LOC100515529 (putative olfactory receptor 2W6) - Rat Genome Database

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Pathways
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Gene: LOC100515529 (putative olfactory receptor 2W6) Sus scrofa
Analyze
Symbol: LOC100515529
Name: putative olfactory receptor 2W6
RGD ID: 13878555
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Bonobo
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1256,814,471 - 56,815,397 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2257,713,442 - 57,714,368 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC100515529
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1256,814,471 - 56,815,397 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2257,713,442 - 57,714,368 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OR2W5P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381247,488,093 - 247,492,409 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1247,488,093 - 247,492,415 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl1247,491,128 - 247,492,090 (+)EnsemblGRCh38hg38GRCh38
GRCh371247,651,395 - 247,655,711 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361245,721,053 - 245,722,015 (+)NCBINCBI36Build 36hg18NCBI36
Build 341243,980,470 - 243,981,433NCBI
Celera1220,953,148 - 220,954,489 (+)NCBICelera
Cytogenetic Map1q44NCBI
HuRef1218,048,460 - 218,049,801 (+)NCBIHuRef
CHM1_11248,926,706 - 248,928,047 (+)NCBICHM1_1
T2T-CHM13v2.01246,924,900 - 246,929,217 (+)NCBIT2T-CHM13v2.0
LOC100984086
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211,564,286 - 1,568,587 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111,836,767 - 1,841,064 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01223,127,537 - 223,128,421 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11228,578,545 - 228,579,826 (+)NCBIpanpan1.1PanPan1.1panPan2
LOC103230932
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12584,501,241 - 84,504,479 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605586,888,869 - 86,890,157 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in LOC100515529
17 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003123561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003123561   ⟹   XP_003123609
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1256,814,471 - 56,815,397 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003123609   ⟸   XM_003123561
- UniProtKB: F1S6N5 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013942 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005041608 UniProtKB/TrEMBL
  ENSSSCG00015076581 UniProtKB/TrEMBL
  ENSSSCG00025028905 UniProtKB/TrEMBL
  ENSSSCG00030052617 UniProtKB/TrEMBL
  ENSSSCG00035049110 UniProtKB/TrEMBL
  ENSSSCG00040007590 UniProtKB/TrEMBL
  ENSSSCG00045031666 UniProtKB/TrEMBL
  ENSSSCG00050029326 UniProtKB/TrEMBL
  ENSSSCG00055010445 UniProtKB/TrEMBL
  ENSSSCG00060006044 UniProtKB/TrEMBL
  ENSSSCG00065048937 UniProtKB/TrEMBL
  ENSSSCG00070013484 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000015228 ENTREZGENE
  ENSSSCT00000015228.3 UniProtKB/TrEMBL
  ENSSSCT00005066614.1 UniProtKB/TrEMBL
  ENSSSCT00015103320.1 UniProtKB/TrEMBL
  ENSSSCT00025039221.1 UniProtKB/TrEMBL
  ENSSSCT00030073352.1 UniProtKB/TrEMBL
  ENSSSCT00035065435.1 UniProtKB/TrEMBL
  ENSSSCT00040009958.1 UniProtKB/TrEMBL
  ENSSSCT00045053985.1 UniProtKB/TrEMBL
  ENSSSCT00050039426.1 UniProtKB/TrEMBL
  ENSSSCT00055020407.1 UniProtKB/TrEMBL
  ENSSSCT00060007657.1 UniProtKB/TrEMBL
  ENSSSCT00065066970.1 UniProtKB/TrEMBL
  ENSSSCT00070026286.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report ssc:100515529 UniProtKB/TrEMBL
NCBI Gene LOC100515529 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 2W5 PSEUDOGENE-RELATED UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
SMART 7TM_GPCR_Srsx UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A4X1U1N2_PIG UniProtKB/TrEMBL
  A0A8D1A936_PIG UniProtKB/TrEMBL
  F1S6N5 ENTREZGENE, UniProtKB/TrEMBL