090 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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LRRC74B (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 23 | 30,753,817 - 30,776,849 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 22 | 33,302,742 - 33,325,166 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 22 | 3,271,045 - 3,293,410 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 22 | 19,760,186 - 19,774,303 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 22 | 19,760,186 - 19,774,303 (+) | Ensembl | panpan1.1 | | panPan2 | |
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LRRC74B (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 26 | 30,440,821 - 30,456,219 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 26 | 30,441,439 - 30,456,178 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 26 | 30,428,740 - 30,446,949 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 26 | 31,879,176 - 31,897,532 (+) | NCBI | | ROS_Cfam_1.0 | | | UMICH_Zoey_3.1 | 26 | 29,925,002 - 29,943,200 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 26 | 29,549,187 - 29,567,400 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 26 | 30,638,170 - 30,656,340 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Lrrc74b (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024405118 | 140,194,844 - 140,210,516 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936619 | 2,544,463 - 2,559,122 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936619 | 2,544,492 - 2,559,122 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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LRRC74B (Chlorocebus sabaeus - green monkey) |
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Lrrc74b (Heterocephalus glaber - naked mole-rat) |
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Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
hemolymphoid system |
musculoskeletal system |
nervous system |
renal system |
reproductive system |
respiratory system |
High |
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Medium |
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Low |
9
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3
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3
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5
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2
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22
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2
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3
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1
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Below cutoff |
1
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1
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2
