LOC100523076 (olfactory receptor 11H12-like) - Rat Genome Database

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Pathways
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Gene: LOC100523076 (olfactory receptor 11H12-like) Sus scrofa
Analyze
Symbol: LOC100523076
Name: olfactory receptor 11H12-like
RGD ID: 13878327
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Dog
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1778,856,525 - 78,857,785 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27133,688,873 - 133,697,745 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC100523076
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1778,856,525 - 78,857,785 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27133,688,873 - 133,697,745 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OR11H12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381418,601,117 - 18,602,097 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1418,601,117 - 18,602,097 (+)EnsemblGRCh38hg38GRCh38
GRCh371419,377,594 - 19,378,574 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361418,447,594 - 18,448,574 (+)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map14q11.2NCBI
CHM1_11419,378,841 - 19,379,821 (+)NCBICHM1_1
T2T-CHM13v2.01413,104,505 - 13,105,485 (+)NCBIT2T-CHM13v2.0
OR11H12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11517,396,605 - 17,397,958 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1517,396,721 - 17,397,701 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1517,878,192 - 17,879,545 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01517,653,101 - 17,654,621 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1517,653,384 - 17,654,364 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11517,343,090 - 17,344,443 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01517,390,043 - 17,391,854 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01517,523,096 - 17,524,449 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in LOC100523076
80 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

nervous system
High
Medium
Low
Below cutoff 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021100008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021100008   ⟹   XP_020955667
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1778,856,525 - 78,857,785 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020955667 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000002817
  ENSSSCP00000002817.5
  ENSSSCP00070014973.1
Reference Protein Sequences
RefSeq Acc Id: XP_020955667   ⟸   XM_021100008
- UniProtKB: A0A4X1TIK9 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000002608 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070009295 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000002895 ENTREZGENE
  ENSSSCT00000002895.5 UniProtKB/TrEMBL
  ENSSSCT00070018034.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene LOC100523076 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 11H1-RELATED UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A4X1TIK9 ENTREZGENE, UniProtKB/TrEMBL
  F1S7F5_PIG UniProtKB/TrEMBL