ASL (argininosuccinate lyase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: ASL (argininosuccinate lyase) Sus scrofa
Analyze
Symbol: ASL
Name: argininosuccinate lyase
RGD ID: 13879911
Description: ENCODES a protein that exhibits argininosuccinate lyase activity (ortholog); INVOLVED IN amino acid metabolic process (ortholog); ammonia assimilation cycle (ortholog); argininosuccinate metabolic process (ortholog); PARTICIPATES IN AGAT deficiency pathway; arginine and proline metabolic pathway; argininosuccinic aciduria pathway; ASSOCIATED WITH amino acid metabolic disorder (ortholog); argininosuccinic aciduria (ortholog); congenital myasthenic syndrome 4C (ortholog); FOUND IN cell body fiber (ortholog); mitochondrial outer membrane (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl316,637,481 - 16,646,867 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1316,637,481 - 16,646,869 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2316,889,701 - 16,899,549 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ASL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl316,637,481 - 16,646,867 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1316,637,481 - 16,646,869 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2316,889,701 - 16,899,549 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ASL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38766,075,819 - 66,093,576 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl766,075,800 - 66,094,697 (+)EnsemblGRCh38hg38GRCh38
GRCh37765,540,806 - 65,558,563 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36765,178,211 - 65,195,765 (+)NCBINCBI36Build 36hg18NCBI36
Build 34764,984,963 - 65,002,090NCBI
Celera766,555,388 - 66,572,941 (-)NCBICelera
Cytogenetic Map7q11.21ENTREZGENE
HuRef761,727,625 - 61,745,174 (+)NCBIHuRef
CHM1_1765,636,440 - 65,653,994 (+)NCBICHM1_1
T2T-CHM13v2.0767,297,906 - 67,315,665 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2764,878,281 - 64,895,827 (+)NCBI
Asl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395130,040,099 - 130,053,222 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5130,040,099 - 130,058,088 (-)EnsemblGRCm39 Ensembl
GRCm385130,011,258 - 130,024,381 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5130,011,258 - 130,029,247 (-)EnsemblGRCm38mm10GRCm38
MGSCv375130,487,373 - 130,500,201 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365130,296,206 - 130,309,034 (-)NCBIMGSCv36mm8
Celera5127,015,654 - 127,028,488 (-)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map568.37NCBI
Asl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,295,779 - 32,313,257 (+)NCBIGRCr8
mRatBN7.21226,659,664 - 26,677,136 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,659,565 - 26,679,662 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1227,807,557 - 27,824,901 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,418,086 - 28,435,430 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01227,479,553 - 27,496,930 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01230,160,922 - 30,178,348 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1230,165,694 - 30,178,341 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01232,097,760 - 32,115,110 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,702,882 - 27,720,230 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11227,570,168 - 27,583,445 (+)NCBI
Celera1228,373,639 - 28,390,987 (+)NCBICelera
