SPMIP7 (sperm microtubule inner protein 7) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: SPMIP7 (sperm microtubule inner protein 7) Sus scrofa
Analyze
Symbol: SPMIP7
Name: sperm microtubule inner protein 7
RGD ID: 13879379
Description: INVOLVED IN spermatogenesis (inferred); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C9H7orf72; chromosome 9 C7orf72 homolog; SPATA48; spermatogenesis associated 48; uncharacterized protein C7orf72 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9136,188,608 - 136,235,985 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19136,189,235 - 136,224,000 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29149,715,727 - 149,763,088 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
spermatogenesis  (IBA,IEA)

References

Genomics

Comparative Map Data
SPMIP7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9136,188,608 - 136,235,985 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19136,189,235 - 136,224,000 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29149,715,727 - 149,763,088 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPMIP7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38750,095,883 - 50,159,256 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl750,095,883 - 50,159,256 (+)EnsemblGRCh38hg38GRCh38
GRCh37750,135,479 - 50,198,852 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36750,106,348 - 50,169,398 (+)NCBINCBI36Build 36hg18NCBI36
Celera750,229,773 - 50,293,484 (+)NCBICelera
Cytogenetic Map7p12.2NCBI
HuRef750,016,509 - 50,079,746 (+)NCBIHuRef
CHM1_1750,137,668 - 50,201,160 (+)NCBICHM1_1
T2T-CHM13v2.0750,257,048 - 50,320,459 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2750,172,871 - 50,236,064 (+)NCBI
Spmip7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391111,412,089 - 11,465,658 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1111,412,094 - 11,465,192 (+)EnsemblGRCm39 Ensembl
GRCm381111,463,744 - 11,515,192 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1111,462,094 - 11,515,192 (+)EnsemblGRCm38mm10GRCm38
MGSCv371111,389,269 - 11,415,193 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361111,389,269 - 11,415,193 (+)NCBIMGSCv36mm8
Celera1111,948,754 - 11,974,675 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map116.93NCBI
Spmip7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81490,244,087 - 90,299,294 (+)NCBIGRCr8
mRatBN7.21486,030,427 - 86,085,644 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1486,030,655 - 86,085,644 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1490,441,207 - 90,496,323 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01491,685,967 - 91,741,070 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01488,153,160 - 88,208,245 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01491,556,782 - 91,614,099 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1491,557,601 - 91,613,540 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01491,344,025 - 91,399,177 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41492,358,993 - 92,383,442 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11492,373,932 - 92,402,586 (+)NCBI
Celera1485,066,567 - 85,091,002 (+)NCBICelera
Cytogenetic Map14q21NCBI
Spmip7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554563,845,811 - 3,885,592 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554563,845,875 - 3,885,908 (-)NCBIChiLan1.0ChiLan1.0
SPMIP7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2654,974,211 - 55,040,496 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17103,298,934 - 103,365,219 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0750,738,047 - 50,802,041 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1750,984,468 - 51,046,970 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl750,984,231 - 51,047,029 (+)Ensemblpanpan1.1panPan2
SPMIP7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1181,591,336 - 1,652,140 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha181,453,660 - 1,517,130 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0181,519,619 - 1,583,103 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl181,520,878 - 1,580,617 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1181,494,091 - 1,557,561 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0181,491,000 - 1,554,464 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0181,627,204 - 1,690,691 (+)NCBIUU_Cfam_GSD_1.0
Spmip7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118104,781,206 - 104,843,303 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366861,680,341 - 1,742,287 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366861,679,572 - 1,744,008 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPMIP7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1218,646,498 - 8,710,205 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl218,646,586 - 8,709,554 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606213,567,473 - 13,630,525 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spmip7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247403,986,556 - 4,027,580 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247403,986,528 - 4,029,876 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SPMIP7
1635 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system reproductive system respiratory system
High
Medium
Low 4 2 5 12 1
Below cutoff 3 1 9 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000017022   ⟹   ENSSSCP00000016567
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9136,188,608 - 136,235,985 (+)Ensembl
RefSeq Acc Id: XM_021063908   ⟹   XP_020919567
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19136,189,235 - 136,224,000 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021063909   ⟹   XP_020919568
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19136,189,235 - 136,223,006 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020919567   ⟸   XM_021063908
- Peptide Label: isoform X1
- UniProtKB: A0A4X1TDQ2 (UniProtKB/TrEMBL),   F1SF27 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919568   ⟸   XM_021063909
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000016567   ⟸   ENSSSCT00000017022


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015628 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00035076852 UniProtKB/TrEMBL
  ENSSSCG00045009537 UniProtKB/TrEMBL
  ENSSSCG00050059584 UniProtKB/TrEMBL
  ENSSSCG00055009637 UniProtKB/TrEMBL
  ENSSSCG00070008042 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000017022 ENTREZGENE
  ENSSSCT00000017022.5 UniProtKB/TrEMBL
  ENSSSCT00035104667.1 UniProtKB/TrEMBL
  ENSSSCT00045016181.1 UniProtKB/TrEMBL
  ENSSSCT00050081176.1 UniProtKB/TrEMBL
  ENSSSCT00055018856.1 UniProtKB/TrEMBL
  ENSSSCT00070015525.1 UniProtKB/TrEMBL
InterPro SPATA48 UniProtKB/TrEMBL
NCBI Gene SPATA48 ENTREZGENE
PANTHER PTHR34759 UniProtKB/TrEMBL
  SPERMATOGENESIS-ASSOCIATED PROTEIN 48 UniProtKB/TrEMBL
Pfam SPATA48 UniProtKB/TrEMBL
UniProt A0A4X1TDQ2 ENTREZGENE, UniProtKB/TrEMBL
  F1SF27 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:93384 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-01 SPMIP7  sperm microtubule inner protein 7  SPATA48  spermatogenesis associated 48  Symbol and/or name change 19259463 PROVISIONAL