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Sequence
RefSeq Acc Id: |
ENSSSCT00000011061 ⟹ ENSSSCP00000010773 |
Type: |
CODING |
Position: |
Pig Assembly | Chr | Position (strand) | Source |
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Sscrofa11.1 Ensembl | 14 | 50,602,701 - 50,623,116 (-) | Ensembl |
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RefSeq Acc Id: |
XM_013983197 ⟹ XP_013838651 |
Type: |
CODING |
Position: |
Pig Assembly | Chr | Position (strand) | Source |
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Sscrofa11.1 | 14 | 50,602,524 - 50,623,367 (-) | NCBI |
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Sequence: |
GAGTGGGAAAAGGGCGATGCTGGAGCCGCCTGGAGTGGCGGGGAGAAAAGCCCGTGGCGCGCGT GCGCCAATCGGTCCTGCCTGCGAGTGGGTCAAGGTCAACGCAACCAACAACTCAGGGTTGCCCG GGCGACTGCCGCCGGGGAGGCGTTTCCATTGGCTGCCATGGTGCCTGTTCGCCACGCGCCGCAT TGATTGGTCAGTGCGCGGAGGGTCAGCGACATTTATAAGCCGCGCCCGGGCGGCAGTGCGGCAC ACTCCTGCTCTCAGCGGCTGCCGCTGCAGAGTGGGTGTAACCATGAGGGATCCCTGCGAGGGTC CTGGGGAGAAGGAAGAGCTGGAGGAAGGGGCGGCGGCCACTGGGCATCCTGCAGAAGTCCTGGA GGCCAAGTGTTCAGACGTGGATTCGGACTCTGACCTGGAGACAGAAGGCACCCATAAGCTTGGA GAACTGGTTAAGGATACCCTCTACCTGAGGTCTTGCCAGGCCCACAATGTCGTGCCTGCCTCCT GCTTCCTGCGCCAAGGGAGCGCCCCAGAGCTCAACCTGCGGCACCGTGGTCTGGGTCCCCAGGG GGCCCGGGCTCTGGCTTCCTCACTGATGTCCAATCCCTACATCAAGCGGCTGGACCTTCGGGAC AATGGACTCTGTGGGGCTGGCGCGGAGGCCCTGGCAGATGCTCTGAGCAAAAACAGCAGCATCA GTGATGTGGACCTGTCGGAGAACCAGCTGGGAGCAGTGGGAGCCCAGGCTGTCTGTGCCGCCCT GGTTATGAACCCAGCCATTCAGCGGGTTCAGCTGGCAGGGAATGGTCTGGAGGAACAAGCGGCC CAGTACCTGGCTGAACTCCTACTGGCCAACACAGGCCTGAAATCCCTGGACCTGAGCTATAACC AGCTGAATGACCAAGCAGGGGAAACACTTGGACCAGCCCTGGCAGAAAATGCAGGACTCACGGA GCTTAACATGAGCTGGAATCACCTGCGAGGCTCAGGAGCCGTGGCCTTTGCCAGGGGACTGGAG GCCAGCATCTTCTTGAGGGTCCTGGACATCTCATACAATGGCTGTGGAGATCCTGGAGCCTCTG CAGTGGGGGAGGCTCTCAAGACCAATAACGTGTTGGAGGAGCTCAATCTTAGCAACAACCGCAT TTCTGCATTGGGAGCTCTGAGCCTGGGCCAGGGTCTGCAGGTCAACCGGACACTGAGGATTCTT GTTGTATCCAGGAATCCCATGCGAAGTGAGGGCTGCTCTGCTCTTCTGAAGTCTGTCCGGGCCA ACCCATTGTCTGCCGCAGAACTGCTGGATTTCTCTGATATCCAGGTGAACAGAGAGTTTGATGA CCTTGCCGGTTCACTGAAGCTGATTCTTCCAAGGCTTTGCATAAAGACGGCTGCCCACAGAGTG GAGTACAGAAGAGAACTGCTGCCCATCTTCAGACCATCTAAATGATTGTGGAGTGTGGTTTCCT CACCTCTCCCATCAGCCACATCAACTTCCTGATGCTTTTTAACACTTGAGTCTGCATGGAGTCC CCATGGCAACCAGGTGGTAAGTCCCACAGAGGCGGCCTTCATGGTGACTCAAACATTTGTACTA CTCAGGACCTTCCTTTGCTCTCACTCATTCATGTAAGAGAAACTTGTACTATAGACTACACAAT GAGCTGGGCATTGGGCCAAGATGCCCAAGATCTGGCACATGATTAAAATATCAGGTGATGTGCA ACCGGCATTCCCAAACACCACTATGAATAATGCAAACTGACACAGCCTTTTCAGAAGGCAATTT ATTATCAAGCACTGAGAACTTAAAACTGCCTGCCTAGGAGTTCCCGTCGTGGCTCAGTGATTAA TGAATCCGACTAGGAACCATGAAGTCACGGGTACGATCCCTGGCCTTGCTCAGTGGGTTAAGGA TCTGGCGTTGCCGTGAGTTGTGGTGTAGGTTGCAGATGCGGCTCAGATCCCGAGTTGCTGTGGC TGTGGTGTAGGCCGGCATCTACAGCTCTGATTGGACCCCTAGCCTGGGAACCACCATATGCCGC GGGAGCGGCCCTAGAAAAGGCAAAAAGACCAAAAAAAAAAAAAAATCACATCGTTTGTCTGGCA GTTCCGCAAAAAGTTAAACCATATGGAGCTGACCATATGACCCAGAAATTCCACTTCTAGAGAA ATGAAAACATGTCCACTCCAAAAACTTGAACACAGATGTTCATAATGGCATTAGTCATAATATC CATAAAACGTAA