Cytogenetic Map12q12NCBI
Asl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554568,411,220 - 8,416,992 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554568,409,767 - 8,419,915 (-)NCBIChiLan1.0ChiLan1.0
ASL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.16768,522 - 779,144 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl6730,358 - 779,424 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha62,468,962 - 2,479,644 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.06573,409 - 584,014 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl6565,544 - 584,326 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.16517,146 - 527,808 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.06511,138 - 521,729 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.06682,422 - 693,029 (-)NCBIUU_Cfam_GSD_1.0
Asl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344126,336,725 - 126,347,816 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365437,688,741 - 7,699,851 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365437,688,788 - 7,699,842 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1281,782,434 - 1,800,581 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl281,782,553 - 1,802,517 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607014,846,508 - 14,865,029 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Asl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247408,414,733 - 8,423,777 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247408,414,664 - 8,423,797 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ASL
352 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2
Low 10 4 3 5 2 23 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000008483   ⟹   ENSSSCP00000008264
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl316,637,481 - 16,646,867 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000050939   ⟹   ENSSSCP00000043081
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl316,637,549 - 16,646,865 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000063455   ⟹   ENSSSCP00000042241
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl316,637,545 - 16,646,867 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000077309   ⟹   ENSSSCP00000065442
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl316,640,513 - 16,646,867 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000087710   ⟹   ENSSSCP00000060417
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl316,640,513 - 16,646,867 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000098266   ⟹   ENSSSCP00000080589
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl316,637,545 - 16,646,867 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000101811   ⟹   ENSSSCP00000079041
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl316,637,545 - 16,646,867 (+)Ensembl
RefSeq Acc Id: XM_021086360   ⟹   XP_020942019
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1316,637,481 - 16,646,869 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020942019 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000008264
  ENSSSCP00000008264.2
  ENSSSCP00000042241.3
  ENSSSCP00000043081.2
  ENSSSCP00000060417.2
  ENSSSCP00000065442.1
  ENSSSCP00000079041.1
  ENSSSCP00000080589.1
  ENSSSCP00005023540.1
  ENSSSCP00005023557.1
  ENSSSCP00005023587.1
  ENSSSCP00005023622.1
  ENSSSCP00005023637.1
  ENSSSCP00005023778.1
