KIF1C (kinesin family member 1C) - Rat Genome Database

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Gene: KIF1C (kinesin family member 1C) Sus scrofa
Analyze
Symbol: KIF1C
Name: kinesin family member 1C
RGD ID: 13880677
Description: ENCODES a protein that exhibits ATP binding (inferred); cytoskeletal motor activity (inferred); microtubule binding (inferred); INVOLVED IN anterograde neuronal dense core vesicle transport (ortholog); retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (ortholog); ASSOCIATED WITH cerebellar ataxia (ortholog); congenital myasthenic syndrome 4A (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kinesin-like protein KIF1C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,897,494 - 51,924,432 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11251,899,762 - 51,924,465 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21253,968,351 - 53,993,120 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
KIF1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,897,494 - 51,924,432 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11251,899,762 - 51,924,465 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21253,968,351 - 53,993,120 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KIF1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,997,950 - 5,028,401 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,997,950 - 5,028,401 (+)EnsemblGRCh38hg38GRCh38
GRCh37174,901,245 - 4,931,696 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,841,998 - 4,868,720 (+)NCBINCBI36Build 36hg18NCBI36
Build 34174,841,999 - 4,868,720NCBI
Celera174,916,054 - 4,946,508 (+)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef174,789,123 - 4,819,525 (+)NCBIHuRef
CHM1_1174,910,557 - 4,941,008 (+)NCBICHM1_1
T2T-CHM13v2.0174,888,274 - 4,918,727 (+)NCBIT2T-CHM13v2.0
Kif1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,591,170 - 70,622,796 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,591,374 - 70,622,790 (+)EnsemblGRCm39 Ensembl
GRCm381170,700,396 - 70,731,970 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,700,548 - 70,731,964 (+)EnsemblGRCm38mm10GRCm38
MGSCv371170,514,050 - 70,545,472 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,518,995 - 70,545,074 (+)NCBIMGSCv36mm8
Celera1178,251,472 - 78,282,892 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1143.21NCBI
Kif1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,913,010 - 55,942,220 (+)NCBIGRCr8
mRatBN7.21055,414,412 - 55,444,587 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,415,900 - 55,443,545 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1060,094,995 - 60,124,344 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,583,507 - 59,612,860 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01055,082,608 - 55,111,959 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01057,322,259 - 57,352,395 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,322,331 - 57,351,353 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01057,067,764 - 57,097,528 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,580,646 - 57,622,517 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11057,594,268 - 57,636,139 (+)NCBI
Celera1054,559,969 - 54,589,678 (+)NCBICelera
Cytogenetic Map10q24NCBI
Kif1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,399,768 - 10,422,712 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,399,768 - 10,423,249 (+)NCBIChiLan1.0ChiLan1.0
KIF1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,608,356 - 12,635,096 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,576,729 - 14,603,468 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0175,046,488 - 5,073,220 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1175,035,014 - 5,061,957 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl175,035,014 - 5,061,957 (+)Ensemblpanpan1.1panPan2
KIF1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,613,335 - 31,635,313 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,613,398 - 31,633,736 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,751,844 - 31,773,973 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0531,717,236 - 31,739,368 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl531,717,299 - 31,737,640 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1531,683,805 - 31,705,933 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,643,532 - 31,665,655 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0531,819,860 - 31,841,999 (-)NCBIUU_Cfam_GSD_1.0
Kif1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,180,016 - 53,204,590 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366772,696,209 - 2,720,959 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366772,696,385 - 2,720,959 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIF1C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,478,315 - 4,502,261 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605917,129,946 - 17,155,908 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kif1c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247868,845,033 - 8,869,577 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247868,845,352 - 8,868,681 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in KIF1C
758 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000019480   ⟹   ENSSSCP00000018962
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1251,897,494 - 51,924,432 (-)Ensembl
RefSeq Acc Id: XM_021067761   ⟹   XP_020923420
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11251,899,762 - 51,924,465 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020923420   ⟸   XM_021067761
- UniProtKB: A0A8D1QSI4 (UniProtKB/TrEMBL),   A0A8D0R9T2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000018962   ⟸   ENSSSCT00000019480
Protein Domains
Kinesin motor


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017900 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015071721 UniProtKB/TrEMBL
  ENSSSCG00025016717 UniProtKB/TrEMBL
  ENSSSCG00030073652 UniProtKB/TrEMBL
  ENSSSCG00035015075 UniProtKB/TrEMBL
  ENSSSCG00045017073 UniProtKB/TrEMBL
  ENSSSCG00050016591 UniProtKB/TrEMBL
  ENSSSCG00055015095 UniProtKB/TrEMBL
  ENSSSCG00060042343 UniProtKB/TrEMBL
  ENSSSCG00065050584 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000019480 ENTREZGENE
  ENSSSCT00000019480.5 UniProtKB/TrEMBL
  ENSSSCT00015096327.1 UniProtKB/TrEMBL
  ENSSSCT00025022545.1 UniProtKB/TrEMBL
  ENSSSCT00030103151.1 UniProtKB/TrEMBL
  ENSSSCT00035019164.1 UniProtKB/TrEMBL
  ENSSSCT00045029079.1 UniProtKB/TrEMBL
  ENSSSCT00050022653.1 UniProtKB/TrEMBL
  ENSSSCT00055030099.1 UniProtKB/TrEMBL
  ENSSSCT00055030215.1 UniProtKB/TrEMBL
  ENSSSCT00060057410.1 UniProtKB/TrEMBL
  ENSSSCT00065069303.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.200.20 UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/TrEMBL
  6.10.250.2520 UniProtKB/TrEMBL
InterPro FHA_dom UniProtKB/TrEMBL
  Kinesin_assoc UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/TrEMBL
NCBI Gene KIF1C ENTREZGENE
PANTHER KINESIN-LIKE PROTEIN KIF1C ISOFORM X1 UniProtKB/TrEMBL
  STAR-RELATED LIPID TRANSFER PROTEIN 9 UniProtKB/TrEMBL
Pfam FHA UniProtKB/TrEMBL
  Kinesin UniProtKB/TrEMBL
  Kinesin_assoc UniProtKB/TrEMBL
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE KINESIN_MOTOR_1 UniProtKB/TrEMBL
  KINESIN_MOTOR_2 UniProtKB/TrEMBL
SMART KISc UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8D0R9T2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1QSI4 ENTREZGENE
  F1RFY6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:89461 ENTREZGENE