DENND10 (DENN domain containing 10) - Rat Genome Database

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Gene: DENND10 (DENN domain containing 10) Sus scrofa
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Symbol: DENND10
Name: DENN domain containing 10
RGD ID: 13877500
Description: ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (inferred); small GTPase binding (inferred); INVOLVED IN endosome transport via multivesicular body sorting pathway (inferred); protein transport (inferred); regulation of early endosome to late endosome transport (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN endosome (inferred); late endosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FAM45A; family with sequence similarity 45 member A; protein FAM45A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14129,007,239 - 129,056,763 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114129,007,209 - 129,048,111 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214140,538,041 - 140,572,707 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
endosome  (IEA)
late endosome  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:30032202  


Genomics

Comparative Map Data
DENND10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14129,007,239 - 129,056,763 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114129,007,209 - 129,048,111 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214140,538,041 - 140,572,707 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DENND10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810119,104,113 - 119,137,984 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10119,104,086 - 119,137,984 (+)EnsemblGRCh38hg38GRCh38
GRCh3710120,863,625 - 120,897,496 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610120,853,601 - 120,887,213 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410120,853,600 - 120,887,212NCBI
Celera10114,594,076 - 114,626,795 (+)NCBICelera
Cytogenetic Map10q26.11NCBI
HuRef10114,500,242 - 114,526,453 (+)NCBIHuRef
CHM1_110121,148,027 - 121,181,603 (+)NCBICHM1_1
T2T-CHM13v2.010119,999,563 - 120,033,391 (+)NCBIT2T-CHM13v2.0
Dennd10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391960,800,029 - 60,824,673 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1960,800,023 - 60,824,665 (+)EnsemblGRCm39 Ensembl
GRCm381960,811,555 - 60,836,235 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1960,811,585 - 60,836,227 (+)EnsemblGRCm38mm10GRCm38
MGSCv371960,887,473 - 60,912,135 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361960,866,274 - 60,890,890 (+)NCBIMGSCv36mm8
Celera1963,021,151 - 63,045,424 (+)NCBICelera
Cytogenetic Map19D3NCBI
cM Map1956.52NCBI
Dennd10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81269,937,023 - 269,960,506 (+)NCBIGRCr8
mRatBN7.21259,950,955 - 259,974,459 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1259,950,866 - 259,974,455 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1268,157,895 - 268,181,155 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01274,863,921 - 274,887,181 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01267,518,241 - 267,541,489 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01282,188,080 - 282,211,588 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1282,188,110 - 282,210,580 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01289,526,625 - 289,550,139 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41267,417,683 - 267,441,183 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11267,628,755 - 267,652,267 (+)NCBI
Celera1255,592,048 - 255,615,542 (+)NCBICelera
Cytogenetic Map1q55NCBI
Dennd10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543123,600,589 - 23,624,292 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543123,601,338 - 23,623,852 (+)NCBIChiLan1.0ChiLan1.0
DENND10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28130,965,817 - 130,996,749 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110130,971,182 - 131,002,103 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010115,677,737 - 115,708,548 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110119,112,394 - 119,132,778 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10119,101,448 - 119,131,446 (+)Ensemblpanpan1.1panPan2
DENND10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12829,325,721 - 29,369,218 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2829,326,014 - 29,367,916 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2829,469,452 - 29,511,222 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02829,858,116 - 29,899,872 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2829,858,080 - 29,900,284 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12829,412,004 - 29,454,285 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02829,431,880 - 29,473,803 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02829,626,164 - 29,668,069 (+)NCBIUU_Cfam_GSD_1.0
Dennd10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721316,985,646 - 17,004,348 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364868,557,017 - 8,578,856 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364868,556,954 - 8,575,113 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DENND10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19111,900,679 - 111,929,890 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604873,168,280 - 73,199,750 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dennd10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473727,647,121 - 27,668,858 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473727,634,338 - 27,668,829 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DENND10
1474 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2 3 5 16 2 3 3
Low 8 2 2 7
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000011681   ⟹   ENSSSCP00000011379
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14129,007,239 - 129,048,107 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000060975   ⟹   ENSSSCP00000031742
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14129,023,403 - 129,056,763 (+)Ensembl
RefSeq Acc Id: XM_005671503   ⟹   XP_005671560
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114129,007,217 - 129,047,997 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013983794   ⟹   XP_013839248
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114129,012,548 - 129,047,996 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013983795   ⟹   XP_013839249
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114129,007,209 - 129,047,996 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021073438   ⟹   XP_020929097
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114129,023,368 - 129,048,111 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021073439   ⟹   XP_020929098
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114129,023,376 - 129,048,111 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021073440   ⟹   XP_020929099
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114129,023,376 - 129,047,999 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021073441   ⟹   XP_020929100
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114129,007,264 - 129,047,996 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021073442   ⟹   XP_020929101
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114129,007,239 - 129,047,996 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021073443   ⟹   XP_020929102
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114129,023,388 - 129,047,999 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013839249   ⟸   XM_013983795
- Peptide Label: isoform X3
- UniProtKB: A0A4X1SX83 (UniProtKB/TrEMBL),   A0A4X1SXA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005671560   ⟸   XM_005671503
- Peptide Label: isoform X1
- UniProtKB: F1S4P4 (UniProtKB/TrEMBL),   A0A4X1SXC8 (UniProtKB/TrEMBL),   A0A8D1LFE8 (UniProtKB/TrEMBL),   A0A8D2BIZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020929101   ⟸   XM_021073442
- Peptide Label: isoform X3
- UniProtKB: A0A4X1SX83 (UniProtKB/TrEMBL),   A0A4X1SXA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020929100   ⟸   XM_021073441
- Peptide Label: isoform X3
- UniProtKB: A0A4X1SX83 (UniProtKB/TrEMBL),   A0A4X1SXA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013839248   ⟸   XM_013983794
- Peptide Label: isoform X3
- UniProtKB: A0A4X1SX83 (UniProtKB/TrEMBL),   A0A4X1SXA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020929097   ⟸   XM_021073438
- Peptide Label: isoform X2
- UniProtKB: A0A286ZJN7 (UniProtKB/TrEMBL),   A0A4X1SVK0 (UniProtKB/TrEMBL),   A0A8D2BIZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020929098   ⟸   XM_021073439
- Peptide Label: isoform X3
- UniProtKB: A0A4X1SX83 (UniProtKB/TrEMBL),   A0A4X1SXA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020929099   ⟸   XM_021073440
- Peptide Label: isoform X3
- UniProtKB: A0A4X1SX83 (UniProtKB/TrEMBL),   A0A4X1SXA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020929102   ⟸   XM_021073443
- Peptide Label: isoform X3
- UniProtKB: A0A4X1SX83 (UniProtKB/TrEMBL),   A0A4X1SXA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000011379   ⟸   ENSSSCT00000011681
RefSeq Acc Id: ENSSSCP00000031742   ⟸   ENSSSCT00000060975
Protein Domains
uDENN