  ENSSSCP00015027971.1
  ENSSSCP00015028047.1
  ENSSSCP00015028078.1
  ENSSSCP00025038338.1
  ENSSSCP00025038453.1
  ENSSSCP00025038564.1
  ENSSSCP00025038682.1
  ENSSSCP00025038813.1
  ENSSSCP00025038853.1
  ENSSSCP00030040085.1
  ENSSSCP00030040091.1
  ENSSSCP00030040099.1
  ENSSSCP00030040112.1
  ENSSSCP00030040131.1
  ENSSSCP00030040140.1
  ENSSSCP00035030321.1
  ENSSSCP00035030335.1
  ENSSSCP00035030355.1
  ENSSSCP00035030361.1
  ENSSSCP00035030368.1
  ENSSSCP00035030379.1
  ENSSSCP00045041215.1
  ENSSSCP00045041345.1
  ENSSSCP00045041482.1
  ENSSSCP00045041704.1
  ENSSSCP00045041786.1
  ENSSSCP00045041887.1
  ENSSSCP00050038968.1
  ENSSSCP00055044411.1
  ENSSSCP00055044485.1
  ENSSSCP00055044660.1
  ENSSSCP00055044719.1
  ENSSSCP00055044774.1
  ENSSSCP00055044831.1
  ENSSSCP00060019167.1
  ENSSSCP00060019180.1
  ENSSSCP00060019183.1
  ENSSSCP00060019185.1
  ENSSSCP00060019188.1
  ENSSSCP00065046725.1
  ENSSSCP00065046735.1
  ENSSSCP00065046759.1
  ENSSSCP00065046764.1
  ENSSSCP00065046768.1
  ENSSSCP00065046776.1
  ENSSSCP00070007868.1
  ENSSSCP00070007893.1
  ENSSSCP00070007940.1
  ENSSSCP00070007960.1
  ENSSSCP00070007979.1
  ENSSSCP00070007990.1
RefSeq Acc Id: XP_020942019   ⟸   XM_021086360
- UniProtKB: A0A4X1SZQ3 (UniProtKB/TrEMBL),   F1RJH8 (UniProtKB/TrEMBL),   A0A5G2R4F4 (UniProtKB/TrEMBL),   A0A8D0J8Q2 (UniProtKB/TrEMBL),   A0A8D1A8I8 (UniProtKB/TrEMBL),   A0A8D1CF86 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000043081   ⟸   ENSSSCT00000050939
RefSeq Acc Id: ENSSSCP00000065442   ⟸   ENSSSCT00000077309
RefSeq Acc Id: ENSSSCP00000042241   ⟸   ENSSSCT00000063455
RefSeq Acc Id: ENSSSCP00000060417   ⟸   ENSSSCT00000087710
RefSeq Acc Id: ENSSSCP00000008264   ⟸   ENSSSCT00000008483
RefSeq Acc Id: ENSSSCP00000079041   ⟸   ENSSSCT00000101811
RefSeq Acc Id: ENSSSCP00000080589   ⟸   ENSSSCT00000098266

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007738 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005024138 UniProtKB/TrEMBL
  ENSSSCG00015052585 UniProtKB/TrEMBL
  ENSSSCG00025063734 UniProtKB/TrEMBL
  ENSSSCG00030062118 UniProtKB/TrEMBL
  ENSSSCG00035055828 UniProtKB/TrEMBL
  ENSSSCG00045032964 UniProtKB/TrEMBL
  ENSSSCG00050066539 UniProtKB/TrEMBL
  ENSSSCG00055027902 UniProtKB/TrEMBL
  ENSSSCG00060033063 UniProtKB/TrEMBL
  ENSSSCG00065076201 UniProtKB/TrEMBL
  ENSSSCG00070005015 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000008483 ENTREZGENE
  ENSSSCT00000008483.5 UniProtKB/TrEMBL
  ENSSSCT00000050939.3 UniProtKB/TrEMBL
  ENSSSCT00000063455.3 UniProtKB/TrEMBL
  ENSSSCT00000077309.2 UniProtKB/TrEMBL
  ENSSSCT00000087710.2 UniProtKB/TrEMBL
  ENSSSCT00000098266.1 UniProtKB/TrEMBL
  ENSSSCT00000101811.1 UniProtKB/TrEMBL
  ENSSSCT00005038366.1 UniProtKB/TrEMBL
  ENSSSCT00005038395.1 UniProtKB/TrEMBL
  ENSSSCT00005038441.1 UniProtKB/TrEMBL
  ENSSSCT00005038500.1 UniProtKB/TrEMBL
  ENSSSCT00005038521.1 UniProtKB/TrEMBL
  ENSSSCT00005038713.1 UniProtKB/TrEMBL
  ENSSSCT00015069981.1 UniProtKB/TrEMBL
  ENSSSCT00015070160.1 UniProtKB/TrEMBL
  ENSSSCT00015070225.1 UniProtKB/TrEMBL
  ENSSSCT00025087894.1 UniProtKB/TrEMBL
  ENSSSCT00025088118.1 UniProtKB/TrEMBL
  ENSSSCT00025088307.1 UniProtKB/TrEMBL
  ENSSSCT00025088532.1 UniProtKB/TrEMBL
  ENSSSCT00025088811.1 UniProtKB/TrEMBL
  ENSSSCT00025088886.1 UniProtKB/TrEMBL
  ENSSSCT00030086900.1 UniProtKB/TrEMBL
  ENSSSCT00030086912.1 UniProtKB/TrEMBL
  ENSSSCT00030086920.1 UniProtKB/TrEMBL
