UBIAD1 (UbiA prenyltransferase domain containing 1) - Rat Genome Database

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Gene: UBIAD1 (UbiA prenyltransferase domain containing 1) Sus scrofa
Analyze
Symbol: UBIAD1
Name: UbiA prenyltransferase domain containing 1
RGD ID: 13884751
Description: ENCODES a protein that exhibits antioxidant activity (inferred); prenyltransferase activity (inferred); INVOLVED IN cellular oxidant detoxification (inferred); menaquinone biosynthetic process (inferred); phylloquinone biosynthetic process (inferred); ASSOCIATED WITH Cardiac Edema (ortholog); Charcot-Marie-Tooth disease type 2 (ortholog); chromosome 1p36 deletion syndrome (ortholog); FOUND IN cytoplasm (inferred); endoplasmic reticulum (inferred); Golgi membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiA prenyltransferase domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl671,419,602 - 71,433,210 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1671,419,559 - 71,431,275 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2665,324,184 - 65,335,891 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
UBIAD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl671,419,602 - 71,433,210 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1671,419,559 - 71,431,275 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2665,324,184 - 65,335,891 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBIAD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38111,273,198 - 11,299,574 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl111,273,198 - 11,296,049 (+)EnsemblGRCh38hg38GRCh38
GRCh37111,333,255 - 11,359,631 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36111,255,866 - 11,268,929 (+)NCBINCBI36Build 36hg18NCBI36
Celera110,445,515 - 10,460,752 (+)NCBICelera
Cytogenetic Map1p36.22NCBI
HuRef110,484,571 - 10,499,808 (+)NCBIHuRef
CHM1_1111,321,582 - 11,336,819 (+)NCBICHM1_1
T2T-CHM13v2.0110,814,791 - 10,841,185 (+)NCBIT2T-CHM13v2.0
Ubiad1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394148,518,952 - 148,529,217 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4148,518,952 - 148,529,228 (-)EnsemblGRCm39 Ensembl
GRCm384148,434,495 - 148,444,760 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4148,434,495 - 148,444,771 (-)EnsemblGRCm38mm10GRCm38
MGSCv374147,808,606 - 147,818,860 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364147,278,297 - 147,288,551 (-)NCBIMGSCv36mm8
Celera4150,694,934 - 150,705,296 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map478.76NCBI
Ubiad1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85164,139,714 - 164,167,777 (-)NCBIGRCr8
mRatBN7.25158,856,582 - 158,880,490 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5158,868,672 - 158,880,271 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5161,585,431 - 161,597,024 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05163,407,568 - 163,419,147 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05163,363,915 - 163,375,494 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05165,247,630 - 165,259,228 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5165,247,133 - 165,259,224 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05168,904,231 - 168,915,829 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45165,515,219 - 165,526,817 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15165,527,047 - 165,536,759 (-)NCBI
Celera5157,145,271 - 157,156,869 (-)NCBICelera
Cytogenetic Map5q36NCBI
Ubiad1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554862,472,035 - 2,481,975 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554862,472,035 - 2,481,975 (-)NCBIChiLan1.0ChiLan1.0
UBIAD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21216,825,270 - 216,947,504 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11215,471,658 - 215,593,828 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0110,039,415 - 10,161,005 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1111,260,412 - 11,283,070 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl111,260,412 - 11,281,381 (+)Ensemblpanpan1.1panPan2
UBIAD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1284,803,338 - 84,813,030 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl284,804,935 - 84,813,344 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha281,333,812 - 81,343,426 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0285,465,002 - 85,474,235 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl285,465,558 - 85,474,643 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1282,213,915 - 82,223,567 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0283,215,697 - 83,225,323 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0284,278,162 - 84,287,802 (-)NCBIUU_Cfam_GSD_1.0
Ubiad1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505834,459,827 - 34,468,386 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936474284,569 - 295,572 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936474284,630 - 293,090 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBIAD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120120,499,210 - 120,512,759 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20120,496,075 - 120,512,748 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605424,407,273 - 24,421,040 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubiad1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248181,554,084 - 1,565,383 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248181,555,751 - 1,565,281 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in UBIAD1
381 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 4 3 5 2 23 2 3 3
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000057161   ⟹   ENSSSCP00000052244
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl671,419,602 - 71,433,210 (+)Ensembl
RefSeq Acc Id: XM_003127564   ⟹   XP_003127612
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1671,419,559 - 71,431,275 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002344901
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1671,419,720 - 71,428,789 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003127612   ⟸   XM_003127564
- UniProtKB: A0A287B839 (UniProtKB/TrEMBL),   A0A8D1U5K4 (UniProtKB/TrEMBL),   A0A8D1WYG4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000052244   ⟸   ENSSSCT00000057161


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000037325 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005002531 UniProtKB/TrEMBL
  ENSSSCG00015004551 UniProtKB/TrEMBL
  ENSSSCG00025061054 UniProtKB/TrEMBL
  ENSSSCG00030034051 UniProtKB/TrEMBL
  ENSSSCG00035010982 UniProtKB/TrEMBL
  ENSSSCG00040050249 UniProtKB/TrEMBL
  ENSSSCG00045003355 UniProtKB/TrEMBL
  ENSSSCG00050015822 UniProtKB/TrEMBL
  ENSSSCG00055018432 UniProtKB/TrEMBL
  ENSSSCG00060076597 UniProtKB/TrEMBL
  ENSSSCG00065026079 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000057161 ENTREZGENE
  ENSSSCT00000057161.2 UniProtKB/TrEMBL
  ENSSSCT00005003845.1 UniProtKB/TrEMBL
  ENSSSCT00015006103.1 UniProtKB/TrEMBL
  ENSSSCT00025083595.1 UniProtKB/TrEMBL
  ENSSSCT00030047117.1 UniProtKB/TrEMBL
  ENSSSCT00035013764.1 UniProtKB/TrEMBL
  ENSSSCT00040067783.1 UniProtKB/TrEMBL
  ENSSSCT00045005468.1 UniProtKB/TrEMBL
  ENSSSCT00050021465.1 UniProtKB/TrEMBL
  ENSSSCT00055036083.1 UniProtKB/TrEMBL
  ENSSSCT00060105106.1 UniProtKB/TrEMBL
  ENSSSCT00065035010.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.357.140 UniProtKB/TrEMBL
  UbiA prenyltransferase UniProtKB/TrEMBL
InterPro UbiA_prenyltransferase UniProtKB/TrEMBL
  UbiA_sf UniProtKB/TrEMBL
  UBIAD1 UniProtKB/TrEMBL
KEGG Report ssc:100523441 UniProtKB/TrEMBL
NCBI Gene UBIAD1 ENTREZGENE
PANTHER PTHR13929 UniProtKB/TrEMBL
  UBIA PRENYLTRANSFERASE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam UbiA UniProtKB/TrEMBL
PIRSF UBIAD1 UniProtKB/TrEMBL
UniProt A0A287B839 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1U5K4 ENTREZGENE
  A0A8D1WYG4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8D1U5K4 UniProtKB/TrEMBL
VGNC ID VGNC:94659 ENTREZGENE