hide sequence
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RefSeq Acc Id: |
XR_307529 |
Type: |
NON-CODING |
Position: |
Pig Assembly | Chr | Position (strand) | Source |
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Sscrofa11.1 | 14 | 50,602,524 - 50,623,114 (-) | NCBI |
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Sequence: |
CACACTCCTGCTCTCAGCGGCTGCCGCTGCAGAGTGGGTGTAACCATGAGGGATCCCTGCGAGG GTCCTGGGGAGAAGGAAGAGCTGGAGGAAGGGGCGGCGGCCACTGGGCATCCTGCAGAAGTCCT GGAGGCCAAGTGTTCAGACGTGGATTCGGACTCTGACCTGGAGACAGAAGCAACAACCGCATTT CTGCATTGGGAGCTCTGAGCCTGGGCCAGGGTCTGCAGGTCAACCGGACACTGAGGATTCTTGT TGTATCCAGGAATCCCATGCGAAGTGAGGGCTGCTCTGCTCTTCTGAAGTCTGTCCGGGCCAAC CCATTGTCTGCCGCAGAACTGCTGGATTTCTCTGATATCCAGGTGAACAGAGAGTTTGATGACC TTGCCGGTTCACTGAAGCTGATTCTTCCAAGGCTTTGCATAAAGACGGCTGCCCACAGAGTGGA GTACAGAAGAGAACTGCTGCCCATCTTCAGACCATCTAAATGATTGTGGAGTGTGGTTTCCTCA CCTCTCCCATCAGCCACATCAACTTCCTGATGCTTTTTAACACTTGAGTCTGCATGGAGTCCCC ATGGCAACCAGGTGGTAAGTCCCACAGAGGCGGCCTTCATGGTGACTCAAACATTTGTACTACT CAGGACCTTCCTTTGCTCTCACTCATTCATGTAAGAGAAACTTGTACTATAGACTACACAATGA GCTGGGCATTGGGCCAAGATGCCCAAGATCTGGCACATGATTAAAATATCAGGTGATGTGCAAC CGGCATTCCCAAACACCACTATGAATAATGCAAACTGACACAGCCTTTTCAGAAGGCAATTTAT TATCAAGCACTGAGAACTTAAAACTGCCTGCCTAGGAGTTCCCGTCGTGGCTCAGTGATTAATG AATCCGACTAGGAACCATGAAGTCACGGGTACGATCCCTGGCCTTGCTCAGTGGGTTAAGGATC TGGCGTTGCCGTGAGTTGTGGTGTAGGTTGCAGATGCGGCTCAGATCCCGAGTTGCTGTGGCTG TGGTGTAGGCCGGCATCTACAGCTCTGATTGGACCCCTAGCCTGGGAACCACCATATGCCGCGG GAGCGGCCCTAGAAAAGGCAAAAAGACCAAAAAAAAAAAAAAATCACATCGTTTGTCTGGCAGT TCCGCAAAAAGTTAAACCATATGGAGCTGACCATATGACCCAGAAATTCCACTTCTAGAGAAAT GAAAACATGTCCACTCCAAAAACTTGAACACAGATGTTCATAATGGCATTAGTCATAATATCCA TAAAACGTAA
hide sequence
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RefSeq Acc Id: |
XP_013838651 ⟸ XM_013983197 |
- UniProtKB: |
A0A4X1UWY4 (UniProtKB/TrEMBL), F1RKA1 (UniProtKB/TrEMBL) |
- Sequence: |
MLEPPGVAGRKARGARAPIGPACEWVKVNATNNSGLPGRLPPGRRFHWLPWCLFATRRIDWSVR GGSATFISRARAAVRHTPALSGCRCRVGVTMRDPCEGPGEKEELEEGAAATGHPAEVLEAKCSD VDSDSDLETEGTHKLGELVKDTLYLRSCQAHNVVPASCFLRQGSAPELNLRHRGLGPQGARALA SSLMSNPYIKRLDLRDNGLCGAGAEALADALSKNSSISDVDLSENQLGAVGAQAVCAALVMNPA IQRVQLAGNGLEEQAAQYLAELLLANTGLKSLDLSYNQLNDQAGETLGPALAENAGLTELNMSW NHLRGSGAVAFARGLEASIFLRVLDISYNGCGDPGASAVGEALKTNNVLEELNLSNNRISALGA LSLGQGLQVNRTLRILVVSRNPMRSEGCSALLKSVRANPLSAAELLDFSDIQVNREFDDLAGSL KLILPRLCIKTAAHRVEYRRELLPIFRPSK
hide sequence
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RefSeq Acc Id: |
ENSSSCP00000010773 ⟸ ENSSSCT00000011061 |
Additional Information
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