  ENSSSCT00030086940.1 UniProtKB/TrEMBL
  ENSSSCT00030086971.1 UniProtKB/TrEMBL
  ENSSSCT00030086984.1 UniProtKB/TrEMBL
  ENSSSCT00035074681.1 UniProtKB/TrEMBL
  ENSSSCT00035074710.1 UniProtKB/TrEMBL
  ENSSSCT00035074748.1 UniProtKB/TrEMBL
  ENSSSCT00035074758.1 UniProtKB/TrEMBL
  ENSSSCT00035074772.1 UniProtKB/TrEMBL
  ENSSSCT00035074799.1 UniProtKB/TrEMBL
  ENSSSCT00045058896.1 UniProtKB/TrEMBL
  ENSSSCT00045059045.1 UniProtKB/TrEMBL
  ENSSSCT00045059210.1 UniProtKB/TrEMBL
  ENSSSCT00045059483.1 UniProtKB/TrEMBL
  ENSSSCT00045059576.1 UniProtKB/TrEMBL
  ENSSSCT00045059707.1 UniProtKB/TrEMBL
  ENSSSCT00050090681.1 UniProtKB/TrEMBL
  ENSSSCT00055055646.1 UniProtKB/TrEMBL
  ENSSSCT00055055734.1 UniProtKB/TrEMBL
  ENSSSCT00055055933.1 UniProtKB/TrEMBL
  ENSSSCT00055055997.1 UniProtKB/TrEMBL
  ENSSSCT00055056061.1 UniProtKB/TrEMBL
  ENSSSCT00055056123.1 UniProtKB/TrEMBL
  ENSSSCT00060044856.1 UniProtKB/TrEMBL
  ENSSSCT00060044876.1 UniProtKB/TrEMBL
  ENSSSCT00060044879.1 UniProtKB/TrEMBL
  ENSSSCT00060044881.1 UniProtKB/TrEMBL
  ENSSSCT00060044886.1 UniProtKB/TrEMBL
  ENSSSCT00065105327.1 UniProtKB/TrEMBL
  ENSSSCT00065105345.1 UniProtKB/TrEMBL
  ENSSSCT00065105386.1 UniProtKB/TrEMBL
  ENSSSCT00065105393.1 UniProtKB/TrEMBL
  ENSSSCT00065105399.1 UniProtKB/TrEMBL
  ENSSSCT00065105408.1 UniProtKB/TrEMBL
  ENSSSCT00070009587.1 UniProtKB/TrEMBL
  ENSSSCT00070009615.1 UniProtKB/TrEMBL
  ENSSSCT00070009672.1 UniProtKB/TrEMBL
  ENSSSCT00070009695.1 UniProtKB/TrEMBL
  ENSSSCT00070009717.1 UniProtKB/TrEMBL
  ENSSSCT00070009728.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.275.10 UniProtKB/TrEMBL
  Fumarase/aspartase (C-terminal domain) UniProtKB/TrEMBL
  Fumarase/aspartase (Central domain) UniProtKB/TrEMBL
InterPro Arg_succ_lyase_C UniProtKB/TrEMBL
  Argininosuccinate_lyase UniProtKB/TrEMBL
  Fumarase/histidase_N UniProtKB/TrEMBL
  Fumarate_lyase_CS UniProtKB/TrEMBL
  Fumarate_lyase_fam UniProtKB/TrEMBL
  Fumarate_lyase_N UniProtKB/TrEMBL
  L-Aspartase-like UniProtKB/TrEMBL
NCBI Gene ASL ENTREZGENE
PANTHER ARGININOSUCCINATE LYASE UniProtKB/TrEMBL
  PTHR43814 UniProtKB/TrEMBL
Pfam ASL_C2 UniProtKB/TrEMBL
  Lyase_1 UniProtKB/TrEMBL
PRINTS ARGSUCLYASE UniProtKB/TrEMBL
  FUMRATELYASE UniProtKB/TrEMBL
PROSITE FUMARATE_LYASES UniProtKB/TrEMBL
Superfamily-SCOP SSF48557 UniProtKB/TrEMBL
UniProt A0A287AEG5_PIG UniProtKB/TrEMBL
  A0A287AGI1_PIG UniProtKB/TrEMBL
  A0A4X1SXM0_PIG UniProtKB/TrEMBL
  A0A4X1SZ94_PIG UniProtKB/TrEMBL
  A0A4X1SZH6_PIG UniProtKB/TrEMBL
  A0A4X1SZQ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T017_PIG UniProtKB/TrEMBL
  A0A5G2Q918_PIG UniProtKB/TrEMBL
  A0A5G2R4F4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0J8Q2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0J985_PIG UniProtKB/TrEMBL
  A0A8D0JAH2_PIG UniProtKB/TrEMBL
  A0A8D0JE14_PIG UniProtKB/TrEMBL
  A0A8D0JFP9_PIG UniProtKB/TrEMBL
  A0A8D0SXM0_PIG UniProtKB/TrEMBL
  A0A8D0XQQ8_PIG UniProtKB/TrEMBL
  A0A8D0XQZ2_PIG UniProtKB/TrEMBL
  A0A8D0XU85_PIG UniProtKB/TrEMBL
  A0A8D0XVU2_PIG UniProtKB/TrEMBL
  A0A8D0XVY7_PIG UniProtKB/TrEMBL
  A0A8D1A8I8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1AHH6_PIG UniProtKB/TrEMBL
  A0A8D1CF86 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1NH00_PIG UniProtKB/TrEMBL
  A0A8W4FJG4_PIG UniProtKB/TrEMBL
  A0A8W4FM70_PIG UniProtKB/TrEMBL
  F1RJH8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:100380 ENTREZGENE