ZFP37 (ZFP37 zinc finger protein) - Rat Genome Database

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Gene: ZFP37 (ZFP37 zinc finger protein) Sus scrofa
Analyze
Symbol: ZFP37
Name: ZFP37 zinc finger protein
RGD ID: 13876371
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger protein 37 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11253,702,590 - 253,742,614 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21284,519,927 - 284,538,641 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZFP37
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11253,702,590 - 253,742,614 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21284,519,927 - 284,538,641 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZFP37
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389113,038,377 - 113,056,724 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9113,038,377 - 113,056,759 (-)EnsemblGRCh38hg38GRCh38
GRCh379115,800,657 - 115,819,004 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369114,843,995 - 114,858,817 (-)NCBINCBI36Build 36hg18NCBI36
Build 349112,883,728 - 112,898,551NCBI
Celera986,148,311 - 86,163,133 (+)NCBICelera
Cytogenetic Map9q32NCBI
HuRef985,402,280 - 85,417,102 (-)NCBIHuRef
CHM1_19115,951,535 - 115,966,362 (-)NCBICHM1_1
T2T-CHM13v2.09125,191,240 - 125,228,482 (-)NCBIT2T-CHM13v2.0
Zfp37
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39462,107,777 - 62,126,685 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl462,107,777 - 62,149,284 (-)EnsemblGRCm39 Ensembl
GRCm38462,189,537 - 62,209,129 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl462,189,540 - 62,231,047 (-)EnsemblGRCm38mm10GRCm38
MGSCv37461,850,577 - 61,869,580 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36461,675,904 - 61,694,788 (-)NCBIMGSCv36mm8
Celera460,862,602 - 60,881,623 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map433.04NCBI
Zfp37-ps1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8579,725,250 - 79,754,982 (+)NCBIGRCr8
mRatBN7.2574,930,335 - 74,960,075 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl574,863,483 - 74,960,101 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx576,830,218 - 76,859,935 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0578,651,851 - 78,681,574 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0578,624,028 - 78,653,751 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0577,265,335 - 77,294,739 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl577,266,842 - 77,294,765 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0581,395,985 - 81,424,381 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4578,187,167 - 78,215,316 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera573,733,457 - 73,760,707 (-)NCBICelera
Cytogenetic Map5q24NCBI
Zfp37
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541914,415,733 - 14,424,694 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541914,408,652 - 14,426,670 (+)NCBIChiLan1.0ChiLan1.0
ZFP37
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21126,380,463 - 26,395,612 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1926,382,822 - 26,397,971 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0984,162,037 - 84,181,780 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19112,319,791 - 112,334,702 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9112,319,791 - 112,334,702 (-)Ensemblpanpan1.1panPan2
ZFP37
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11167,424,840 - 67,456,771 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1167,442,836 - 67,460,280 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1165,847,821 - 65,861,366 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01168,567,301 - 68,583,812 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1168,567,359 - 68,583,792 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11167,084,629 - 67,102,746 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01167,106,682 - 67,121,382 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01167,851,417 - 67,867,021 (-)NCBIUU_Cfam_GSD_1.0
Zfp37
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947182,744,713 - 182,759,362 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936559513,160 - 520,695 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936559507,210 - 522,175 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFP37
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11226,485,047 - 26,500,412 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1226,485,828 - 26,499,362 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603516,289,399 - 16,308,555 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfp37
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476022,038,706 - 22,043,296 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476022,033,252 - 22,044,416 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZFP37
1569 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system
High
Medium
Low 3 1 3 2 23 3
Below cutoff 5 1 1 1 2

Sequence


RefSeq Acc Id: XM_005660335   ⟹   XP_005660392
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11253,702,590 - 253,742,614 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005660392 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000051727.1
  ENSSSCP00025038022.1
  ENSSSCP00035014806.1
  ENSSSCP00045037703.1
  ENSSSCP00070015291.1
RefSeq Acc Id: XP_005660392   ⟸   XM_005660335
- Sequence:
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000005475 UniProtKB/TrEMBL
  ENSSSCG00025063704 UniProtKB/TrEMBL
  ENSSSCG00035028045 UniProtKB/TrEMBL
  ENSSSCG00045031680 UniProtKB/TrEMBL
  ENSSSCG00070009499 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000065297.2 UniProtKB/TrEMBL
  ENSSSCT00025087256.1 UniProtKB/TrEMBL
  ENSSSCT00035037112.1 UniProtKB/TrEMBL
  ENSSSCT00045054168.1 UniProtKB/TrEMBL
  ENSSSCT00070018407.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report ssc:100517074 UniProtKB/TrEMBL
NCBI Gene ZFP37 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN OZF UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A287B5Z3_PIG UniProtKB/TrEMBL
  A0A4X1TJA6_PIG UniProtKB/TrEMBL