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010680 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005004601 UniProtKB/TrEMBL
  ENSSSCG00015007522 UniProtKB/TrEMBL
  ENSSSCG00030015158 UniProtKB/TrEMBL
  ENSSSCG00035078598 UniProtKB/TrEMBL
  ENSSSCG00040045783 UniProtKB/TrEMBL
  ENSSSCG00045033150 UniProtKB/TrEMBL
  ENSSSCG00050013449 UniProtKB/TrEMBL
  ENSSSCG00055004575 UniProtKB/TrEMBL
  ENSSSCG00060039525 UniProtKB/TrEMBL
  ENSSSCG00065049459 UniProtKB/TrEMBL
  ENSSSCG00070004448 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011681 ENTREZGENE
  ENSSSCT00000011681.5 UniProtKB/TrEMBL
  ENSSSCT00000060975 ENTREZGENE
  ENSSSCT00000060975.2 UniProtKB/TrEMBL
  ENSSSCT00005006791.1 UniProtKB/TrEMBL
  ENSSSCT00005006830.1 UniProtKB/TrEMBL
  ENSSSCT00015009921.1 UniProtKB/TrEMBL
  ENSSSCT00030020902.1 UniProtKB/TrEMBL
  ENSSSCT00030020909.1 UniProtKB/TrEMBL
  ENSSSCT00035107252.1 UniProtKB/TrEMBL
  ENSSSCT00035107286.1 UniProtKB/TrEMBL
  ENSSSCT00040061509.1 UniProtKB/TrEMBL
  ENSSSCT00040061578.1 UniProtKB/TrEMBL
  ENSSSCT00045056623.1 UniProtKB/TrEMBL
  ENSSSCT00045056695.1 UniProtKB/TrEMBL
  ENSSSCT00050018145.1 UniProtKB/TrEMBL
  ENSSSCT00050018154.1 UniProtKB/TrEMBL
  ENSSSCT00055009011.1 UniProtKB/TrEMBL
  ENSSSCT00055009013.1 UniProtKB/TrEMBL
  ENSSSCT00055009019.1 UniProtKB/TrEMBL
  ENSSSCT00060053488.1 UniProtKB/TrEMBL
  ENSSSCT00060053491.1 UniProtKB/TrEMBL
  ENSSSCT00065067719.1 UniProtKB/TrEMBL
  ENSSSCT00065067728.1 UniProtKB/TrEMBL
  ENSSSCT00070008399.1 UniProtKB/TrEMBL
  ENSSSCT00070008414.1 UniProtKB/TrEMBL
  ENSSSCT00070008422.1 UniProtKB/TrEMBL
  ENSSSCT00070008429.1 UniProtKB/TrEMBL
  ENSSSCT00070008447.1 UniProtKB/TrEMBL
InterPro FAM45 UniProtKB/TrEMBL
  Tripartite_DENN UniProtKB/TrEMBL
KEGG Report ssc:100155371 UniProtKB/TrEMBL
NCBI Gene FAM45A ENTREZGENE
PANTHER DENN DOMAIN-CONTAINING PROTEIN 10-RELATED UniProtKB/TrEMBL
  PTHR28544 UniProtKB/TrEMBL
Pfam SPA UniProtKB/TrEMBL
PROSITE DENN UniProtKB/TrEMBL
UniProt A0A286ZJN7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SVK0 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SX83 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SXA6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SXC8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1LFE8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2BIZ8 ENTREZGENE, UniProtKB/TrEMBL
  F1S4P4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:107384 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-06-18 DENND10  DENN domain containing 10  FAM45A  family with sequence similarity 45 member A  Symbol and/or name change 5135510 APPROVED